data_5VO0 # _model_server_result.job_id eAFO9U27HYfSdlmsSqjRQw _model_server_result.datetime_utc '2025-03-13 21:47:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":305}' # _entry.id 5VO0 # _exptl.entry_id 5VO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VO0 _cell.length_a 181.114 _cell.length_b 181.114 _cell.length_c 97.414 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 91 D CYS 140 1_555 D SG CYS 107 D CYS 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? covale ? covale1 B NZ LYS 92 B LYS 87 1_555 C C GLY 76 C GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale2 D CD2 HIS 39 D HIS 88 1_555 D SG CYS 57 D CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? covale ? covale3 E NZ LYS 92 E LYS 87 1_555 F C GLY 76 F GLY 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? metalc ? metalc1 A SG CYS 22 A CYS 71 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc2 A SG CYS 25 A CYS 74 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc3 A SG CYS 37 A CYS 86 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A NE2 HIS 39 A HIS 88 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 A SG CYS 42 A CYS 91 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc6 A SG CYS 45 A CYS 94 1_555 G ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc7 A SG CYS 57 A CYS 106 1_555 H ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc8 A OE1 GLU 78 A GLU 127 1_555 J K K . A K 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.35 ? metalc ? metalc9 A SG CYS 86 A CYS 135 1_555 I ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc10 A SG CYS 91 A CYS 140 1_555 I ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc11 A NE2 HIS 103 A HIS 152 1_555 I ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc12 A SG CYS 107 A CYS 156 1_555 I ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc13 J K K . A K 304 1_555 D OE1 GLU 78 D GLU 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc14 D SG CYS 22 D CYS 71 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc15 D SG CYS 25 D CYS 74 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc16 D SG CYS 37 D CYS 86 1_555 L ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc17 D NE2 HIS 39 D HIS 88 1_555 L ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc18 D SG CYS 42 D CYS 91 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc19 D SG CYS 45 D CYS 94 1_555 K ZN ZN . D ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc20 D SG CYS 57 D CYS 106 1_555 L ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc21 D OD1 ASP 60 D ASP 109 1_555 L ZN ZN . D ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.852 ? metalc ? metalc22 D SG CYS 86 D CYS 135 1_555 M ZN ZN . D ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc23 D SG CYS 91 D CYS 140 1_555 M ZN ZN . D ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc24 D NE2 HIS 103 D HIS 152 1_555 M ZN ZN . D ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc25 D SG CYS 107 D CYS 156 1_555 M ZN ZN . D ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc26 D SG CYS 114 D CYS 163 1_555 N ZN ZN . D ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc27 D SG CYS 117 D CYS 166 1_555 N ZN ZN . D ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc28 D NE2 HIS 129 D HIS 178 1_555 N ZN ZN . D ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc29 D SG CYS 134 D CYS 183 1_555 N ZN ZN . D ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc30 D SG CYS 141 D CYS 190 1_555 O ZN ZN . D ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc31 D SG CYS 144 D CYS 193 1_555 O ZN ZN . D ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc32 D NE2 HIS 156 D HIS 205 1_555 O ZN ZN . D ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc33 D SG CYS 160 D CYS 209 1_555 O ZN ZN . D ZN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VO0 _atom_sites.fract_transf_matrix[1][1] 0.005521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005521 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ZN A 1 301 1 ZN ZN . H 4 ZN A 1 302 2 ZN ZN . I 4 ZN A 1 303 3 ZN ZN . J 5 K A 1 304 1 K K . K 4 ZN D 1 301 4 ZN ZN . L 4 ZN D 1 302 5 ZN ZN . M 4 ZN D 1 303 6 ZN ZN . N 4 ZN D 1 304 7 ZN ZN . O 4 ZN D 1 305 8 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 4 _atom_site.Cartn_x 72.302 _atom_site.Cartn_y -60.839 _atom_site.Cartn_z 154.149 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 118.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 305 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #