data_5VOP
#
_model_server_result.job_id            vKHrsBycQRXeXzGxLEVn0g 
_model_server_result.datetime_utc      '2025-07-01 07:57:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vop 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":3004}' 
#
_entry.id    5VOP 
#
_exptl.entry_id    5VOP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.1 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRATE ANION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VOP 
_cell.length_a            111.482 
_cell.length_b            111.482 
_cell.length_c            242.679 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VOP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,K 1 1 
B,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 24 A ASN 376 1_555 G NA NA . A NA 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc2 A OG1 THR 26 A THR 378 1_555 G NA NA . A NA 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc3 A OG SER 61 A SER 413 1_555 G NA NA . A NA 3005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc4 G NA NA . A NA 3005 1_555 K O HOH . A HOH 3118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? 
metalc ? metalc5 G NA NA . A NA 3005 1_555 K O HOH . A HOH 3163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc6 B OD1 ASN 24 B ASN 376 1_555 J NA NA . B NA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? 
metalc ? metalc7 B OG1 THR 26 B THR 378 1_555 J NA NA . B NA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc8 B OG SER 61 B SER 413 1_555 J NA NA . B NA 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc9 J NA NA . B NA 3002 1_555 L O HOH . B HOH 3127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
#
_chem_comp.formula           'C6 H5 O7 -3' 
_chem_comp.formula_weight    189.1 
_chem_comp.id                FLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRATE ANION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAC CA FLC sing 130 n n 
CAC OA1 FLC doub 131 n n 
CAC OA2 FLC sing 132 n n 
CA CB FLC sing 133 n n 
CA HA1 FLC sing 134 n n 
CA HA2 FLC sing 135 n n 
CB CBC FLC sing 136 n n 
CB CG FLC sing 137 n n 
CB OHB FLC sing 138 n n 
CBC OB1 FLC doub 139 n n 
CBC OB2 FLC sing 140 n n 
CG CGC FLC sing 141 n n 
CG HG1 FLC sing 142 n n 
CG HG2 FLC sing 143 n n 
CGC OG1 FLC doub 144 n n 
CGC OG2 FLC sing 145 n n 
OHB HOB FLC sing 146 n n 
#
_atom_sites.entry_id                     5VOP 
_atom_sites.fract_transf_matrix[1][1]    0.00897 
_atom_sites.fract_transf_matrix[1][2]    0.005179 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010358 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004121 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 C2F A 1 3001 3001 C2F C2F . 
D 3 GOL A 1 3002 3002 GOL GOL . 
E 3 GOL A 1 3003 3003 GOL GOL . 
F 4 FLC A 1 3004 3004 FLC FLC . 
G 5 NA A 1 3005 3005 NA NA . 
H 3 GOL A 1 3006 3002 GOL GOL . 
I 2 C2F B 1 3001 3001 C2F C2F . 
J 5 NA B 1 3002 3005 NA NA . 
K 6 HOH A 1 3101 89 HOH HOH . 
K 6 HOH A 2 3102 71 HOH HOH . 
K 6 HOH A 3 3103 100 HOH HOH . 
K 6 HOH A 4 3104 67 HOH HOH . 
K 6 HOH A 5 3105 44 HOH HOH . 
K 6 HOH A 6 3106 117 HOH HOH . 
K 6 HOH A 7 3107 64 HOH HOH . 
K 6 HOH A 8 3108 140 HOH HOH . 
K 6 HOH A 9 3109 34 HOH HOH . 
K 6 HOH A 10 3110 10 HOH HOH . 
K 6 HOH A 11 3111 29 HOH HOH . 
K 6 HOH A 12 3112 45 HOH HOH . 
K 6 HOH A 13 3113 114 HOH HOH . 
K 6 HOH A 14 3114 102 HOH HOH . 
K 6 HOH A 15 3115 58 HOH HOH . 
K 6 HOH A 16 3116 42 HOH HOH . 
K 6 HOH A 17 3117 55 HOH HOH . 
K 6 HOH A 18 3118 9 HOH HOH . 
K 6 HOH A 19 3119 47 HOH HOH . 
K 6 HOH A 20 3120 122 HOH HOH . 
K 6 HOH A 21 3121 126 HOH HOH . 
K 6 HOH A 22 3122 113 HOH HOH . 
K 6 HOH A 23 3123 95 HOH HOH . 
K 6 HOH A 24 3124 61 HOH HOH . 
K 6 HOH A 25 3125 69 HOH HOH . 
K 6 HOH A 26 3126 30 HOH HOH . 
K 6 HOH A 27 3127 27 HOH HOH . 
K 6 HOH A 28 3128 32 HOH HOH . 
K 6 HOH A 29 3129 81 HOH HOH . 
K 6 HOH A 30 3130 109 HOH HOH . 
K 6 HOH A 31 3131 20 HOH HOH . 
K 6 HOH A 32 3132 23 HOH HOH . 
K 6 HOH A 33 3133 25 HOH HOH . 
K 6 HOH A 34 3134 107 HOH HOH . 
K 6 HOH A 35 3135 33 HOH HOH . 
K 6 HOH A 36 3136 41 HOH HOH . 
K 6 HOH A 37 3137 17 HOH HOH . 
K 6 HOH A 38 3138 87 HOH HOH . 
K 6 HOH A 39 3139 13 HOH HOH . 
K 6 HOH A 40 3140 3 HOH HOH . 
K 6 HOH A 41 3141 1 HOH HOH . 
K 6 HOH A 42 3142 28 HOH HOH . 
K 6 HOH A 43 3143 12 HOH HOH . 
K 6 HOH A 44 3144 70 HOH HOH . 
K 6 HOH A 45 3145 6 HOH HOH . 
K 6 HOH A 46 3146 93 HOH HOH . 
K 6 HOH A 47 3147 11 HOH HOH . 
K 6 HOH A 48 3148 56 HOH HOH . 
K 6 HOH A 49 3149 86 HOH HOH . 
K 6 HOH A 50 3150 116 HOH HOH . 
K 6 HOH A 51 3151 80 HOH HOH . 
K 6 HOH A 52 3152 51 HOH HOH . 
K 6 HOH A 53 3153 53 HOH HOH . 
K 6 HOH A 54 3154 14 HOH HOH . 
K 6 HOH A 55 3155 24 HOH HOH . 
K 6 HOH A 56 3156 110 HOH HOH . 
K 6 HOH A 57 3157 131 HOH HOH . 
K 6 HOH A 58 3158 128 HOH HOH . 
K 6 HOH A 59 3159 75 HOH HOH . 
K 6 HOH A 60 3160 94 HOH HOH . 
K 6 HOH A 61 3161 121 HOH HOH . 
K 6 HOH A 62 3162 57 HOH HOH . 
K 6 HOH A 63 3163 21 HOH HOH . 
K 6 HOH A 64 3164 106 HOH HOH . 
K 6 HOH A 65 3165 26 HOH HOH . 
K 6 HOH A 66 3166 92 HOH HOH . 
K 6 HOH A 67 3167 50 HOH HOH . 
K 6 HOH A 68 3168 112 HOH HOH . 
K 6 HOH A 69 3169 36 HOH HOH . 
K 6 HOH A 70 3170 99 HOH HOH . 
K 6 HOH A 71 3171 90 HOH HOH . 
K 6 HOH A 72 3172 136 HOH HOH . 
K 6 HOH A 73 3173 118 HOH HOH . 
K 6 HOH A 74 3174 108 HOH HOH . 
K 6 HOH A 75 3175 111 HOH HOH . 
K 6 HOH A 76 3176 105 HOH HOH . 
K 6 HOH A 77 3177 120 HOH HOH . 
K 6 HOH A 78 3178 60 HOH HOH . 
K 6 HOH A 79 3179 119 HOH HOH . 
K 6 HOH A 80 3180 59 HOH HOH . 
K 6 HOH A 81 3181 115 HOH HOH . 
L 6 HOH B 1 3101 15 HOH HOH . 
L 6 HOH B 2 3102 54 HOH HOH . 
L 6 HOH B 3 3103 98 HOH HOH . 
L 6 HOH B 4 3104 31 HOH HOH . 
L 6 HOH B 5 3105 63 HOH HOH . 
L 6 HOH B 6 3106 72 HOH HOH . 
L 6 HOH B 7 3107 52 HOH HOH . 
L 6 HOH B 8 3108 78 HOH HOH . 
L 6 HOH B 9 3109 79 HOH HOH . 
L 6 HOH B 10 3110 135 HOH HOH . 
L 6 HOH B 11 3111 104 HOH HOH . 
L 6 HOH B 12 3112 19 HOH HOH . 
L 6 HOH B 13 3113 96 HOH HOH . 
L 6 HOH B 14 3114 18 HOH HOH . 
L 6 HOH B 15 3115 127 HOH HOH . 
L 6 HOH B 16 3116 62 HOH HOH . 
L 6 HOH B 17 3117 48 HOH HOH . 
L 6 HOH B 18 3118 7 HOH HOH . 
L 6 HOH B 19 3119 88 HOH HOH . 
L 6 HOH B 20 3120 2 HOH HOH . 
L 6 HOH B 21 3121 130 HOH HOH . 
L 6 HOH B 22 3122 35 HOH HOH . 
L 6 HOH B 23 3123 43 HOH HOH . 
L 6 HOH B 24 3124 83 HOH HOH . 
L 6 HOH B 25 3125 101 HOH HOH . 
L 6 HOH B 26 3126 82 HOH HOH . 
L 6 HOH B 27 3127 49 HOH HOH . 
L 6 HOH B 28 3128 16 HOH HOH . 
L 6 HOH B 29 3129 129 HOH HOH . 
L 6 HOH B 30 3130 68 HOH HOH . 
L 6 HOH B 31 3131 103 HOH HOH . 
L 6 HOH B 32 3132 91 HOH HOH . 
L 6 HOH B 33 3133 22 HOH HOH . 
L 6 HOH B 34 3134 125 HOH HOH . 
L 6 HOH B 35 3135 84 HOH HOH . 
L 6 HOH B 36 3136 97 HOH HOH . 
L 6 HOH B 37 3137 37 HOH HOH . 
L 6 HOH B 38 3138 46 HOH HOH . 
L 6 HOH B 39 3139 39 HOH HOH . 
L 6 HOH B 40 3140 138 HOH HOH . 
L 6 HOH B 41 3141 133 HOH HOH . 
L 6 HOH B 42 3142 134 HOH HOH . 
L 6 HOH B 43 3143 76 HOH HOH . 
L 6 HOH B 44 3144 137 HOH HOH . 
L 6 HOH B 45 3145 65 HOH HOH . 
L 6 HOH B 46 3146 124 HOH HOH . 
L 6 HOH B 47 3147 66 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAC FLC . . . F 4 -59.55 37.851 -20.033 0.5 47.51 ? CAC FLC 3004 A 1 
HETATM 2 C CA FLC . . . F 4 -60.181 36.496 -19.754 0.5 48.64 ? CA FLC 3004 A 1 
HETATM 3 C CB FLC . . . F 4 -59.493 35.218 -20.222 0.5 50.17 ? CB FLC 3004 A 1 
HETATM 4 C CBC FLC . . . F 4 -58.011 35.399 -20.357 0.5 46.87 ? CBC FLC 3004 A 1 
HETATM 5 C CG FLC . . . F 4 -59.656 34.075 -19.244 0.5 55.23 ? CG FLC 3004 A 1 
HETATM 6 C CGC FLC . . . F 4 -59.862 32.827 -20.076 0.5 56.44 ? CGC FLC 3004 A 1 
HETATM 7 O OA1 FLC . . . F 4 -59.89 38.451 -21.055 0.5 47.06 ? OA1 FLC 3004 A 1 
HETATM 8 O OA2 FLC . . . F 4 -58.754 38.368 -19.215 0.5 46.51 ? OA2 FLC 3004 A 1 
HETATM 9 O OB1 FLC . . . F 4 -57.51 35.331 -21.495 0.5 40.21 ? OB1 FLC 3004 A 1 
HETATM 10 O OB2 FLC . . . F 4 -57.346 35.586 -19.311 0.5 45.64 ? OB2 FLC 3004 A 1 
HETATM 11 O OG1 FLC . . . F 4 -58.974 32.484 -20.889 0.5 54.45 ? OG1 FLC 3004 A 1 
HETATM 12 O OG2 FLC . . . F 4 -60.928 32.193 -19.931 0.5 63.42 ? OG2 FLC 3004 A 1 
HETATM 13 O OHB FLC . . . F 4 -60.126 34.711 -21.412 0.5 52 ? OHB FLC 3004 A 1 
HETATM 14 H HA1 FLC . . . F 4 -61.068 36.505 -20.147 0.5 48.64 ? HA1 FLC 3004 A 1 
HETATM 15 H HA2 FLC . . . F 4 -60.297 36.425 -18.794 0.5 48.64 ? HA2 FLC 3004 A 1 
HETATM 16 H HG1 FLC . . . F 4 -60.413 34.228 -18.657 0.5 55.23 ? HG1 FLC 3004 A 1 
HETATM 17 H HG2 FLC . . . F 4 -58.872 33.989 -18.68 0.5 55.23 ? HG2 FLC 3004 A 1 
HETATM 18 H HOB FLC . . . F 4 -59.547 34.362 -21.911 0.5 52 ? HOB FLC 3004 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           18 
#