data_5VNW # _model_server_result.job_id zcVXDdH--FoyGr74QrbUqA _model_server_result.datetime_utc '2025-01-10 19:01:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":605}' # _entry.id 5VNW # _exptl.entry_id 5VNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.318 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96.14 _cell.angle_beta 104.6 _cell.angle_gamma 104.02 _cell.entry_id 5VNW _cell.length_a 66.338 _cell.length_b 72.15 _cell.length_c 108.513 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,M,P 1 1 B,C,J,K,L,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf35 C SG CYS 22 C CYS 22 1_555 C SG CYS 95 C CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf36 D SG CYS 22 D CYS 22 1_555 D SG CYS 95 D CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C12 H24 O2' _chem_comp.formula_weight 200.318 _chem_comp.id DAO _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 DAO doub 96 n n O2 C1 DAO sing 97 n n O2 HO2 DAO sing 98 n n C1 C2 DAO sing 99 n n C2 C3 DAO sing 100 n n C2 H21 DAO sing 101 n n C2 H22 DAO sing 102 n n C3 C4 DAO sing 103 n n C3 H31 DAO sing 104 n n C3 H32 DAO sing 105 n n C4 C5 DAO sing 106 n n C4 H41 DAO sing 107 n n C4 H42 DAO sing 108 n n C5 C6 DAO sing 109 n n C5 H51 DAO sing 110 n n C5 H52 DAO sing 111 n n C6 C7 DAO sing 112 n n C6 H61 DAO sing 113 n n C6 H62 DAO sing 114 n n C7 C8 DAO sing 115 n n C7 H71 DAO sing 116 n n C7 H72 DAO sing 117 n n C8 C9 DAO sing 118 n n C8 H81 DAO sing 119 n n C8 H82 DAO sing 120 n n C9 C10 DAO sing 121 n n C9 H91 DAO sing 122 n n C9 H92 DAO sing 123 n n C10 C11 DAO sing 124 n n C10 H101 DAO sing 125 n n C10 H102 DAO sing 126 n n C11 C12 DAO sing 127 n n C11 H111 DAO sing 128 n n C11 H112 DAO sing 129 n n C12 H121 DAO sing 130 n n C12 H122 DAO sing 131 n n C12 H123 DAO sing 132 n n # _atom_sites.entry_id 5VNW _atom_sites.fract_transf_matrix[1][1] 0.015074 _atom_sites.fract_transf_matrix[1][2] 0.003765 _atom_sites.fract_transf_matrix[1][3] 0.004676 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014286 _atom_sites.fract_transf_matrix[2][3] 0.002598 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 601 70 GOL GOL . F 3 GOL A 1 602 71 GOL GOL . G 3 GOL A 1 603 72 GOL GOL . H 4 PLM A 1 604 73 PLM PLM . I 5 DAO A 1 605 75 DAO DAO . J 4 PLM B 1 601 74 PLM PLM . K 6 BUA B 1 602 77 BUA BUA . L 3 GOL C 1 201 76 GOL GOL . M 7 HOH A 1 701 10 HOH HOH . M 7 HOH A 2 702 58 HOH HOH . M 7 HOH A 3 703 59 HOH HOH . M 7 HOH A 4 704 11 HOH HOH . M 7 HOH A 5 705 60 HOH HOH . M 7 HOH A 6 706 7 HOH HOH . M 7 HOH A 7 707 15 HOH HOH . M 7 HOH A 8 708 52 HOH HOH . M 7 HOH A 9 709 42 HOH HOH . M 7 HOH A 10 710 61 HOH HOH . M 7 HOH A 11 711 14 HOH HOH . M 7 HOH A 12 712 3 HOH HOH . M 7 HOH A 13 713 30 HOH HOH . M 7 HOH A 14 714 1 HOH HOH . M 7 HOH A 15 715 53 HOH HOH . M 7 HOH A 16 716 54 HOH HOH . M 7 HOH A 17 717 34 HOH HOH . M 7 HOH A 18 718 62 HOH HOH . M 7 HOH A 19 719 41 HOH HOH . M 7 HOH A 20 720 55 HOH HOH . M 7 HOH A 21 721 33 HOH HOH . M 7 HOH A 22 722 69 HOH HOH . M 7 HOH A 23 723 67 HOH HOH . M 7 HOH A 24 724 9 HOH HOH . M 7 HOH A 25 725 50 HOH HOH . M 7 HOH A 26 726 22 HOH HOH . M 7 HOH A 27 727 32 HOH HOH . M 7 HOH A 28 728 16 HOH HOH . M 7 HOH A 29 729 45 HOH HOH . M 7 HOH A 30 730 51 HOH HOH . M 7 HOH A 31 731 66 HOH HOH . M 7 HOH A 32 732 35 HOH HOH . N 7 HOH B 1 701 5 HOH HOH . N 7 HOH B 2 702 2 HOH HOH . N 7 HOH B 3 703 6 HOH HOH . N 7 HOH B 4 704 27 HOH HOH . N 7 HOH B 5 705 47 HOH HOH . N 7 HOH B 6 706 25 HOH HOH . N 7 HOH B 7 707 31 HOH HOH . N 7 HOH B 8 708 17 HOH HOH . N 7 HOH B 9 709 26 HOH HOH . N 7 HOH B 10 710 38 HOH HOH . N 7 HOH B 11 711 46 HOH HOH . N 7 HOH B 12 712 68 HOH HOH . N 7 HOH B 13 713 36 HOH HOH . N 7 HOH B 14 714 49 HOH HOH . N 7 HOH B 15 715 56 HOH HOH . N 7 HOH B 16 716 37 HOH HOH . N 7 HOH B 17 717 12 HOH HOH . N 7 HOH B 18 718 29 HOH HOH . N 7 HOH B 19 719 28 HOH HOH . O 7 HOH C 1 301 23 HOH HOH . O 7 HOH C 2 302 63 HOH HOH . O 7 HOH C 3 303 8 HOH HOH . O 7 HOH C 4 304 64 HOH HOH . O 7 HOH C 5 305 20 HOH HOH . O 7 HOH C 6 306 44 HOH HOH . O 7 HOH C 7 307 4 HOH HOH . O 7 HOH C 8 308 19 HOH HOH . O 7 HOH C 9 309 13 HOH HOH . O 7 HOH C 10 310 18 HOH HOH . O 7 HOH C 11 311 24 HOH HOH . O 7 HOH C 12 312 48 HOH HOH . O 7 HOH C 13 313 21 HOH HOH . P 7 HOH D 1 201 65 HOH HOH . P 7 HOH D 2 202 43 HOH HOH . P 7 HOH D 3 203 39 HOH HOH . P 7 HOH D 4 204 57 HOH HOH . P 7 HOH D 5 205 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 DAO . . . I 5 -50.001 85.528 81.067 1 94.02 ? O1 DAO 605 A 1 HETATM 2 O O2 DAO . . . I 5 -52.18 85.739 81.104 1 91.38 ? O2 DAO 605 A 1 HETATM 3 C C1 DAO . . . I 5 -51.042 86.066 81.504 1 94.27 ? C1 DAO 605 A 1 HETATM 4 C C2 DAO . . . I 5 -50.906 87.378 82.238 1 84.63 ? C2 DAO 605 A 1 HETATM 5 C C3 DAO . . . I 5 -49.508 87.499 82.832 1 82.24 ? C3 DAO 605 A 1 HETATM 6 C C4 DAO . . . I 5 -49.313 88.884 83.435 1 80.15 ? C4 DAO 605 A 1 HETATM 7 C C5 DAO . . . I 5 -47.985 89.015 84.171 1 80.79 ? C5 DAO 605 A 1 HETATM 8 C C6 DAO . . . I 5 -46.812 88.569 83.308 1 83.05 ? C6 DAO 605 A 1 HETATM 9 C C7 DAO . . . I 5 -45.564 88.363 84.157 1 87.6 ? C7 DAO 605 A 1 HETATM 10 C C8 DAO . . . I 5 -44.509 87.571 83.396 1 89.2 ? C8 DAO 605 A 1 HETATM 11 C C9 DAO . . . I 5 -43.339 87.212 84.304 1 86.23 ? C9 DAO 605 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #