data_5VP3
#
_model_server_result.job_id            ldofsj2xSMJPtfP6czhlvA 
_model_server_result.datetime_utc      '2024-11-22 17:56:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vp3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":306}' 
#
_entry.id    5VP3 
#
_exptl.entry_id    5VP3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              58.082 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'THIOCYANATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VP3 
_cell.length_a            72.614 
_cell.length_b            72.614 
_cell.length_c            81.429 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VP3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 44 A ASP 44 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc2 A OD1 ASP 46 A ASP 46 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 A OD1 ASP 48 A ASP 48 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? 
metalc ? metalc4 A O LYS 50 A LYS 50 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc5 A OE2 GLU 55 A GLU 55 1_555 B CD CD . A CD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc6 A NE2 HIS 82 A HIS 82 1_555 E CD CD . A CD 304 6_654 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc7 A OD1 ASP 136 A ASP 136 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc8 A OD1 ASP 140 A ASP 140 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc9 A O THR 142 A THR 142 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc10 A OE1 GLU 147 A GLU 147 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc11 A OE2 GLU 147 A GLU 147 1_555 C CD CD . A CD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc12 A OD1 ASP 170 A ASP 170 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc13 A OG1 THR 174 A THR 174 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc14 A O LYS 176 A LYS 176 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc15 A OE1 GLU 178 A GLU 178 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? 
metalc ? metalc16 A OE1 GLU 181 A GLU 181 1_555 D CD CD . A CD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc17 A ND1 HIS 184 A HIS 184 1_555 F NI NI . A NI 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc18 A OE1 GLU 192 A GLU 192 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? 
metalc ? metalc19 A OE2 GLU 192 A GLU 192 1_555 E CD CD . A CD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc20 B CD CD . A CD 301 1_555 H O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc21 E CD CD . A CD 304 1_555 H O HOH . A HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc22 E CD CD . A CD 304 1_555 H O HOH . A HOH 496 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc23 F NI NI . A NI 305 1_555 H O HOH . A HOH 463 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc24 F NI NI . A NI 305 1_555 H O HOH . A HOH 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc25 F NI NI . A NI 305 1_555 H O HOH . A HOH 515 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? 
#
_chem_comp.formula           'C N S -1' 
_chem_comp.formula_weight    58.082 
_chem_comp.id                SCN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'THIOCYANATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S C SCN sing 264 n n 
C N SCN trip 265 n n 
#
_atom_sites.entry_id                     5VP3 
_atom_sites.fract_transf_matrix[1][1]    0.013771 
_atom_sites.fract_transf_matrix[1][2]    0.007951 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012281 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 301 1 CD CD . 
C 2 CD A 1 302 2 CD CD . 
D 2 CD A 1 303 3 CD CD . 
E 2 CD A 1 304 4 CD CD . 
F 3 NI A 1 305 1 NI NI . 
G 4 SCN A 1 306 1 SCN SCN . 
H 5 HOH A 1 401 10 HOH HOH . 
H 5 HOH A 2 402 78 HOH HOH . 
H 5 HOH A 3 403 68 HOH HOH . 
H 5 HOH A 4 404 52 HOH HOH . 
H 5 HOH A 5 405 30 HOH HOH . 
H 5 HOH A 6 406 79 HOH HOH . 
H 5 HOH A 7 407 54 HOH HOH . 
H 5 HOH A 8 408 18 HOH HOH . 
H 5 HOH A 9 409 107 HOH HOH . 
H 5 HOH A 10 410 47 HOH HOH . 
H 5 HOH A 11 411 46 HOH HOH . 
H 5 HOH A 12 412 56 HOH HOH . 
H 5 HOH A 13 413 119 HOH HOH . 
H 5 HOH A 14 414 124 HOH HOH . 
H 5 HOH A 15 415 42 HOH HOH . 
H 5 HOH A 16 416 34 HOH HOH . 
H 5 HOH A 17 417 66 HOH HOH . 
H 5 HOH A 18 418 13 HOH HOH . 
H 5 HOH A 19 419 35 HOH HOH . 
H 5 HOH A 20 420 1 HOH HOH . 
H 5 HOH A 21 421 7 HOH HOH . 
H 5 HOH A 22 422 55 HOH HOH . 
H 5 HOH A 23 423 8 HOH HOH . 
H 5 HOH A 24 424 39 HOH HOH . 
H 5 HOH A 25 425 48 HOH HOH . 
H 5 HOH A 26 426 5 HOH HOH . 
H 5 HOH A 27 427 49 HOH HOH . 
H 5 HOH A 28 428 14 HOH HOH . 
H 5 HOH A 29 429 57 HOH HOH . 
H 5 HOH A 30 430 16 HOH HOH . 
H 5 HOH A 31 431 45 HOH HOH . 
H 5 HOH A 32 432 123 HOH HOH . 
H 5 HOH A 33 433 29 HOH HOH . 
H 5 HOH A 34 434 74 HOH HOH . 
H 5 HOH A 35 435 3 HOH HOH . 
H 5 HOH A 36 436 95 HOH HOH . 
H 5 HOH A 37 437 23 HOH HOH . 
H 5 HOH A 38 438 51 HOH HOH . 
H 5 HOH A 39 439 4 HOH HOH . 
H 5 HOH A 40 440 100 HOH HOH . 
H 5 HOH A 41 441 12 HOH HOH . 
H 5 HOH A 42 442 33 HOH HOH . 
H 5 HOH A 43 443 31 HOH HOH . 
H 5 HOH A 44 444 53 HOH HOH . 
H 5 HOH A 45 445 37 HOH HOH . 
H 5 HOH A 46 446 36 HOH HOH . 
H 5 HOH A 47 447 44 HOH HOH . 
H 5 HOH A 48 448 91 HOH HOH . 
H 5 HOH A 49 449 127 HOH HOH . 
H 5 HOH A 50 450 77 HOH HOH . 
H 5 HOH A 51 451 41 HOH HOH . 
H 5 HOH A 52 452 9 HOH HOH . 
H 5 HOH A 53 453 2 HOH HOH . 
H 5 HOH A 54 454 121 HOH HOH . 
H 5 HOH A 55 455 86 HOH HOH . 
H 5 HOH A 56 456 59 HOH HOH . 
H 5 HOH A 57 457 19 HOH HOH . 
H 5 HOH A 58 458 40 HOH HOH . 
H 5 HOH A 59 459 58 HOH HOH . 
H 5 HOH A 60 460 15 HOH HOH . 
H 5 HOH A 61 461 28 HOH HOH . 
H 5 HOH A 62 462 114 HOH HOH . 
H 5 HOH A 63 463 61 HOH HOH . 
H 5 HOH A 64 464 11 HOH HOH . 
H 5 HOH A 65 465 43 HOH HOH . 
H 5 HOH A 66 466 128 HOH HOH . 
H 5 HOH A 67 467 26 HOH HOH . 
H 5 HOH A 68 468 24 HOH HOH . 
H 5 HOH A 69 469 89 HOH HOH . 
H 5 HOH A 70 470 70 HOH HOH . 
H 5 HOH A 71 471 111 HOH HOH . 
H 5 HOH A 72 472 81 HOH HOH . 
H 5 HOH A 73 473 50 HOH HOH . 
H 5 HOH A 74 474 104 HOH HOH . 
H 5 HOH A 75 475 20 HOH HOH . 
H 5 HOH A 76 476 25 HOH HOH . 
H 5 HOH A 77 477 132 HOH HOH . 
H 5 HOH A 78 478 76 HOH HOH . 
H 5 HOH A 79 479 92 HOH HOH . 
H 5 HOH A 80 480 93 HOH HOH . 
H 5 HOH A 81 481 6 HOH HOH . 
H 5 HOH A 82 482 80 HOH HOH . 
H 5 HOH A 83 483 122 HOH HOH . 
H 5 HOH A 84 484 129 HOH HOH . 
H 5 HOH A 85 485 88 HOH HOH . 
H 5 HOH A 86 486 27 HOH HOH . 
H 5 HOH A 87 487 67 HOH HOH . 
H 5 HOH A 88 488 109 HOH HOH . 
H 5 HOH A 89 489 113 HOH HOH . 
H 5 HOH A 90 490 38 HOH HOH . 
H 5 HOH A 91 491 96 HOH HOH . 
H 5 HOH A 92 492 17 HOH HOH . 
H 5 HOH A 93 493 22 HOH HOH . 
H 5 HOH A 94 494 84 HOH HOH . 
H 5 HOH A 95 495 32 HOH HOH . 
H 5 HOH A 96 496 72 HOH HOH . 
H 5 HOH A 97 497 60 HOH HOH . 
H 5 HOH A 98 498 82 HOH HOH . 
H 5 HOH A 99 499 62 HOH HOH . 
H 5 HOH A 100 500 75 HOH HOH . 
H 5 HOH A 101 501 87 HOH HOH . 
H 5 HOH A 102 502 94 HOH HOH . 
H 5 HOH A 103 503 105 HOH HOH . 
H 5 HOH A 104 504 130 HOH HOH . 
H 5 HOH A 105 505 125 HOH HOH . 
H 5 HOH A 106 506 101 HOH HOH . 
H 5 HOH A 107 507 69 HOH HOH . 
H 5 HOH A 108 508 73 HOH HOH . 
H 5 HOH A 109 509 98 HOH HOH . 
H 5 HOH A 110 510 112 HOH HOH . 
H 5 HOH A 111 511 131 HOH HOH . 
H 5 HOH A 112 512 83 HOH HOH . 
H 5 HOH A 113 513 99 HOH HOH . 
H 5 HOH A 114 514 97 HOH HOH . 
H 5 HOH A 115 515 118 HOH HOH . 
H 5 HOH A 116 516 110 HOH HOH . 
H 5 HOH A 117 517 63 HOH HOH . 
H 5 HOH A 118 518 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SCN . . . G 4 15.636 71.843 -35.519 1 28.64 ? S SCN 306 A 1 
HETATM 2 C C SCN . . . G 4 17.093 72.485 -35.854 1 49.06 ? C SCN 306 A 1 
HETATM 3 N N SCN . . . G 4 18.131 72.935 -36.081 1 53.04 ? N SCN 306 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           3 
#