data_5VO1 # _model_server_result.job_id gph_EDrhuMTcECjdXhi3ag _model_server_result.datetime_utc '2024-11-25 18:42:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5VO1 # _exptl.entry_id 5VO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{5-[(1R,5S,6r)-3-(oxetan-3-yl)-3-azabicyclo[3.1.0]hexan-6-yl]-1-(propan-2-yl)-1H-pyrazol-3-yl}-3-(trifluoromethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.3 _cell.angle_gamma 90 _cell.entry_id 5VO1 _cell.length_a 57.284 _cell.length_b 39.823 _cell.length_c 61.702 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H24 F3 N5 O' _chem_comp.formula_weight 407.433 _chem_comp.id 9FS _chem_comp.mon_nstd_flag . _chem_comp.name 5-{5-[(1R,5S,6r)-3-(oxetan-3-yl)-3-azabicyclo[3.1.0]hexan-6-yl]-1-(propan-2-yl)-1H-pyrazol-3-yl}-3-(trifluoromethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O28 C27 9FS sing 1 n n O28 C29 9FS sing 2 n n C27 C26 9FS sing 3 n n C29 C26 9FS sing 4 n n C23 N24 9FS sing 5 n n C23 C22 9FS sing 6 n n C26 N24 9FS sing 7 n n N24 C25 9FS sing 8 n n C22 C20 9FS sing 9 n n C22 C21 9FS sing 10 n n C3 C2 9FS sing 11 n n C20 C21 9FS sing 12 n n C20 C5 9FS sing 13 n n C25 C21 9FS sing 14 n n C5 N4 9FS sing 15 n y C5 C6 9FS doub 16 n y C2 N4 9FS sing 17 n n C2 C1 9FS sing 18 n n N4 N8 9FS sing 19 n y C6 C7 9FS sing 20 n y N8 C7 9FS doub 21 n y C7 C9 9FS sing 22 n n C9 C14 9FS doub 23 n y C9 C10 9FS sing 24 n y C14 N13 9FS sing 25 n y C10 C11 9FS doub 26 n y N13 C12 9FS doub 27 n y F18 C16 9FS sing 28 n n C11 C12 9FS sing 29 n y C11 C16 9FS sing 30 n n C12 N15 9FS sing 31 n n F17 C16 9FS sing 32 n n C16 F19 9FS sing 33 n n C14 H1 9FS sing 34 n n C6 H2 9FS sing 35 n n C10 H3 9FS sing 36 n n C3 H4 9FS sing 37 n n C3 H5 9FS sing 38 n n C3 H6 9FS sing 39 n n C1 H7 9FS sing 40 n n C1 H8 9FS sing 41 n n C1 H9 9FS sing 42 n n C2 H10 9FS sing 43 n n N15 H11 9FS sing 44 n n N15 H12 9FS sing 45 n n C20 H13 9FS sing 46 n n C21 H14 9FS sing 47 n n C22 H15 9FS sing 48 n n C23 H16 9FS sing 49 n n C23 H17 9FS sing 50 n n C25 H19 9FS sing 51 n n C25 H20 9FS sing 52 n n C26 H21 9FS sing 53 n n C27 H22 9FS sing 54 n n C27 H23 9FS sing 55 n n C29 H24 9FS sing 56 n n C29 H25 9FS sing 57 n n # _atom_sites.entry_id 5VO1 _atom_sites.fract_transf_matrix[1][1] 0.017457 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004776 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 9FS A 1 501 1 9FS DRG . C 3 HOH A 1 601 4 HOH HOH . C 3 HOH A 2 602 65 HOH HOH . C 3 HOH A 3 603 22 HOH HOH . C 3 HOH A 4 604 50 HOH HOH . C 3 HOH A 5 605 3 HOH HOH . C 3 HOH A 6 606 87 HOH HOH . C 3 HOH A 7 607 71 HOH HOH . C 3 HOH A 8 608 11 HOH HOH . C 3 HOH A 9 609 1 HOH HOH . C 3 HOH A 10 610 86 HOH HOH . C 3 HOH A 11 611 28 HOH HOH . C 3 HOH A 12 612 14 HOH HOH . C 3 HOH A 13 613 37 HOH HOH . C 3 HOH A 14 614 2 HOH HOH . C 3 HOH A 15 615 31 HOH HOH . C 3 HOH A 16 616 49 HOH HOH . C 3 HOH A 17 617 143 HOH HOH . C 3 HOH A 18 618 59 HOH HOH . C 3 HOH A 19 619 9 HOH HOH . C 3 HOH A 20 620 17 HOH HOH . C 3 HOH A 21 621 44 HOH HOH . C 3 HOH A 22 622 6 HOH HOH . C 3 HOH A 23 623 91 HOH HOH . C 3 HOH A 24 624 29 HOH HOH . C 3 HOH A 25 625 43 HOH HOH . C 3 HOH A 26 626 105 HOH HOH . C 3 HOH A 27 627 64 HOH HOH . C 3 HOH A 28 628 77 HOH HOH . C 3 HOH A 29 629 157 HOH HOH . C 3 HOH A 30 630 38 HOH HOH . C 3 HOH A 31 631 10 HOH HOH . C 3 HOH A 32 632 128 HOH HOH . C 3 HOH A 33 633 94 HOH HOH . C 3 HOH A 34 634 142 HOH HOH . C 3 HOH A 35 635 82 HOH HOH . C 3 HOH A 36 636 40 HOH HOH . C 3 HOH A 37 637 101 HOH HOH . C 3 HOH A 38 638 13 HOH HOH . C 3 HOH A 39 639 20 HOH HOH . C 3 HOH A 40 640 140 HOH HOH . C 3 HOH A 41 641 7 HOH HOH . C 3 HOH A 42 642 146 HOH HOH . C 3 HOH A 43 643 80 HOH HOH . C 3 HOH A 44 644 57 HOH HOH . C 3 HOH A 45 645 124 HOH HOH . C 3 HOH A 46 646 8 HOH HOH . C 3 HOH A 47 647 115 HOH HOH . C 3 HOH A 48 648 114 HOH HOH . C 3 HOH A 49 649 41 HOH HOH . C 3 HOH A 50 650 129 HOH HOH . C 3 HOH A 51 651 106 HOH HOH . C 3 HOH A 52 652 60 HOH HOH . C 3 HOH A 53 653 67 HOH HOH . C 3 HOH A 54 654 12 HOH HOH . C 3 HOH A 55 655 139 HOH HOH . C 3 HOH A 56 656 47 HOH HOH . C 3 HOH A 57 657 92 HOH HOH . C 3 HOH A 58 658 45 HOH HOH . C 3 HOH A 59 659 116 HOH HOH . C 3 HOH A 60 660 54 HOH HOH . C 3 HOH A 61 661 97 HOH HOH . C 3 HOH A 62 662 150 HOH HOH . C 3 HOH A 63 663 151 HOH HOH . C 3 HOH A 64 664 75 HOH HOH . C 3 HOH A 65 665 35 HOH HOH . C 3 HOH A 66 666 70 HOH HOH . C 3 HOH A 67 667 46 HOH HOH . C 3 HOH A 68 668 27 HOH HOH . C 3 HOH A 69 669 141 HOH HOH . C 3 HOH A 70 670 122 HOH HOH . C 3 HOH A 71 671 156 HOH HOH . C 3 HOH A 72 672 113 HOH HOH . C 3 HOH A 73 673 152 HOH HOH . C 3 HOH A 74 674 15 HOH HOH . C 3 HOH A 75 675 32 HOH HOH . C 3 HOH A 76 676 73 HOH HOH . C 3 HOH A 77 677 144 HOH HOH . C 3 HOH A 78 678 121 HOH HOH . C 3 HOH A 79 679 89 HOH HOH . C 3 HOH A 80 680 81 HOH HOH . C 3 HOH A 81 681 5 HOH HOH . C 3 HOH A 82 682 62 HOH HOH . C 3 HOH A 83 683 26 HOH HOH . C 3 HOH A 84 684 95 HOH HOH . C 3 HOH A 85 685 21 HOH HOH . C 3 HOH A 86 686 99 HOH HOH . C 3 HOH A 87 687 104 HOH HOH . C 3 HOH A 88 688 160 HOH HOH . C 3 HOH A 89 689 36 HOH HOH . C 3 HOH A 90 690 148 HOH HOH . C 3 HOH A 91 691 112 HOH HOH . C 3 HOH A 92 692 61 HOH HOH . C 3 HOH A 93 693 155 HOH HOH . C 3 HOH A 94 694 25 HOH HOH . C 3 HOH A 95 695 33 HOH HOH . C 3 HOH A 96 696 137 HOH HOH . C 3 HOH A 97 697 55 HOH HOH . C 3 HOH A 98 698 83 HOH HOH . C 3 HOH A 99 699 78 HOH HOH . C 3 HOH A 100 700 136 HOH HOH . C 3 HOH A 101 701 127 HOH HOH . C 3 HOH A 102 702 107 HOH HOH . C 3 HOH A 103 703 72 HOH HOH . C 3 HOH A 104 704 58 HOH HOH . C 3 HOH A 105 705 53 HOH HOH . C 3 HOH A 106 706 149 HOH HOH . C 3 HOH A 107 707 52 HOH HOH . C 3 HOH A 108 708 63 HOH HOH . C 3 HOH A 109 709 123 HOH HOH . C 3 HOH A 110 710 19 HOH HOH . C 3 HOH A 111 711 108 HOH HOH . C 3 HOH A 112 712 145 HOH HOH . C 3 HOH A 113 713 85 HOH HOH . C 3 HOH A 114 714 74 HOH HOH . C 3 HOH A 115 715 16 HOH HOH . C 3 HOH A 116 716 68 HOH HOH . C 3 HOH A 117 717 18 HOH HOH . C 3 HOH A 118 718 134 HOH HOH . C 3 HOH A 119 719 102 HOH HOH . C 3 HOH A 120 720 34 HOH HOH . C 3 HOH A 121 721 88 HOH HOH . C 3 HOH A 122 722 24 HOH HOH . C 3 HOH A 123 723 119 HOH HOH . C 3 HOH A 124 724 138 HOH HOH . C 3 HOH A 125 725 154 HOH HOH . C 3 HOH A 126 726 39 HOH HOH . C 3 HOH A 127 727 125 HOH HOH . C 3 HOH A 128 728 98 HOH HOH . C 3 HOH A 129 729 126 HOH HOH . C 3 HOH A 130 730 158 HOH HOH . C 3 HOH A 131 731 42 HOH HOH . C 3 HOH A 132 732 120 HOH HOH . C 3 HOH A 133 733 133 HOH HOH . C 3 HOH A 134 734 111 HOH HOH . C 3 HOH A 135 735 84 HOH HOH . C 3 HOH A 136 736 132 HOH HOH . C 3 HOH A 137 737 147 HOH HOH . C 3 HOH A 138 738 109 HOH HOH . C 3 HOH A 139 739 110 HOH HOH . C 3 HOH A 140 740 30 HOH HOH . C 3 HOH A 141 741 161 HOH HOH . C 3 HOH A 142 742 90 HOH HOH . C 3 HOH A 143 743 23 HOH HOH . C 3 HOH A 144 744 66 HOH HOH . C 3 HOH A 145 745 69 HOH HOH . C 3 HOH A 146 746 131 HOH HOH . C 3 HOH A 147 747 159 HOH HOH . C 3 HOH A 148 748 153 HOH HOH . C 3 HOH A 149 749 51 HOH HOH . C 3 HOH A 150 750 48 HOH HOH . C 3 HOH A 151 751 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 9FS . . . B 2 8.336 10.794 32.815 1 20.21 ? C14 9FS 501 A 1 HETATM 2 C C5 9FS . . . B 2 5.672 13.814 31.02 1 26.49 ? C5 9FS 501 A 1 HETATM 3 C C6 9FS . . . B 2 6.75 13.087 31.477 1 24.51 ? C6 9FS 501 A 1 HETATM 4 C C11 9FS . . . B 2 6.941 8.612 33.721 1 21.49 ? C11 9FS 501 A 1 HETATM 5 C C7 9FS . . . B 2 6.236 11.894 32.007 1 22.96 ? C7 9FS 501 A 1 HETATM 6 C C9 9FS . . . B 2 6.957 10.785 32.666 1 21.57 ? C9 9FS 501 A 1 HETATM 7 C C10 9FS . . . B 2 6.26 9.677 33.135 1 20.98 ? C10 9FS 501 A 1 HETATM 8 C C12 9FS . . . B 2 8.371 8.684 33.792 1 21.63 ? C12 9FS 501 A 1 HETATM 9 C C3 9FS . . . B 2 2.625 12.799 29.736 1 27.63 ? C3 9FS 501 A 1 HETATM 10 C C1 9FS . . . B 2 2.269 12.733 32.217 1 27.25 ? C1 9FS 501 A 1 HETATM 11 C C2 9FS . . . B 2 3.084 13.324 31.085 1 27.55 ? C2 9FS 501 A 1 HETATM 12 N N4 9FS . . . B 2 4.522 13.03 31.285 1 25.39 ? N4 9FS 501 A 1 HETATM 13 N N8 9FS . . . B 2 4.904 11.849 31.884 1 23.57 ? N8 9FS 501 A 1 HETATM 14 N N13 9FS . . . B 2 9.028 9.785 33.357 1 20.96 ? N13 9FS 501 A 1 HETATM 15 N N15 9FS . . . B 2 9.091 7.645 34.23 1 20.87 ? N15 9FS 501 A 1 HETATM 16 C C16 9FS . . . B 2 6.13 7.476 34.275 1 21.85 ? C16 9FS 501 A 1 HETATM 17 F F17 9FS . . . B 2 4.813 7.629 34.069 1 22.06 ? F17 9FS 501 A 1 HETATM 18 F F18 9FS . . . B 2 6.412 6.333 33.677 1 20.41 ? F18 9FS 501 A 1 HETATM 19 F F19 9FS . . . B 2 6.317 7.315 35.61 1 20.62 ? F19 9FS 501 A 1 HETATM 20 C C20 9FS . . . B 2 5.616 15.152 30.411 1 29.3 ? C20 9FS 501 A 1 HETATM 21 C C21 9FS . . . B 2 6.447 16.333 30.886 1 30.27 ? C21 9FS 501 A 1 HETATM 22 C C22 9FS . . . B 2 6.703 15.752 29.533 1 31.28 ? C22 9FS 501 A 1 HETATM 23 C C23 9FS . . . B 2 6.29 16.806 28.512 1 35.32 ? C23 9FS 501 A 1 HETATM 24 N N24 9FS . . . B 2 6.133 18.061 29.274 1 36.22 ? N24 9FS 501 A 1 HETATM 25 C C25 9FS . . . B 2 5.884 17.737 30.687 1 32.64 ? C25 9FS 501 A 1 HETATM 26 C C26 9FS . . . B 2 5.243 19.126 28.771 1 39.94 ? C26 9FS 501 A 1 HETATM 27 C C27 9FS . . . B 2 4.305 18.775 27.554 1 41.8 ? C27 9FS 501 A 1 HETATM 28 O O28 9FS . . . B 2 5.291 19.29 26.655 1 42.77 ? O28 9FS 501 A 1 HETATM 29 C C29 9FS . . . B 2 5.907 20.064 27.7 1 42.78 ? C29 9FS 501 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #