data_5VNW # _model_server_result.job_id 9Q0r0tJZ56LuD-CcmRJdIA _model_server_result.datetime_utc '2024-11-08 22:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":601}' # _entry.id 5VNW # _exptl.entry_id 5VNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.14 _cell.angle_beta 104.6 _cell.angle_gamma 104.02 _cell.entry_id 5VNW _cell.length_a 66.338 _cell.length_b 72.15 _cell.length_c 108.513 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,M,P 1 1 B,C,J,K,L,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf35 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf36 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 323 n n C1 O2 PLM doub 324 n n C1 C2 PLM sing 325 n n O1 H PLM sing 326 n n C2 C3 PLM sing 327 n n C2 H21 PLM sing 328 n n C2 H22 PLM sing 329 n n C3 C4 PLM sing 330 n n C3 H31 PLM sing 331 n n C3 H32 PLM sing 332 n n C4 C5 PLM sing 333 n n C4 H41 PLM sing 334 n n C4 H42 PLM sing 335 n n C5 C6 PLM sing 336 n n C5 H51 PLM sing 337 n n C5 H52 PLM sing 338 n n C6 C7 PLM sing 339 n n C6 H61 PLM sing 340 n n C6 H62 PLM sing 341 n n C7 C8 PLM sing 342 n n C7 H71 PLM sing 343 n n C7 H72 PLM sing 344 n n C8 C9 PLM sing 345 n n C8 H81 PLM sing 346 n n C8 H82 PLM sing 347 n n C9 CA PLM sing 348 n n C9 H91 PLM sing 349 n n C9 H92 PLM sing 350 n n CA CB PLM sing 351 n n CA HA1 PLM sing 352 n n CA HA2 PLM sing 353 n n CB CC PLM sing 354 n n CB HB1 PLM sing 355 n n CB HB2 PLM sing 356 n n CC CD PLM sing 357 n n CC HC1 PLM sing 358 n n CC HC2 PLM sing 359 n n CD CE PLM sing 360 n n CD HD1 PLM sing 361 n n CD HD2 PLM sing 362 n n CE CF PLM sing 363 n n CE HE1 PLM sing 364 n n CE HE2 PLM sing 365 n n CF CG PLM sing 366 n n CF HF1 PLM sing 367 n n CF HF2 PLM sing 368 n n CG HG1 PLM sing 369 n n CG HG2 PLM sing 370 n n CG HG3 PLM sing 371 n n # _atom_sites.entry_id 5VNW _atom_sites.fract_transf_matrix[1][1] 0.015074 _atom_sites.fract_transf_matrix[1][2] 0.003765 _atom_sites.fract_transf_matrix[1][3] 0.004676 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014286 _atom_sites.fract_transf_matrix[2][3] 0.002598 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 601 70 GOL GOL . F 3 GOL A 1 602 71 GOL GOL . G 3 GOL A 1 603 72 GOL GOL . H 4 PLM A 1 604 73 PLM PLM . I 5 DAO A 1 605 75 DAO DAO . J 4 PLM B 1 601 74 PLM PLM . K 6 BUA B 1 602 77 BUA BUA . L 3 GOL C 1 201 76 GOL GOL . M 7 HOH A 1 701 10 HOH HOH . M 7 HOH A 2 702 58 HOH HOH . M 7 HOH A 3 703 59 HOH HOH . M 7 HOH A 4 704 11 HOH HOH . M 7 HOH A 5 705 60 HOH HOH . M 7 HOH A 6 706 7 HOH HOH . M 7 HOH A 7 707 15 HOH HOH . M 7 HOH A 8 708 52 HOH HOH . M 7 HOH A 9 709 42 HOH HOH . M 7 HOH A 10 710 61 HOH HOH . M 7 HOH A 11 711 14 HOH HOH . M 7 HOH A 12 712 3 HOH HOH . M 7 HOH A 13 713 30 HOH HOH . M 7 HOH A 14 714 1 HOH HOH . M 7 HOH A 15 715 53 HOH HOH . M 7 HOH A 16 716 54 HOH HOH . M 7 HOH A 17 717 34 HOH HOH . M 7 HOH A 18 718 62 HOH HOH . M 7 HOH A 19 719 41 HOH HOH . M 7 HOH A 20 720 55 HOH HOH . M 7 HOH A 21 721 33 HOH HOH . M 7 HOH A 22 722 69 HOH HOH . M 7 HOH A 23 723 67 HOH HOH . M 7 HOH A 24 724 9 HOH HOH . M 7 HOH A 25 725 50 HOH HOH . M 7 HOH A 26 726 22 HOH HOH . M 7 HOH A 27 727 32 HOH HOH . M 7 HOH A 28 728 16 HOH HOH . M 7 HOH A 29 729 45 HOH HOH . M 7 HOH A 30 730 51 HOH HOH . M 7 HOH A 31 731 66 HOH HOH . M 7 HOH A 32 732 35 HOH HOH . N 7 HOH B 1 701 5 HOH HOH . N 7 HOH B 2 702 2 HOH HOH . N 7 HOH B 3 703 6 HOH HOH . N 7 HOH B 4 704 27 HOH HOH . N 7 HOH B 5 705 47 HOH HOH . N 7 HOH B 6 706 25 HOH HOH . N 7 HOH B 7 707 31 HOH HOH . N 7 HOH B 8 708 17 HOH HOH . N 7 HOH B 9 709 26 HOH HOH . N 7 HOH B 10 710 38 HOH HOH . N 7 HOH B 11 711 46 HOH HOH . N 7 HOH B 12 712 68 HOH HOH . N 7 HOH B 13 713 36 HOH HOH . N 7 HOH B 14 714 49 HOH HOH . N 7 HOH B 15 715 56 HOH HOH . N 7 HOH B 16 716 37 HOH HOH . N 7 HOH B 17 717 12 HOH HOH . N 7 HOH B 18 718 29 HOH HOH . N 7 HOH B 19 719 28 HOH HOH . O 7 HOH C 1 301 23 HOH HOH . O 7 HOH C 2 302 63 HOH HOH . O 7 HOH C 3 303 8 HOH HOH . O 7 HOH C 4 304 64 HOH HOH . O 7 HOH C 5 305 20 HOH HOH . O 7 HOH C 6 306 44 HOH HOH . O 7 HOH C 7 307 4 HOH HOH . O 7 HOH C 8 308 19 HOH HOH . O 7 HOH C 9 309 13 HOH HOH . O 7 HOH C 10 310 18 HOH HOH . O 7 HOH C 11 311 24 HOH HOH . O 7 HOH C 12 312 48 HOH HOH . O 7 HOH C 13 313 21 HOH HOH . P 7 HOH D 1 201 65 HOH HOH . P 7 HOH D 2 202 43 HOH HOH . P 7 HOH D 3 203 39 HOH HOH . P 7 HOH D 4 204 57 HOH HOH . P 7 HOH D 5 205 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . J 4 -44.058 -5.462 -3.39 1 112.04 ? C1 PLM 601 B 1 HETATM 2 O O1 PLM . . . J 4 -44.274 -4.821 -2.339 1 116.16 ? O1 PLM 601 B 1 HETATM 3 O O2 PLM . . . J 4 -44.576 -5.143 -4.482 1 120.21 ? O2 PLM 601 B 1 HETATM 4 C C2 PLM . . . J 4 -43.473 -6.849 -3.268 1 97.88 ? C2 PLM 601 B 1 HETATM 5 C C3 PLM . . . J 4 -43.996 -7.705 -4.414 1 110.09 ? C3 PLM 601 B 1 HETATM 6 C C4 PLM . . . J 4 -42.995 -8.781 -4.819 1 101.79 ? C4 PLM 601 B 1 HETATM 7 C C5 PLM . . . J 4 -43.494 -9.553 -6.035 1 97.91 ? C5 PLM 601 B 1 HETATM 8 C C6 PLM . . . J 4 -44.013 -8.605 -7.112 1 96.83 ? C6 PLM 601 B 1 HETATM 9 C C7 PLM . . . J 4 -43.313 -8.844 -8.445 1 91.41 ? C7 PLM 601 B 1 HETATM 10 C C8 PLM . . . J 4 -43.635 -7.741 -9.447 1 96.02 ? C8 PLM 601 B 1 HETATM 11 C C9 PLM . . . J 4 -42.829 -7.928 -10.727 1 101.36 ? C9 PLM 601 B 1 HETATM 12 C CA PLM . . . J 4 -43.047 -6.78 -11.707 1 92.63 ? CA PLM 601 B 1 HETATM 13 C CB PLM . . . J 4 -44.502 -6.693 -12.148 1 94.41 ? CB PLM 601 B 1 HETATM 14 C CC PLM . . . J 4 -44.674 -5.653 -13.25 1 87.14 ? CC PLM 601 B 1 HETATM 15 C CD PLM . . . J 4 -46.146 -5.322 -13.466 1 75.51 ? CD PLM 601 B 1 HETATM 16 C CE PLM . . . J 4 -46.791 -4.885 -12.156 1 90.5 ? CE PLM 601 B 1 HETATM 17 C CF PLM . . . J 4 -48.229 -4.43 -12.368 1 99.28 ? CF PLM 601 B 1 HETATM 18 C CG PLM . . . J 4 -48.901 -4.131 -11.045 1 96.89 ? CG PLM 601 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 18 #