data_5VNR # _model_server_result.job_id KWbhI27iVXLNKQQbqNCckw _model_server_result.datetime_utc '2024-11-28 08:00:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5VNR # _exptl.entry_id 5VNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 35.453 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VNR _cell.length_a 59.83 _cell.length_b 59.83 _cell.length_c 95.461 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 11 A GLU 11 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc2 A OE1 GLU 11 A GLU 11 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc3 A OH TYR 18 A TYR 18 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.979 ? metalc ? metalc4 C NA NA . A NA 202 1_555 H O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc5 C NA NA . A NA 202 1_555 H O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc6 C NA NA . A NA 202 1_555 H O HOH . A HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc7 C NA NA . A NA 202 1_555 H O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.147 ? metalc ? metalc8 C NA NA . A NA 202 1_555 H O HOH . A HOH 554 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? # _chem_comp.formula 'Cl -1' _chem_comp.formula_weight 35.453 _chem_comp.id CL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VNR _atom_sites.fract_transf_matrix[1][1] 0.016714 _atom_sites.fract_transf_matrix[1][2] 0.00965 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 201 1 PO4 PO4 . C 3 NA A 1 202 1 NA NA . D 4 HED A 1 203 1 HED HED . E 5 CL A 1 204 1 CL CL . F 5 CL A 1 205 2 CL CL . G 6 GOL A 1 206 2 GOL GOL . H 7 HOH A 1 301 107 HOH HOH . H 7 HOH A 2 302 168 HOH HOH . H 7 HOH A 3 303 77 HOH HOH . H 7 HOH A 4 304 72 HOH HOH . H 7 HOH A 5 305 281 HOH HOH . H 7 HOH A 6 306 80 HOH HOH . H 7 HOH A 7 307 81 HOH HOH . H 7 HOH A 8 308 285 HOH HOH . H 7 HOH A 9 309 145 HOH HOH . H 7 HOH A 10 310 2 HOH HOH . H 7 HOH A 11 311 121 HOH HOH . H 7 HOH A 12 312 216 HOH HOH . H 7 HOH A 13 313 272 HOH HOH . H 7 HOH A 14 314 28 HOH HOH . H 7 HOH A 15 315 169 HOH HOH . H 7 HOH A 16 316 179 HOH HOH . H 7 HOH A 17 317 164 HOH HOH . H 7 HOH A 18 318 100 HOH HOH . H 7 HOH A 19 319 110 HOH HOH . H 7 HOH A 20 320 222 HOH HOH . H 7 HOH A 21 321 61 HOH HOH . H 7 HOH A 22 322 162 HOH HOH . H 7 HOH A 23 323 309 HOH HOH . H 7 HOH A 24 324 190 HOH HOH . H 7 HOH A 25 325 112 HOH HOH . H 7 HOH A 26 326 260 HOH HOH . H 7 HOH A 27 327 144 HOH HOH . H 7 HOH A 28 328 180 HOH HOH . H 7 HOH A 29 329 16 HOH HOH . H 7 HOH A 30 330 105 HOH HOH . H 7 HOH A 31 331 90 HOH HOH . H 7 HOH A 32 332 67 HOH HOH . H 7 HOH A 33 333 78 HOH HOH . H 7 HOH A 34 334 104 HOH HOH . H 7 HOH A 35 335 300 HOH HOH . H 7 HOH A 36 336 24 HOH HOH . H 7 HOH A 37 337 35 HOH HOH . H 7 HOH A 38 338 76 HOH HOH . H 7 HOH A 39 339 52 HOH HOH . H 7 HOH A 40 340 101 HOH HOH . H 7 HOH A 41 341 22 HOH HOH . H 7 HOH A 42 342 11 HOH HOH . H 7 HOH A 43 343 246 HOH HOH . H 7 HOH A 44 344 9 HOH HOH . H 7 HOH A 45 345 10 HOH HOH . H 7 HOH A 46 346 188 HOH HOH . H 7 HOH A 47 347 97 HOH HOH . H 7 HOH A 48 348 102 HOH HOH . H 7 HOH A 49 349 170 HOH HOH . H 7 HOH A 50 350 39 HOH HOH . H 7 HOH A 51 351 53 HOH HOH . H 7 HOH A 52 352 227 HOH HOH . H 7 HOH A 53 353 115 HOH HOH . H 7 HOH A 54 354 135 HOH HOH . H 7 HOH A 55 355 283 HOH HOH . H 7 HOH A 56 356 36 HOH HOH . H 7 HOH A 57 357 34 HOH HOH . H 7 HOH A 58 358 56 HOH HOH . H 7 HOH A 59 359 89 HOH HOH . H 7 HOH A 60 360 122 HOH HOH . H 7 HOH A 61 361 20 HOH HOH . H 7 HOH A 62 362 1 HOH HOH . H 7 HOH A 63 363 45 HOH HOH . H 7 HOH A 64 364 50 HOH HOH . H 7 HOH A 65 365 59 HOH HOH . H 7 HOH A 66 366 49 HOH HOH . H 7 HOH A 67 367 93 HOH HOH . H 7 HOH A 68 368 98 HOH HOH . H 7 HOH A 69 369 55 HOH HOH . H 7 HOH A 70 370 8 HOH HOH . H 7 HOH A 71 371 95 HOH HOH . H 7 HOH A 72 372 206 HOH HOH . H 7 HOH A 73 373 139 HOH HOH . H 7 HOH A 74 374 111 HOH HOH . H 7 HOH A 75 375 27 HOH HOH . H 7 HOH A 76 376 46 HOH HOH . H 7 HOH A 77 377 83 HOH HOH . H 7 HOH A 78 378 178 HOH HOH . H 7 HOH A 79 379 13 HOH HOH . H 7 HOH A 80 380 197 HOH HOH . H 7 HOH A 81 381 233 HOH HOH . H 7 HOH A 82 382 32 HOH HOH . H 7 HOH A 83 383 276 HOH HOH . H 7 HOH A 84 384 278 HOH HOH . H 7 HOH A 85 385 106 HOH HOH . H 7 HOH A 86 386 181 HOH HOH . H 7 HOH A 87 387 195 HOH HOH . H 7 HOH A 88 388 201 HOH HOH . H 7 HOH A 89 389 58 HOH HOH . H 7 HOH A 90 390 65 HOH HOH . H 7 HOH A 91 391 4 HOH HOH . H 7 HOH A 92 392 60 HOH HOH . H 7 HOH A 93 393 41 HOH HOH . H 7 HOH A 94 394 3 HOH HOH . H 7 HOH A 95 395 210 HOH HOH . H 7 HOH A 96 396 30 HOH HOH . H 7 HOH A 97 397 70 HOH HOH . H 7 HOH A 98 398 31 HOH HOH . H 7 HOH A 99 399 244 HOH HOH . H 7 HOH A 100 400 163 HOH HOH . H 7 HOH A 101 401 237 HOH HOH . H 7 HOH A 102 402 25 HOH HOH . H 7 HOH A 103 403 284 HOH HOH . H 7 HOH A 104 404 124 HOH HOH . H 7 HOH A 105 405 74 HOH HOH . H 7 HOH A 106 406 152 HOH HOH . H 7 HOH A 107 407 51 HOH HOH . H 7 HOH A 108 408 187 HOH HOH . H 7 HOH A 109 409 14 HOH HOH . H 7 HOH A 110 410 7 HOH HOH . H 7 HOH A 111 411 21 HOH HOH . H 7 HOH A 112 412 29 HOH HOH . H 7 HOH A 113 413 136 HOH HOH . H 7 HOH A 114 414 5 HOH HOH . H 7 HOH A 115 415 23 HOH HOH . H 7 HOH A 116 416 165 HOH HOH . H 7 HOH A 117 417 85 HOH HOH . H 7 HOH A 118 418 269 HOH HOH . H 7 HOH A 119 419 64 HOH HOH . H 7 HOH A 120 420 129 HOH HOH . H 7 HOH A 121 421 96 HOH HOH . H 7 HOH A 122 422 43 HOH HOH . H 7 HOH A 123 423 176 HOH HOH . H 7 HOH A 124 424 185 HOH HOH . H 7 HOH A 125 425 6 HOH HOH . H 7 HOH A 126 426 133 HOH HOH . H 7 HOH A 127 427 305 HOH HOH . H 7 HOH A 128 428 92 HOH HOH . H 7 HOH A 129 429 223 HOH HOH . H 7 HOH A 130 430 141 HOH HOH . H 7 HOH A 131 431 148 HOH HOH . H 7 HOH A 132 432 123 HOH HOH . H 7 HOH A 133 433 75 HOH HOH . H 7 HOH A 134 434 209 HOH HOH . H 7 HOH A 135 435 15 HOH HOH . H 7 HOH A 136 436 203 HOH HOH . H 7 HOH A 137 437 236 HOH HOH . H 7 HOH A 138 438 208 HOH HOH . H 7 HOH A 139 439 282 HOH HOH . H 7 HOH A 140 440 40 HOH HOH . H 7 HOH A 141 441 191 HOH HOH . H 7 HOH A 142 442 171 HOH HOH . H 7 HOH A 143 443 108 HOH HOH . H 7 HOH A 144 444 120 HOH HOH . H 7 HOH A 145 445 154 HOH HOH . H 7 HOH A 146 446 177 HOH HOH . H 7 HOH A 147 447 242 HOH HOH . H 7 HOH A 148 448 26 HOH HOH . H 7 HOH A 149 449 125 HOH HOH . H 7 HOH A 150 450 150 HOH HOH . H 7 HOH A 151 451 66 HOH HOH . H 7 HOH A 152 452 158 HOH HOH . H 7 HOH A 153 453 19 HOH HOH . H 7 HOH A 154 454 257 HOH HOH . H 7 HOH A 155 455 37 HOH HOH . H 7 HOH A 156 456 194 HOH HOH . H 7 HOH A 157 457 69 HOH HOH . H 7 HOH A 158 458 174 HOH HOH . H 7 HOH A 159 459 47 HOH HOH . H 7 HOH A 160 460 113 HOH HOH . H 7 HOH A 161 461 57 HOH HOH . H 7 HOH A 162 462 175 HOH HOH . H 7 HOH A 163 463 207 HOH HOH . H 7 HOH A 164 464 280 HOH HOH . H 7 HOH A 165 465 161 HOH HOH . H 7 HOH A 166 466 271 HOH HOH . H 7 HOH A 167 467 167 HOH HOH . H 7 HOH A 168 468 44 HOH HOH . H 7 HOH A 169 469 132 HOH HOH . H 7 HOH A 170 470 18 HOH HOH . H 7 HOH A 171 471 12 HOH HOH . H 7 HOH A 172 472 71 HOH HOH . H 7 HOH A 173 473 193 HOH HOH . H 7 HOH A 174 474 202 HOH HOH . H 7 HOH A 175 475 232 HOH HOH . H 7 HOH A 176 476 138 HOH HOH . H 7 HOH A 177 477 238 HOH HOH . H 7 HOH A 178 478 243 HOH HOH . H 7 HOH A 179 479 126 HOH HOH . H 7 HOH A 180 480 256 HOH HOH . H 7 HOH A 181 481 38 HOH HOH . H 7 HOH A 182 482 94 HOH HOH . H 7 HOH A 183 483 134 HOH HOH . H 7 HOH A 184 484 268 HOH HOH . H 7 HOH A 185 485 298 HOH HOH . H 7 HOH A 186 486 258 HOH HOH . H 7 HOH A 187 487 248 HOH HOH . H 7 HOH A 188 488 131 HOH HOH . H 7 HOH A 189 489 189 HOH HOH . H 7 HOH A 190 490 140 HOH HOH . H 7 HOH A 191 491 211 HOH HOH . H 7 HOH A 192 492 292 HOH HOH . H 7 HOH A 193 493 127 HOH HOH . H 7 HOH A 194 494 219 HOH HOH . H 7 HOH A 195 495 213 HOH HOH . H 7 HOH A 196 496 230 HOH HOH . H 7 HOH A 197 497 296 HOH HOH . H 7 HOH A 198 498 205 HOH HOH . H 7 HOH A 199 499 290 HOH HOH . H 7 HOH A 200 500 302 HOH HOH . H 7 HOH A 201 501 68 HOH HOH . H 7 HOH A 202 502 166 HOH HOH . H 7 HOH A 203 503 220 HOH HOH . H 7 HOH A 204 504 226 HOH HOH . H 7 HOH A 205 505 234 HOH HOH . H 7 HOH A 206 506 249 HOH HOH . H 7 HOH A 207 507 48 HOH HOH . H 7 HOH A 208 508 279 HOH HOH . H 7 HOH A 209 509 291 HOH HOH . H 7 HOH A 210 510 287 HOH HOH . H 7 HOH A 211 511 172 HOH HOH . H 7 HOH A 212 512 255 HOH HOH . H 7 HOH A 213 513 103 HOH HOH . H 7 HOH A 214 514 42 HOH HOH . H 7 HOH A 215 515 259 HOH HOH . H 7 HOH A 216 516 88 HOH HOH . H 7 HOH A 217 517 299 HOH HOH . H 7 HOH A 218 518 160 HOH HOH . H 7 HOH A 219 519 183 HOH HOH . H 7 HOH A 220 520 109 HOH HOH . H 7 HOH A 221 521 117 HOH HOH . H 7 HOH A 222 522 266 HOH HOH . H 7 HOH A 223 523 214 HOH HOH . H 7 HOH A 224 524 294 HOH HOH . H 7 HOH A 225 525 245 HOH HOH . H 7 HOH A 226 526 262 HOH HOH . H 7 HOH A 227 527 303 HOH HOH . H 7 HOH A 228 528 263 HOH HOH . H 7 HOH A 229 529 146 HOH HOH . H 7 HOH A 230 530 225 HOH HOH . H 7 HOH A 231 531 99 HOH HOH . H 7 HOH A 232 532 286 HOH HOH . H 7 HOH A 233 533 79 HOH HOH . H 7 HOH A 234 534 304 HOH HOH . H 7 HOH A 235 535 130 HOH HOH . H 7 HOH A 236 536 86 HOH HOH . H 7 HOH A 237 537 253 HOH HOH . H 7 HOH A 238 538 231 HOH HOH . H 7 HOH A 239 539 228 HOH HOH . H 7 HOH A 240 540 196 HOH HOH . H 7 HOH A 241 541 82 HOH HOH . H 7 HOH A 242 542 301 HOH HOH . H 7 HOH A 243 543 173 HOH HOH . H 7 HOH A 244 544 84 HOH HOH . H 7 HOH A 245 545 198 HOH HOH . H 7 HOH A 246 546 265 HOH HOH . H 7 HOH A 247 547 153 HOH HOH . H 7 HOH A 248 548 157 HOH HOH . H 7 HOH A 249 549 116 HOH HOH . H 7 HOH A 250 550 184 HOH HOH . H 7 HOH A 251 551 239 HOH HOH . H 7 HOH A 252 552 218 HOH HOH . H 7 HOH A 253 553 128 HOH HOH . H 7 HOH A 254 554 91 HOH HOH . H 7 HOH A 255 555 142 HOH HOH . H 7 HOH A 256 556 270 HOH HOH . H 7 HOH A 257 557 295 HOH HOH . H 7 HOH A 258 558 261 HOH HOH . H 7 HOH A 259 559 221 HOH HOH . H 7 HOH A 260 560 118 HOH HOH . H 7 HOH A 261 561 62 HOH HOH . H 7 HOH A 262 562 63 HOH HOH . H 7 HOH A 263 563 229 HOH HOH . H 7 HOH A 264 564 254 HOH HOH . H 7 HOH A 265 565 297 HOH HOH . H 7 HOH A 266 566 241 HOH HOH . H 7 HOH A 267 567 252 HOH HOH . H 7 HOH A 268 568 204 HOH HOH . H 7 HOH A 269 569 73 HOH HOH . H 7 HOH A 270 570 143 HOH HOH . H 7 HOH A 271 571 250 HOH HOH . H 7 HOH A 272 572 264 HOH HOH . H 7 HOH A 273 573 267 HOH HOH . H 7 HOH A 274 574 235 HOH HOH . H 7 HOH A 275 575 240 HOH HOH . H 7 HOH A 276 576 293 HOH HOH . H 7 HOH A 277 577 273 HOH HOH . H 7 HOH A 278 578 155 HOH HOH . H 7 HOH A 279 579 137 HOH HOH . H 7 HOH A 280 580 224 HOH HOH . H 7 HOH A 281 581 251 HOH HOH . H 7 HOH A 282 582 33 HOH HOH . H 7 HOH A 283 583 119 HOH HOH . H 7 HOH A 284 584 200 HOH HOH . H 7 HOH A 285 585 114 HOH HOH . H 7 HOH A 286 586 159 HOH HOH . H 7 HOH A 287 587 186 HOH HOH . H 7 HOH A 288 588 306 HOH HOH . H 7 HOH A 289 589 151 HOH HOH . H 7 HOH A 290 590 199 HOH HOH . H 7 HOH A 291 591 217 HOH HOH . H 7 HOH A 292 592 156 HOH HOH . H 7 HOH A 293 593 149 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CL _atom_site.label_atom_id CL _atom_site.label_comp_id CL _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 36.831 _atom_site.Cartn_y -6.756 _atom_site.Cartn_z -14.001 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CL _atom_site.auth_comp_id CL _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #