data_5VP0
#
_model_server_result.job_id            32cjVw5jaA_hc5S_vlRpng 
_model_server_result.datetime_utc      '2025-01-09 22:46:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vp0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1001}' 
#
_entry.id    5VP0 
#
_exptl.entry_id    5VP0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.77 
_cell.angle_gamma         90 
_cell.entry_id            5VP0 
_cell.length_a            166.704 
_cell.length_b            74.265 
_cell.length_c            91.171 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VP0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,M 1 1 
C,J,K,L,O 1 3 
B,G,H,I,N 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 30.838156 0 -85.797199 
3 'crystal symmetry operation' 3_556 x+1/2,y+1/2,z+1 1 0 0 0 1 0 0 0 1 52.513844 37.1325 85.797199 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 G N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 86 A HIS 660 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 A NE2 HIS 122 A HIS 696 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc3 A OD2 ASP 123 A ASP 697 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc4 A OD1 ASP 123 A ASP 697 1_555 E MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc5 A OD1 ASP 234 A ASP 808 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc6 D ZN ZN . A ZN 1001 1_555 M O HOH . A HOH 1133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc7 E MG MG . A MG 1002 1_555 M O HOH . A HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc8 E MG MG . A MG 1002 1_555 M O HOH . A HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc9 E MG MG . A MG 1002 1_555 M O HOH . A HOH 1122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc10 E MG MG . A MG 1002 1_555 M O HOH . A HOH 1134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc11 B NE2 HIS 86 B HIS 660 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc12 B NE2 HIS 122 B HIS 696 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc13 B OD2 ASP 123 B ASP 697 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc14 B OD1 ASP 123 B ASP 697 1_555 H MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc15 B OD1 ASP 234 B ASP 808 1_555 G ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc16 G ZN ZN . B ZN 1001 1_555 N O HOH . B HOH 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc17 G ZN ZN . B ZN 1001 1_555 N O HOH . B HOH 1141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc18 H MG MG . B MG 1002 1_555 N O HOH . B HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc19 H MG MG . B MG 1002 1_555 N O HOH . B HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc20 H MG MG . B MG 1002 1_555 N O HOH . B HOH 1119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc21 H MG MG . B MG 1002 1_555 N O HOH . B HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
metalc ? metalc22 H MG MG . B MG 1002 1_555 N O HOH . B HOH 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc23 C NE2 HIS 86 C HIS 660 1_555 J ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc24 C NE2 HIS 122 C HIS 696 1_555 J ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc25 C OD2 ASP 123 C ASP 697 1_555 J ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc26 C OD1 ASP 123 C ASP 697 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc27 C OD1 ASP 234 C ASP 808 1_555 J ZN ZN . C ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc28 J ZN ZN . C ZN 1001 1_555 O O HOH . C HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc29 J ZN ZN . C ZN 1001 1_555 O O HOH . C HOH 1123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc30 K MG MG . C MG 1002 1_555 O O HOH . C HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc31 K MG MG . C MG 1002 1_555 O O HOH . C HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc32 K MG MG . C MG 1002 1_555 O O HOH . C HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc33 K MG MG . C MG 1002 1_555 O O HOH . C HOH 1109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? 
metalc ? metalc34 K MG MG . C MG 1002 1_555 O O HOH . C HOH 1121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VP0 
_atom_sites.fract_transf_matrix[1][1]    0.005999 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002157 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013465 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 ZN A 1 1001 1001 ZN ZN . 
E 3 MG A 1 1002 1002 MG MG . 
F 4 9GJ A 1 1003 1100 9GJ LIG . 
G 2 ZN B 1 1001 1001 ZN ZN . 
H 3 MG B 1 1002 1002 MG MG . 
I 4 9GJ B 1 1003 1100 9GJ LIG . 
J 2 ZN C 1 1001 1001 ZN ZN . 
K 3 MG C 1 1002 1002 MG MG . 
L 4 9GJ C 1 1003 1100 9GJ LIG . 
M 5 HOH A 1 1101 99 HOH HOH . 
M 5 HOH A 2 1102 117 HOH HOH . 
M 5 HOH A 3 1103 34 HOH HOH . 
M 5 HOH A 4 1104 122 HOH HOH . 
M 5 HOH A 5 1105 97 HOH HOH . 
M 5 HOH A 6 1106 24 HOH HOH . 
M 5 HOH A 7 1107 2 HOH HOH . 
M 5 HOH A 8 1108 110 HOH HOH . 
M 5 HOH A 9 1109 119 HOH HOH . 
M 5 HOH A 10 1110 81 HOH HOH . 
M 5 HOH A 11 1111 23 HOH HOH . 
M 5 HOH A 12 1112 1 HOH HOH . 
M 5 HOH A 13 1113 138 HOH HOH . 
M 5 HOH A 14 1114 109 HOH HOH . 
M 5 HOH A 15 1115 123 HOH HOH . 
M 5 HOH A 16 1116 145 HOH HOH . 
M 5 HOH A 17 1117 22 HOH HOH . 
M 5 HOH A 18 1118 21 HOH HOH . 
M 5 HOH A 19 1119 141 HOH HOH . 
M 5 HOH A 20 1120 108 HOH HOH . 
M 5 HOH A 21 1121 124 HOH HOH . 
M 5 HOH A 22 1122 100 HOH HOH . 
M 5 HOH A 23 1123 83 HOH HOH . 
M 5 HOH A 24 1124 106 HOH HOH . 
M 5 HOH A 25 1125 90 HOH HOH . 
M 5 HOH A 26 1126 82 HOH HOH . 
M 5 HOH A 27 1127 27 HOH HOH . 
M 5 HOH A 28 1128 121 HOH HOH . 
M 5 HOH A 29 1129 140 HOH HOH . 
M 5 HOH A 30 1130 146 HOH HOH . 
M 5 HOH A 31 1131 96 HOH HOH . 
M 5 HOH A 32 1132 25 HOH HOH . 
M 5 HOH A 33 1133 118 HOH HOH . 
M 5 HOH A 34 1134 101 HOH HOH . 
M 5 HOH A 35 1135 20 HOH HOH . 
M 5 HOH A 36 1136 3 HOH HOH . 
M 5 HOH A 37 1137 147 HOH HOH . 
M 5 HOH A 38 1138 4 HOH HOH . 
M 5 HOH A 39 1139 120 HOH HOH . 
M 5 HOH A 40 1140 88 HOH HOH . 
M 5 HOH A 41 1141 111 HOH HOH . 
M 5 HOH A 42 1142 28 HOH HOH . 
M 5 HOH A 43 1143 125 HOH HOH . 
M 5 HOH A 44 1144 79 HOH HOH . 
M 5 HOH A 45 1145 18 HOH HOH . 
M 5 HOH A 46 1146 26 HOH HOH . 
M 5 HOH A 47 1147 17 HOH HOH . 
M 5 HOH A 48 1148 92 HOH HOH . 
M 5 HOH A 49 1149 85 HOH HOH . 
N 5 HOH B 1 1101 151 HOH HOH . 
N 5 HOH B 2 1102 52 HOH HOH . 
N 5 HOH B 3 1103 104 HOH HOH . 
N 5 HOH B 4 1104 35 HOH HOH . 
N 5 HOH B 5 1105 30 HOH HOH . 
N 5 HOH B 6 1106 133 HOH HOH . 
N 5 HOH B 7 1107 37 HOH HOH . 
N 5 HOH B 8 1108 39 HOH HOH . 
N 5 HOH B 9 1109 57 HOH HOH . 
N 5 HOH B 10 1110 53 HOH HOH . 
N 5 HOH B 11 1111 149 HOH HOH . 
N 5 HOH B 12 1112 94 HOH HOH . 
N 5 HOH B 13 1113 48 HOH HOH . 
N 5 HOH B 14 1114 5 HOH HOH . 
N 5 HOH B 15 1115 62 HOH HOH . 
N 5 HOH B 16 1116 64 HOH HOH . 
N 5 HOH B 17 1117 43 HOH HOH . 
N 5 HOH B 18 1118 47 HOH HOH . 
N 5 HOH B 19 1119 134 HOH HOH . 
N 5 HOH B 20 1120 59 HOH HOH . 
N 5 HOH B 21 1121 29 HOH HOH . 
N 5 HOH B 22 1122 32 HOH HOH . 
N 5 HOH B 23 1123 132 HOH HOH . 
N 5 HOH B 24 1124 148 HOH HOH . 
N 5 HOH B 25 1125 102 HOH HOH . 
N 5 HOH B 26 1126 51 HOH HOH . 
N 5 HOH B 27 1127 38 HOH HOH . 
N 5 HOH B 28 1128 46 HOH HOH . 
N 5 HOH B 29 1129 55 HOH HOH . 
N 5 HOH B 30 1130 49 HOH HOH . 
N 5 HOH B 31 1131 61 HOH HOH . 
N 5 HOH B 32 1132 115 HOH HOH . 
N 5 HOH B 33 1133 95 HOH HOH . 
N 5 HOH B 34 1134 42 HOH HOH . 
N 5 HOH B 35 1135 131 HOH HOH . 
N 5 HOH B 36 1136 54 HOH HOH . 
N 5 HOH B 37 1137 45 HOH HOH . 
N 5 HOH B 38 1138 40 HOH HOH . 
N 5 HOH B 39 1139 93 HOH HOH . 
N 5 HOH B 40 1140 150 HOH HOH . 
N 5 HOH B 41 1141 135 HOH HOH . 
N 5 HOH B 42 1142 41 HOH HOH . 
N 5 HOH B 43 1143 63 HOH HOH . 
N 5 HOH B 44 1144 58 HOH HOH . 
N 5 HOH B 45 1145 36 HOH HOH . 
N 5 HOH B 46 1146 56 HOH HOH . 
N 5 HOH B 47 1147 136 HOH HOH . 
N 5 HOH B 48 1148 107 HOH HOH . 
N 5 HOH B 49 1149 44 HOH HOH . 
N 5 HOH B 50 1150 31 HOH HOH . 
N 5 HOH B 51 1151 91 HOH HOH . 
N 5 HOH B 52 1152 137 HOH HOH . 
O 5 HOH C 1 1101 70 HOH HOH . 
O 5 HOH C 2 1102 128 HOH HOH . 
O 5 HOH C 3 1103 12 HOH HOH . 
O 5 HOH C 4 1104 9 HOH HOH . 
O 5 HOH C 5 1105 76 HOH HOH . 
O 5 HOH C 6 1106 143 HOH HOH . 
O 5 HOH C 7 1107 142 HOH HOH . 
O 5 HOH C 8 1108 144 HOH HOH . 
O 5 HOH C 9 1109 13 HOH HOH . 
O 5 HOH C 10 1110 7 HOH HOH . 
O 5 HOH C 11 1111 68 HOH HOH . 
O 5 HOH C 12 1112 74 HOH HOH . 
O 5 HOH C 13 1113 129 HOH HOH . 
O 5 HOH C 14 1114 6 HOH HOH . 
O 5 HOH C 15 1115 116 HOH HOH . 
O 5 HOH C 16 1116 152 HOH HOH . 
O 5 HOH C 17 1117 75 HOH HOH . 
O 5 HOH C 18 1118 66 HOH HOH . 
O 5 HOH C 19 1119 112 HOH HOH . 
O 5 HOH C 20 1120 67 HOH HOH . 
O 5 HOH C 21 1121 14 HOH HOH . 
O 5 HOH C 22 1122 71 HOH HOH . 
O 5 HOH C 23 1123 11 HOH HOH . 
O 5 HOH C 24 1124 60 HOH HOH . 
O 5 HOH C 25 1125 73 HOH HOH . 
O 5 HOH C 26 1126 127 HOH HOH . 
O 5 HOH C 27 1127 126 HOH HOH . 
O 5 HOH C 28 1128 65 HOH HOH . 
O 5 HOH C 29 1129 69 HOH HOH . 
O 5 HOH C 30 1130 130 HOH HOH . 
O 5 HOH C 31 1131 15 HOH HOH . 
O 5 HOH C 32 1132 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               33.311 
_atom_site.Cartn_y               -2.579 
_atom_site.Cartn_z               -18.483 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        31.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1001 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           538 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           1 
#