data_5VON # _model_server_result.job_id yTJIS62tJOnyOOIYvya9MQ _model_server_result.datetime_utc '2024-10-10 09:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5von # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3001}' # _entry.id 5VON # _exptl.entry_id 5VON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VON _cell.length_a 55.186 _cell.length_b 55.186 _cell.length_c 197.113 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VON _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 5VON _atom_sites.fract_transf_matrix[1][1] 0.018121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 3001 3001 GOL GOL . C 3 HOH A 1 3101 70 HOH HOH . C 3 HOH A 2 3102 27 HOH HOH . C 3 HOH A 3 3103 66 HOH HOH . C 3 HOH A 4 3104 15 HOH HOH . C 3 HOH A 5 3105 1 HOH HOH . C 3 HOH A 6 3106 60 HOH HOH . C 3 HOH A 7 3107 41 HOH HOH . C 3 HOH A 8 3108 25 HOH HOH . C 3 HOH A 9 3109 18 HOH HOH . C 3 HOH A 10 3110 17 HOH HOH . C 3 HOH A 11 3111 76 HOH HOH . C 3 HOH A 12 3112 89 HOH HOH . C 3 HOH A 13 3113 57 HOH HOH . C 3 HOH A 14 3114 78 HOH HOH . C 3 HOH A 15 3115 3 HOH HOH . C 3 HOH A 16 3116 83 HOH HOH . C 3 HOH A 17 3117 24 HOH HOH . C 3 HOH A 18 3118 91 HOH HOH . C 3 HOH A 19 3119 50 HOH HOH . C 3 HOH A 20 3120 77 HOH HOH . C 3 HOH A 21 3121 38 HOH HOH . C 3 HOH A 22 3122 62 HOH HOH . C 3 HOH A 23 3123 9 HOH HOH . C 3 HOH A 24 3124 4 HOH HOH . C 3 HOH A 25 3125 40 HOH HOH . C 3 HOH A 26 3126 59 HOH HOH . C 3 HOH A 27 3127 8 HOH HOH . C 3 HOH A 28 3128 6 HOH HOH . C 3 HOH A 29 3129 67 HOH HOH . C 3 HOH A 30 3130 92 HOH HOH . C 3 HOH A 31 3131 30 HOH HOH . C 3 HOH A 32 3132 65 HOH HOH . C 3 HOH A 33 3133 11 HOH HOH . C 3 HOH A 34 3134 85 HOH HOH . C 3 HOH A 35 3135 82 HOH HOH . C 3 HOH A 36 3136 16 HOH HOH . C 3 HOH A 37 3137 53 HOH HOH . C 3 HOH A 38 3138 22 HOH HOH . C 3 HOH A 39 3139 72 HOH HOH . C 3 HOH A 40 3140 37 HOH HOH . C 3 HOH A 41 3141 34 HOH HOH . C 3 HOH A 42 3142 56 HOH HOH . C 3 HOH A 43 3143 13 HOH HOH . C 3 HOH A 44 3144 87 HOH HOH . C 3 HOH A 45 3145 43 HOH HOH . C 3 HOH A 46 3146 55 HOH HOH . C 3 HOH A 47 3147 36 HOH HOH . C 3 HOH A 48 3148 23 HOH HOH . C 3 HOH A 49 3149 64 HOH HOH . C 3 HOH A 50 3150 58 HOH HOH . C 3 HOH A 51 3151 84 HOH HOH . C 3 HOH A 52 3152 42 HOH HOH . C 3 HOH A 53 3153 86 HOH HOH . C 3 HOH A 54 3154 20 HOH HOH . C 3 HOH A 55 3155 94 HOH HOH . C 3 HOH A 56 3156 10 HOH HOH . C 3 HOH A 57 3157 79 HOH HOH . C 3 HOH A 58 3158 35 HOH HOH . C 3 HOH A 59 3159 54 HOH HOH . C 3 HOH A 60 3160 75 HOH HOH . C 3 HOH A 61 3161 61 HOH HOH . C 3 HOH A 62 3162 93 HOH HOH . C 3 HOH A 63 3163 73 HOH HOH . C 3 HOH A 64 3164 69 HOH HOH . C 3 HOH A 65 3165 44 HOH HOH . C 3 HOH A 66 3166 45 HOH HOH . C 3 HOH A 67 3167 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -5.643 -4.122 0.664 0.5 50.62 ? C1 GOL 3001 A 1 HETATM 2 O O1 GOL . . . B 2 -6.133 -2.961 1.332 0.5 54.74 ? O1 GOL 3001 A 1 HETATM 3 C C2 GOL . . . B 2 -4.326 -3.759 0.016 0.5 48.08 ? C2 GOL 3001 A 1 HETATM 4 O O2 GOL . . . B 2 -3.569 -3.022 0.975 0.5 47.08 ? O2 GOL 3001 A 1 HETATM 5 C C3 GOL . . . B 2 -3.624 -5.046 -0.384 0.5 46.02 ? C3 GOL 3001 A 1 HETATM 6 O O3 GOL . . . B 2 -4.513 -5.818 -1.207 0.5 43.97 ? O3 GOL 3001 A 1 HETATM 7 H H11 GOL . . . B 2 -6.279 -4.424 -0.003 0.5 50.62 ? H11 GOL 3001 A 1 HETATM 8 H H12 GOL . . . B 2 -5.523 -4.851 1.293 0.5 50.62 ? H12 GOL 3001 A 1 HETATM 9 H HO1 GOL . . . B 2 -6.867 -3.138 1.7 0.5 54.74 ? HO1 GOL 3001 A 1 HETATM 10 H H2 GOL . . . B 2 -4.441 -3.217 -0.78 0.5 48.08 ? H2 GOL 3001 A 1 HETATM 11 H HO2 GOL . . . B 2 -2.828 -2.807 0.642 0.5 47.08 ? HO2 GOL 3001 A 1 HETATM 12 H H31 GOL . . . B 2 -3.372 -5.551 0.405 0.5 46.02 ? H31 GOL 3001 A 1 HETATM 13 H H32 GOL . . . B 2 -2.806 -4.847 -0.867 0.5 46.02 ? H32 GOL 3001 A 1 HETATM 14 H HO3 GOL . . . B 2 -4.82 -6.46 -0.762 0.5 43.97 ? HO3 GOL 3001 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #