data_5VP7 # _model_server_result.job_id gCZpIrQBy8GGLBtZUCm6ug _model_server_result.datetime_utc '2024-11-22 10:03:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vp7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5VP7 # _exptl.entry_id 5VP7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VP7 _cell.length_a 93.773 _cell.length_b 93.773 _cell.length_c 119.918 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VP7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,J 1 1 B,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A O ALA 19 A ALA 18 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc3 A O HIS 28 A HIS 27 1_555 F NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 C O3B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc5 D MG MG . A MG 202 1_555 J O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc6 D MG MG . A MG 202 1_555 J O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc7 D MG MG . A MG 202 1_555 J O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc8 D MG MG . A MG 202 1_555 J O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc9 B OG SER 18 F SER 17 1_555 H MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc10 B O ALA 19 F ALA 18 1_555 I NA NA . F NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? metalc ? metalc11 B O HIS 28 F HIS 27 1_555 I NA NA . F NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc12 G O2B GDP . F GDP 201 1_555 H MG MG . F MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc13 H MG MG . F MG 202 1_555 K O HOH . F HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc14 H MG MG . F MG 202 1_555 K O HOH . F HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc15 H MG MG . F MG 202 1_555 K O HOH . F HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc16 H MG MG . F MG 202 1_555 K O HOH . F HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VP7 _atom_sites.fract_transf_matrix[1][1] 0.010664 _atom_sites.fract_transf_matrix[1][2] 0.006157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 MG A 1 202 202 MG MG . E 4 PGE A 1 203 203 PGE PGE . F 5 NA A 1 204 204 NA NA . G 2 GDP F 1 201 201 GDP GDP . H 3 MG F 1 202 202 MG MG . I 5 NA F 1 203 203 NA NA . J 6 HOH A 1 301 303 HOH HOH . J 6 HOH A 2 302 302 HOH HOH . J 6 HOH A 3 303 311 HOH HOH . J 6 HOH A 4 304 306 HOH HOH . J 6 HOH A 5 305 315 HOH HOH . J 6 HOH A 6 306 332 HOH HOH . J 6 HOH A 7 307 313 HOH HOH . J 6 HOH A 8 308 304 HOH HOH . J 6 HOH A 9 309 316 HOH HOH . J 6 HOH A 10 310 320 HOH HOH . J 6 HOH A 11 311 310 HOH HOH . J 6 HOH A 12 312 307 HOH HOH . J 6 HOH A 13 313 308 HOH HOH . J 6 HOH A 14 314 312 HOH HOH . J 6 HOH A 15 315 314 HOH HOH . J 6 HOH A 16 316 305 HOH HOH . J 6 HOH A 17 317 328 HOH HOH . J 6 HOH A 18 318 324 HOH HOH . J 6 HOH A 19 319 322 HOH HOH . J 6 HOH A 20 320 318 HOH HOH . J 6 HOH A 21 321 317 HOH HOH . J 6 HOH A 22 322 331 HOH HOH . J 6 HOH A 23 323 327 HOH HOH . J 6 HOH A 24 324 301 HOH HOH . J 6 HOH A 25 325 319 HOH HOH . J 6 HOH A 26 326 326 HOH HOH . J 6 HOH A 27 327 321 HOH HOH . J 6 HOH A 28 328 323 HOH HOH . J 6 HOH A 29 329 327 HOH HOH . J 6 HOH A 30 330 325 HOH HOH . J 6 HOH A 31 331 309 HOH HOH . J 6 HOH A 32 332 334 HOH HOH . J 6 HOH A 33 333 329 HOH HOH . J 6 HOH A 34 334 335 HOH HOH . J 6 HOH A 35 335 342 HOH HOH . J 6 HOH A 36 336 333 HOH HOH . J 6 HOH A 37 337 339 HOH HOH . J 6 HOH A 38 338 336 HOH HOH . J 6 HOH A 39 339 338 HOH HOH . J 6 HOH A 40 340 344 HOH HOH . J 6 HOH A 41 341 340 HOH HOH . J 6 HOH A 42 342 341 HOH HOH . J 6 HOH A 43 343 350 HOH HOH . J 6 HOH A 44 344 356 HOH HOH . J 6 HOH A 45 345 347 HOH HOH . J 6 HOH A 46 346 362 HOH HOH . J 6 HOH A 47 347 330 HOH HOH . J 6 HOH A 48 348 349 HOH HOH . J 6 HOH A 49 349 345 HOH HOH . J 6 HOH A 50 350 348 HOH HOH . J 6 HOH A 51 351 352 HOH HOH . J 6 HOH A 52 352 353 HOH HOH . J 6 HOH A 53 353 365 HOH HOH . J 6 HOH A 54 354 354 HOH HOH . J 6 HOH A 55 355 351 HOH HOH . J 6 HOH A 56 356 358 HOH HOH . J 6 HOH A 57 357 360 HOH HOH . J 6 HOH A 58 358 343 HOH HOH . J 6 HOH A 59 359 357 HOH HOH . J 6 HOH A 60 360 366 HOH HOH . J 6 HOH A 61 361 355 HOH HOH . J 6 HOH A 62 362 363 HOH HOH . J 6 HOH A 63 363 346 HOH HOH . J 6 HOH A 64 364 359 HOH HOH . J 6 HOH A 65 365 367 HOH HOH . J 6 HOH A 66 366 361 HOH HOH . J 6 HOH A 67 367 378 HOH HOH . J 6 HOH A 68 368 368 HOH HOH . J 6 HOH A 69 369 369 HOH HOH . J 6 HOH A 70 370 379 HOH HOH . J 6 HOH A 71 371 375 HOH HOH . J 6 HOH A 72 372 374 HOH HOH . J 6 HOH A 73 373 370 HOH HOH . J 6 HOH A 74 374 364 HOH HOH . J 6 HOH A 75 375 372 HOH HOH . J 6 HOH A 76 376 377 HOH HOH . J 6 HOH A 77 377 376 HOH HOH . J 6 HOH A 78 378 380 HOH HOH . J 6 HOH A 79 379 371 HOH HOH . J 6 HOH A 80 380 383 HOH HOH . J 6 HOH A 81 381 373 HOH HOH . J 6 HOH A 82 382 382 HOH HOH . J 6 HOH A 83 383 381 HOH HOH . J 6 HOH A 84 384 384 HOH HOH . J 6 HOH A 85 385 386 HOH HOH . J 6 HOH A 86 386 388 HOH HOH . J 6 HOH A 87 387 385 HOH HOH . J 6 HOH A 88 388 387 HOH HOH . J 6 HOH A 89 389 391 HOH HOH . J 6 HOH A 90 390 389 HOH HOH . J 6 HOH A 91 391 390 HOH HOH . J 6 HOH A 92 392 392 HOH HOH . J 6 HOH A 93 393 393 HOH HOH . J 6 HOH A 94 394 396 HOH HOH . J 6 HOH A 95 395 395 HOH HOH . K 6 HOH F 1 301 301 HOH HOH . K 6 HOH F 2 302 302 HOH HOH . K 6 HOH F 3 303 303 HOH HOH . K 6 HOH F 4 304 311 HOH HOH . K 6 HOH F 5 305 304 HOH HOH . K 6 HOH F 6 306 312 HOH HOH . K 6 HOH F 7 307 307 HOH HOH . K 6 HOH F 8 308 310 HOH HOH . K 6 HOH F 9 309 322 HOH HOH . K 6 HOH F 10 310 306 HOH HOH . K 6 HOH F 11 311 305 HOH HOH . K 6 HOH F 12 312 342 HOH HOH . K 6 HOH F 13 313 313 HOH HOH . K 6 HOH F 14 314 330 HOH HOH . K 6 HOH F 15 315 308 HOH HOH . K 6 HOH F 16 316 309 HOH HOH . K 6 HOH F 17 317 318 HOH HOH . K 6 HOH F 18 318 317 HOH HOH . K 6 HOH F 19 319 333 HOH HOH . K 6 HOH F 20 320 324 HOH HOH . K 6 HOH F 21 321 315 HOH HOH . K 6 HOH F 22 322 319 HOH HOH . K 6 HOH F 23 323 320 HOH HOH . K 6 HOH F 24 324 326 HOH HOH . K 6 HOH F 25 325 334 HOH HOH . K 6 HOH F 26 326 323 HOH HOH . K 6 HOH F 27 327 328 HOH HOH . K 6 HOH F 28 328 316 HOH HOH . K 6 HOH F 29 329 325 HOH HOH . K 6 HOH F 30 330 321 HOH HOH . K 6 HOH F 31 331 335 HOH HOH . K 6 HOH F 32 332 349 HOH HOH . K 6 HOH F 33 333 337 HOH HOH . K 6 HOH F 34 334 344 HOH HOH . K 6 HOH F 35 335 331 HOH HOH . K 6 HOH F 36 336 337 HOH HOH . K 6 HOH F 37 337 341 HOH HOH . K 6 HOH F 38 338 338 HOH HOH . K 6 HOH F 39 339 340 HOH HOH . K 6 HOH F 40 340 345 HOH HOH . K 6 HOH F 41 341 339 HOH HOH . K 6 HOH F 42 342 343 HOH HOH . K 6 HOH F 43 343 336 HOH HOH . K 6 HOH F 44 344 347 HOH HOH . K 6 HOH F 45 345 348 HOH HOH . K 6 HOH F 46 346 350 HOH HOH . K 6 HOH F 47 347 346 HOH HOH . K 6 HOH F 48 348 353 HOH HOH . K 6 HOH F 49 349 352 HOH HOH . K 6 HOH F 50 350 314 HOH HOH . K 6 HOH F 51 351 354 HOH HOH . K 6 HOH F 52 352 356 HOH HOH . K 6 HOH F 53 353 358 HOH HOH . K 6 HOH F 54 354 357 HOH HOH . K 6 HOH F 55 355 351 HOH HOH . K 6 HOH F 56 356 369 HOH HOH . K 6 HOH F 57 357 364 HOH HOH . K 6 HOH F 58 358 372 HOH HOH . K 6 HOH F 59 359 363 HOH HOH . K 6 HOH F 60 360 355 HOH HOH . K 6 HOH F 61 361 329 HOH HOH . K 6 HOH F 62 362 362 HOH HOH . K 6 HOH F 63 363 370 HOH HOH . K 6 HOH F 64 364 361 HOH HOH . K 6 HOH F 65 365 365 HOH HOH . K 6 HOH F 66 366 359 HOH HOH . K 6 HOH F 67 367 360 HOH HOH . K 6 HOH F 68 368 368 HOH HOH . K 6 HOH F 69 369 366 HOH HOH . K 6 HOH F 70 370 378 HOH HOH . K 6 HOH F 71 371 373 HOH HOH . K 6 HOH F 72 372 377 HOH HOH . K 6 HOH F 73 373 379 HOH HOH . K 6 HOH F 74 374 374 HOH HOH . K 6 HOH F 75 375 380 HOH HOH . K 6 HOH F 76 376 376 HOH HOH . K 6 HOH F 77 377 375 HOH HOH . K 6 HOH F 78 378 384 HOH HOH . K 6 HOH F 79 379 388 HOH HOH . K 6 HOH F 80 380 385 HOH HOH . K 6 HOH F 81 381 371 HOH HOH . K 6 HOH F 82 382 367 HOH HOH . K 6 HOH F 83 383 381 HOH HOH . K 6 HOH F 84 384 382 HOH HOH . K 6 HOH F 85 385 387 HOH HOH . K 6 HOH F 86 386 389 HOH HOH . K 6 HOH F 87 387 383 HOH HOH . K 6 HOH F 88 388 386 HOH HOH . K 6 HOH F 89 389 391 HOH HOH . K 6 HOH F 90 390 392 HOH HOH . K 6 HOH F 91 391 390 HOH HOH . K 6 HOH F 92 392 393 HOH HOH . K 6 HOH F 93 393 395 HOH HOH . K 6 HOH F 94 394 394 HOH HOH . K 6 HOH F 95 395 397 HOH HOH . K 6 HOH F 96 396 396 HOH HOH . K 6 HOH F 97 397 399 HOH HOH . K 6 HOH F 98 398 398 HOH HOH . K 6 HOH F 99 399 400 HOH HOH . K 6 HOH F 100 400 401 HOH HOH . K 6 HOH F 101 401 402 HOH HOH . K 6 HOH F 102 402 403 HOH HOH . K 6 HOH F 103 403 404 HOH HOH . K 6 HOH F 104 404 394 HOH HOH . K 6 HOH F 105 405 406 HOH HOH . K 6 HOH F 106 406 405 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.093 _atom_site.Cartn_y -16.373 _atom_site.Cartn_z 9.573 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.35 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #