data_5VNO # _model_server_result.job_id WEok-4w1pFjPSf5mtqxA2A _model_server_result.datetime_utc '2024-11-21 18:31:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1101}' # _entry.id 5VNO # _exptl.entry_id 5VNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.45 _cell.angle_gamma 90 _cell.entry_id 5VNO _cell.length_a 158.046 _cell.length_b 96.727 _cell.length_c 126.796 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 61 A CYS 61 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 A SG CYS 66 A CYS 66 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc3 A SG CYS 85 A CYS 85 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 D ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc5 B SG CYS 86 B CYS 431 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc6 B SG CYS 89 B CYS 434 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 B SG CYS 107 B CYS 452 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 B SG CYS 110 B CYS 455 1_555 E ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNO _atom_sites.fract_transf_matrix[1][1] 0.006327 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00016 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010338 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007889 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 801 1 ZN ZN . E 4 ZN B 1 1101 1 ZN ZN . F 5 HOH A 1 901 35 HOH HOH . F 5 HOH A 2 902 4 HOH HOH . F 5 HOH A 3 903 20 HOH HOH . F 5 HOH A 4 904 33 HOH HOH . F 5 HOH A 5 905 8 HOH HOH . F 5 HOH A 6 906 2 HOH HOH . F 5 HOH A 7 907 30 HOH HOH . F 5 HOH A 8 908 32 HOH HOH . F 5 HOH A 9 909 7 HOH HOH . F 5 HOH A 10 910 29 HOH HOH . F 5 HOH A 11 911 34 HOH HOH . F 5 HOH A 12 912 31 HOH HOH . G 5 HOH B 1 1201 13 HOH HOH . G 5 HOH B 2 1202 49 HOH HOH . G 5 HOH B 3 1203 38 HOH HOH . G 5 HOH B 4 1204 50 HOH HOH . G 5 HOH B 5 1205 62 HOH HOH . G 5 HOH B 6 1206 56 HOH HOH . G 5 HOH B 7 1207 47 HOH HOH . G 5 HOH B 8 1208 6 HOH HOH . G 5 HOH B 9 1209 48 HOH HOH . G 5 HOH B 10 1210 55 HOH HOH . G 5 HOH B 11 1211 46 HOH HOH . G 5 HOH B 12 1212 41 HOH HOH . G 5 HOH B 13 1213 15 HOH HOH . G 5 HOH B 14 1214 43 HOH HOH . G 5 HOH B 15 1215 18 HOH HOH . G 5 HOH B 16 1216 52 HOH HOH . G 5 HOH B 17 1217 12 HOH HOH . G 5 HOH B 18 1218 60 HOH HOH . G 5 HOH B 19 1219 5 HOH HOH . G 5 HOH B 20 1220 28 HOH HOH . G 5 HOH B 21 1221 14 HOH HOH . G 5 HOH B 22 1222 45 HOH HOH . G 5 HOH B 23 1223 3 HOH HOH . G 5 HOH B 24 1224 21 HOH HOH . G 5 HOH B 25 1225 42 HOH HOH . G 5 HOH B 26 1226 26 HOH HOH . G 5 HOH B 27 1227 57 HOH HOH . G 5 HOH B 28 1228 9 HOH HOH . G 5 HOH B 29 1229 44 HOH HOH . G 5 HOH B 30 1230 36 HOH HOH . G 5 HOH B 31 1231 24 HOH HOH . G 5 HOH B 32 1232 22 HOH HOH . G 5 HOH B 33 1233 25 HOH HOH . G 5 HOH B 34 1234 59 HOH HOH . G 5 HOH B 35 1235 61 HOH HOH . G 5 HOH B 36 1236 40 HOH HOH . G 5 HOH B 37 1237 37 HOH HOH . G 5 HOH B 38 1238 16 HOH HOH . G 5 HOH B 39 1239 10 HOH HOH . G 5 HOH B 40 1240 27 HOH HOH . G 5 HOH B 41 1241 51 HOH HOH . G 5 HOH B 42 1242 39 HOH HOH . G 5 HOH B 43 1243 23 HOH HOH . G 5 HOH B 44 1244 17 HOH HOH . G 5 HOH B 45 1245 19 HOH HOH . G 5 HOH B 46 1246 58 HOH HOH . G 5 HOH B 47 1247 11 HOH HOH . H 5 HOH C 1 201 54 HOH HOH . H 5 HOH C 2 202 53 HOH HOH . H 5 HOH C 3 203 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 43.136 _atom_site.Cartn_y 60.443 _atom_site.Cartn_z 52.344 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 110.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1101 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #