data_5VOG # _model_server_result.job_id vmiGdMWSuRvYJctFElLITg _model_server_result.datetime_utc '2024-11-14 23:55:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vog # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5VOG # _exptl.entry_id 5VOG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VOG _cell.length_a 81.27 _cell.length_b 103.93 _cell.length_c 105.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VOG _symmetry.cell_setting ? _symmetry.Int_Tables_number 22 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+1/2,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 40.635 0 52.77 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 90 A ASP 82 1_555 F MG MG . A MG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 C O1 EDO . A EDO 202 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc3 C O2 EDO . A EDO 202 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 D O2C G4P . A G4P 203 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc5 D O1D G4P . A G4P 203 1_555 E MG MG . A MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc6 E MG MG . A MG 204 1_555 G O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc7 E MG MG . A MG 204 1_555 G O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc8 F MG MG . A MG 205 1_555 G O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc9 F MG MG . A MG 205 1_555 G O HOH . A HOH 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc10 F MG MG . A MG 205 1_555 G O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc11 F MG MG . A MG 205 1_555 G O HOH . A HOH 369 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc12 F MG MG . A MG 205 1_555 G O HOH . A HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc13 F MG MG . A MG 205 1_555 G O HOH . A HOH 428 14_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc14 F MG MG . A MG 205 1_555 G O HOH . A HOH 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VOG _atom_sites.fract_transf_matrix[1][1] 0.012305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1 EDO EDO . C 2 EDO A 1 202 3 EDO EDO . D 3 G4P A 1 203 1 G4P G4P . E 4 MG A 1 204 1 MG MG . F 4 MG A 1 205 2 MG MG . G 5 HOH A 1 301 127 HOH HOH . G 5 HOH A 2 302 176 HOH HOH . G 5 HOH A 3 303 84 HOH HOH . G 5 HOH A 4 304 126 HOH HOH . G 5 HOH A 5 305 137 HOH HOH . G 5 HOH A 6 306 63 HOH HOH . G 5 HOH A 7 307 62 HOH HOH . G 5 HOH A 8 308 86 HOH HOH . G 5 HOH A 9 309 36 HOH HOH . G 5 HOH A 10 310 160 HOH HOH . G 5 HOH A 11 311 70 HOH HOH . G 5 HOH A 12 312 44 HOH HOH . G 5 HOH A 13 313 131 HOH HOH . G 5 HOH A 14 314 157 HOH HOH . G 5 HOH A 15 315 178 HOH HOH . G 5 HOH A 16 316 162 HOH HOH . G 5 HOH A 17 317 161 HOH HOH . G 5 HOH A 18 318 10 HOH HOH . G 5 HOH A 19 319 93 HOH HOH . G 5 HOH A 20 320 188 HOH HOH . G 5 HOH A 21 321 87 HOH HOH . G 5 HOH A 22 322 67 HOH HOH . G 5 HOH A 23 323 198 HOH HOH . G 5 HOH A 24 324 20 HOH HOH . G 5 HOH A 25 325 119 HOH HOH . G 5 HOH A 26 326 98 HOH HOH . G 5 HOH A 27 327 13 HOH HOH . G 5 HOH A 28 328 39 HOH HOH . G 5 HOH A 29 329 180 HOH HOH . G 5 HOH A 30 330 47 HOH HOH . G 5 HOH A 31 331 132 HOH HOH . G 5 HOH A 32 332 183 HOH HOH . G 5 HOH A 33 333 82 HOH HOH . G 5 HOH A 34 334 59 HOH HOH . G 5 HOH A 35 335 43 HOH HOH . G 5 HOH A 36 336 88 HOH HOH . G 5 HOH A 37 337 33 HOH HOH . G 5 HOH A 38 338 52 HOH HOH . G 5 HOH A 39 339 48 HOH HOH . G 5 HOH A 40 340 116 HOH HOH . G 5 HOH A 41 341 129 HOH HOH . G 5 HOH A 42 342 2 HOH HOH . G 5 HOH A 43 343 124 HOH HOH . G 5 HOH A 44 344 110 HOH HOH . G 5 HOH A 45 345 151 HOH HOH . G 5 HOH A 46 346 15 HOH HOH . G 5 HOH A 47 347 102 HOH HOH . G 5 HOH A 48 348 139 HOH HOH . G 5 HOH A 49 349 9 HOH HOH . G 5 HOH A 50 350 209 HOH HOH . G 5 HOH A 51 351 30 HOH HOH . G 5 HOH A 52 352 4 HOH HOH . G 5 HOH A 53 353 71 HOH HOH . G 5 HOH A 54 354 12 HOH HOH . G 5 HOH A 55 355 40 HOH HOH . G 5 HOH A 56 356 120 HOH HOH . G 5 HOH A 57 357 85 HOH HOH . G 5 HOH A 58 358 24 HOH HOH . G 5 HOH A 59 359 7 HOH HOH . G 5 HOH A 60 360 205 HOH HOH . G 5 HOH A 61 361 6 HOH HOH . G 5 HOH A 62 362 134 HOH HOH . G 5 HOH A 63 363 103 HOH HOH . G 5 HOH A 64 364 11 HOH HOH . G 5 HOH A 65 365 105 HOH HOH . G 5 HOH A 66 366 211 HOH HOH . G 5 HOH A 67 367 28 HOH HOH . G 5 HOH A 68 368 58 HOH HOH . G 5 HOH A 69 369 75 HOH HOH . G 5 HOH A 70 370 60 HOH HOH . G 5 HOH A 71 371 109 HOH HOH . G 5 HOH A 72 372 29 HOH HOH . G 5 HOH A 73 373 111 HOH HOH . G 5 HOH A 74 374 91 HOH HOH . G 5 HOH A 75 375 81 HOH HOH . G 5 HOH A 76 376 21 HOH HOH . G 5 HOH A 77 377 114 HOH HOH . G 5 HOH A 78 378 16 HOH HOH . G 5 HOH A 79 379 50 HOH HOH . G 5 HOH A 80 380 53 HOH HOH . G 5 HOH A 81 381 73 HOH HOH . G 5 HOH A 82 382 26 HOH HOH . G 5 HOH A 83 383 38 HOH HOH . G 5 HOH A 84 384 163 HOH HOH . G 5 HOH A 85 385 68 HOH HOH . G 5 HOH A 86 386 1 HOH HOH . G 5 HOH A 87 387 57 HOH HOH . G 5 HOH A 88 388 61 HOH HOH . G 5 HOH A 89 389 153 HOH HOH . G 5 HOH A 90 390 138 HOH HOH . G 5 HOH A 91 391 80 HOH HOH . G 5 HOH A 92 392 19 HOH HOH . G 5 HOH A 93 393 18 HOH HOH . G 5 HOH A 94 394 56 HOH HOH . G 5 HOH A 95 395 32 HOH HOH . G 5 HOH A 96 396 31 HOH HOH . G 5 HOH A 97 397 41 HOH HOH . G 5 HOH A 98 398 49 HOH HOH . G 5 HOH A 99 399 77 HOH HOH . G 5 HOH A 100 400 106 HOH HOH . G 5 HOH A 101 401 136 HOH HOH . G 5 HOH A 102 402 154 HOH HOH . G 5 HOH A 103 403 194 HOH HOH . G 5 HOH A 104 404 35 HOH HOH . G 5 HOH A 105 405 25 HOH HOH . G 5 HOH A 106 406 166 HOH HOH . G 5 HOH A 107 407 8 HOH HOH . G 5 HOH A 108 408 66 HOH HOH . G 5 HOH A 109 409 3 HOH HOH . G 5 HOH A 110 410 64 HOH HOH . G 5 HOH A 111 411 5 HOH HOH . G 5 HOH A 112 412 79 HOH HOH . G 5 HOH A 113 413 118 HOH HOH . G 5 HOH A 114 414 37 HOH HOH . G 5 HOH A 115 415 46 HOH HOH . G 5 HOH A 116 416 150 HOH HOH . G 5 HOH A 117 417 72 HOH HOH . G 5 HOH A 118 418 165 HOH HOH . G 5 HOH A 119 419 42 HOH HOH . G 5 HOH A 120 420 104 HOH HOH . G 5 HOH A 121 421 69 HOH HOH . G 5 HOH A 122 422 54 HOH HOH . G 5 HOH A 123 423 112 HOH HOH . G 5 HOH A 124 424 51 HOH HOH . G 5 HOH A 125 425 121 HOH HOH . G 5 HOH A 126 426 96 HOH HOH . G 5 HOH A 127 427 74 HOH HOH . G 5 HOH A 128 428 14 HOH HOH . G 5 HOH A 129 429 45 HOH HOH . G 5 HOH A 130 430 171 HOH HOH . G 5 HOH A 131 431 95 HOH HOH . G 5 HOH A 132 432 199 HOH HOH . G 5 HOH A 133 433 115 HOH HOH . G 5 HOH A 134 434 123 HOH HOH . G 5 HOH A 135 435 23 HOH HOH . G 5 HOH A 136 436 159 HOH HOH . G 5 HOH A 137 437 107 HOH HOH . G 5 HOH A 138 438 17 HOH HOH . G 5 HOH A 139 439 76 HOH HOH . G 5 HOH A 140 440 22 HOH HOH . G 5 HOH A 141 441 202 HOH HOH . G 5 HOH A 142 442 164 HOH HOH . G 5 HOH A 143 443 172 HOH HOH . G 5 HOH A 144 444 117 HOH HOH . G 5 HOH A 145 445 210 HOH HOH . G 5 HOH A 146 446 94 HOH HOH . G 5 HOH A 147 447 216 HOH HOH . G 5 HOH A 148 448 83 HOH HOH . G 5 HOH A 149 449 196 HOH HOH . G 5 HOH A 150 450 55 HOH HOH . G 5 HOH A 151 451 219 HOH HOH . G 5 HOH A 152 452 195 HOH HOH . G 5 HOH A 153 453 203 HOH HOH . G 5 HOH A 154 454 184 HOH HOH . G 5 HOH A 155 455 122 HOH HOH . G 5 HOH A 156 456 175 HOH HOH . G 5 HOH A 157 457 182 HOH HOH . G 5 HOH A 158 458 135 HOH HOH . G 5 HOH A 159 459 174 HOH HOH . G 5 HOH A 160 460 214 HOH HOH . G 5 HOH A 161 461 190 HOH HOH . G 5 HOH A 162 462 191 HOH HOH . G 5 HOH A 163 463 89 HOH HOH . G 5 HOH A 164 464 222 HOH HOH . G 5 HOH A 165 465 142 HOH HOH . G 5 HOH A 166 466 221 HOH HOH . G 5 HOH A 167 467 78 HOH HOH . G 5 HOH A 168 468 185 HOH HOH . G 5 HOH A 169 469 168 HOH HOH . G 5 HOH A 170 470 146 HOH HOH . G 5 HOH A 171 471 169 HOH HOH . G 5 HOH A 172 472 200 HOH HOH . G 5 HOH A 173 473 92 HOH HOH . G 5 HOH A 174 474 130 HOH HOH . G 5 HOH A 175 475 113 HOH HOH . G 5 HOH A 176 476 125 HOH HOH . G 5 HOH A 177 477 179 HOH HOH . G 5 HOH A 178 478 34 HOH HOH . G 5 HOH A 179 479 27 HOH HOH . G 5 HOH A 180 480 186 HOH HOH . G 5 HOH A 181 481 144 HOH HOH . G 5 HOH A 182 482 143 HOH HOH . G 5 HOH A 183 483 170 HOH HOH . G 5 HOH A 184 484 90 HOH HOH . G 5 HOH A 185 485 192 HOH HOH . G 5 HOH A 186 486 99 HOH HOH . G 5 HOH A 187 487 220 HOH HOH . G 5 HOH A 188 488 147 HOH HOH . G 5 HOH A 189 489 149 HOH HOH . G 5 HOH A 190 490 128 HOH HOH . G 5 HOH A 191 491 212 HOH HOH . G 5 HOH A 192 492 133 HOH HOH . G 5 HOH A 193 493 201 HOH HOH . G 5 HOH A 194 494 181 HOH HOH . G 5 HOH A 195 495 100 HOH HOH . G 5 HOH A 196 496 65 HOH HOH . G 5 HOH A 197 497 108 HOH HOH . G 5 HOH A 198 498 158 HOH HOH . G 5 HOH A 199 499 177 HOH HOH . G 5 HOH A 200 500 101 HOH HOH . G 5 HOH A 201 501 145 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.59 _atom_site.Cartn_y 24.454 _atom_site.Cartn_z 19.06 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 205 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #