data_5VPI
#
_model_server_result.job_id            P0x97yrXaDrepwvYMyldmg 
_model_server_result.datetime_utc      '2024-11-25 16:22:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vpi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    5VPI 
#
_exptl.entry_id    5VPI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VPI 
_cell.length_a            94.792 
_cell.length_b            94.792 
_cell.length_c            121.48 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VPI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? 
metalc ? metalc2 C O3G GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc3 C O2B GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc4 D MG MG . A MG 202 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc5 D MG MG . A MG 202 1_555 G O HOH . A HOH 355 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc6 D MG MG . A MG 202 1_555 G O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc7 B OG SER 18 B SER 17 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc8 E O3G GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc9 E O1B GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc10 F MG MG . B MG 202 1_555 H O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc11 F MG MG . B MG 202 1_555 H O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc12 F MG MG . B MG 202 1_555 H O HOH . B HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VPI 
_atom_sites.fract_transf_matrix[1][1]    0.010549 
_atom_sites.fract_transf_matrix[1][2]    0.006091 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012181 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GTP A 1 201 1 GTP GTP . 
D 3 MG A 1 202 1 MG MG . 
E 2 GTP B 1 201 2 GTP GTP . 
F 3 MG B 1 202 2 MG MG . 
G 4 HOH A 1 301 130 HOH HOH . 
G 4 HOH A 2 302 142 HOH HOH . 
G 4 HOH A 3 303 83 HOH HOH . 
G 4 HOH A 4 304 109 HOH HOH . 
G 4 HOH A 5 305 129 HOH HOH . 
G 4 HOH A 6 306 71 HOH HOH . 
G 4 HOH A 7 307 98 HOH HOH . 
G 4 HOH A 8 308 122 HOH HOH . 
G 4 HOH A 9 309 73 HOH HOH . 
G 4 HOH A 10 310 2 HOH HOH . 
G 4 HOH A 11 311 93 HOH HOH . 
G 4 HOH A 12 312 132 HOH HOH . 
G 4 HOH A 13 313 115 HOH HOH . 
G 4 HOH A 14 314 86 HOH HOH . 
G 4 HOH A 15 315 40 HOH HOH . 
G 4 HOH A 16 316 69 HOH HOH . 
G 4 HOH A 17 317 52 HOH HOH . 
G 4 HOH A 18 318 49 HOH HOH . 
G 4 HOH A 19 319 72 HOH HOH . 
G 4 HOH A 20 320 20 HOH HOH . 
G 4 HOH A 21 321 22 HOH HOH . 
G 4 HOH A 22 322 24 HOH HOH . 
G 4 HOH A 23 323 31 HOH HOH . 
G 4 HOH A 24 324 110 HOH HOH . 
G 4 HOH A 25 325 39 HOH HOH . 
G 4 HOH A 26 326 54 HOH HOH . 
G 4 HOH A 27 327 28 HOH HOH . 
G 4 HOH A 28 328 68 HOH HOH . 
G 4 HOH A 29 329 57 HOH HOH . 
G 4 HOH A 30 330 92 HOH HOH . 
G 4 HOH A 31 331 128 HOH HOH . 
G 4 HOH A 32 332 131 HOH HOH . 
G 4 HOH A 33 333 61 HOH HOH . 
G 4 HOH A 34 334 94 HOH HOH . 
G 4 HOH A 35 335 149 HOH HOH . 
G 4 HOH A 36 336 151 HOH HOH . 
G 4 HOH A 37 337 82 HOH HOH . 
G 4 HOH A 38 338 150 HOH HOH . 
G 4 HOH A 39 339 56 HOH HOH . 
G 4 HOH A 40 340 114 HOH HOH . 
G 4 HOH A 41 341 13 HOH HOH . 
G 4 HOH A 42 342 14 HOH HOH . 
G 4 HOH A 43 343 80 HOH HOH . 
G 4 HOH A 44 344 147 HOH HOH . 
G 4 HOH A 45 345 6 HOH HOH . 
G 4 HOH A 46 346 90 HOH HOH . 
G 4 HOH A 47 347 127 HOH HOH . 
G 4 HOH A 48 348 44 HOH HOH . 
G 4 HOH A 49 349 9 HOH HOH . 
G 4 HOH A 50 350 106 HOH HOH . 
G 4 HOH A 51 351 46 HOH HOH . 
G 4 HOH A 52 352 76 HOH HOH . 
G 4 HOH A 53 353 144 HOH HOH . 
G 4 HOH A 54 354 81 HOH HOH . 
G 4 HOH A 55 355 1 HOH HOH . 
G 4 HOH A 56 356 125 HOH HOH . 
G 4 HOH A 57 357 7 HOH HOH . 
G 4 HOH A 58 358 78 HOH HOH . 
G 4 HOH A 59 359 143 HOH HOH . 
G 4 HOH A 60 360 99 HOH HOH . 
G 4 HOH A 61 361 21 HOH HOH . 
G 4 HOH A 62 362 89 HOH HOH . 
G 4 HOH A 63 363 16 HOH HOH . 
G 4 HOH A 64 364 12 HOH HOH . 
G 4 HOH A 65 365 118 HOH HOH . 
G 4 HOH A 66 366 70 HOH HOH . 
G 4 HOH A 67 367 36 HOH HOH . 
G 4 HOH A 68 368 95 HOH HOH . 
G 4 HOH A 69 369 91 HOH HOH . 
G 4 HOH A 70 370 35 HOH HOH . 
G 4 HOH A 71 371 34 HOH HOH . 
G 4 HOH A 72 372 50 HOH HOH . 
G 4 HOH A 73 373 111 HOH HOH . 
G 4 HOH A 74 374 108 HOH HOH . 
G 4 HOH A 75 375 59 HOH HOH . 
G 4 HOH A 76 376 146 HOH HOH . 
G 4 HOH A 77 377 123 HOH HOH . 
G 4 HOH A 78 378 120 HOH HOH . 
G 4 HOH A 79 379 117 HOH HOH . 
G 4 HOH A 80 380 162 HOH HOH . 
H 4 HOH B 1 301 158 HOH HOH . 
H 4 HOH B 2 302 138 HOH HOH . 
H 4 HOH B 3 303 116 HOH HOH . 
H 4 HOH B 4 304 160 HOH HOH . 
H 4 HOH B 5 305 141 HOH HOH . 
H 4 HOH B 6 306 136 HOH HOH . 
H 4 HOH B 7 307 140 HOH HOH . 
H 4 HOH B 8 308 75 HOH HOH . 
H 4 HOH B 9 309 74 HOH HOH . 
H 4 HOH B 10 310 25 HOH HOH . 
H 4 HOH B 11 311 148 HOH HOH . 
H 4 HOH B 12 312 66 HOH HOH . 
H 4 HOH B 13 313 58 HOH HOH . 
H 4 HOH B 14 314 105 HOH HOH . 
H 4 HOH B 15 315 4 HOH HOH . 
H 4 HOH B 16 316 65 HOH HOH . 
H 4 HOH B 17 317 62 HOH HOH . 
H 4 HOH B 18 318 161 HOH HOH . 
H 4 HOH B 19 319 37 HOH HOH . 
H 4 HOH B 20 320 63 HOH HOH . 
H 4 HOH B 21 321 88 HOH HOH . 
H 4 HOH B 22 322 107 HOH HOH . 
H 4 HOH B 23 323 87 HOH HOH . 
H 4 HOH B 24 324 133 HOH HOH . 
H 4 HOH B 25 325 45 HOH HOH . 
H 4 HOH B 26 326 26 HOH HOH . 
H 4 HOH B 27 327 27 HOH HOH . 
H 4 HOH B 28 328 53 HOH HOH . 
H 4 HOH B 29 329 137 HOH HOH . 
H 4 HOH B 30 330 55 HOH HOH . 
H 4 HOH B 31 331 97 HOH HOH . 
H 4 HOH B 32 332 77 HOH HOH . 
H 4 HOH B 33 333 135 HOH HOH . 
H 4 HOH B 34 334 41 HOH HOH . 
H 4 HOH B 35 335 11 HOH HOH . 
H 4 HOH B 36 336 42 HOH HOH . 
H 4 HOH B 37 337 64 HOH HOH . 
H 4 HOH B 38 338 100 HOH HOH . 
H 4 HOH B 39 339 15 HOH HOH . 
H 4 HOH B 40 340 5 HOH HOH . 
H 4 HOH B 41 341 30 HOH HOH . 
H 4 HOH B 42 342 156 HOH HOH . 
H 4 HOH B 43 343 67 HOH HOH . 
H 4 HOH B 44 344 3 HOH HOH . 
H 4 HOH B 45 345 51 HOH HOH . 
H 4 HOH B 46 346 157 HOH HOH . 
H 4 HOH B 47 347 145 HOH HOH . 
H 4 HOH B 48 348 8 HOH HOH . 
H 4 HOH B 49 349 47 HOH HOH . 
H 4 HOH B 50 350 134 HOH HOH . 
H 4 HOH B 51 351 155 HOH HOH . 
H 4 HOH B 52 352 43 HOH HOH . 
H 4 HOH B 53 353 17 HOH HOH . 
H 4 HOH B 54 354 96 HOH HOH . 
H 4 HOH B 55 355 124 HOH HOH . 
H 4 HOH B 56 356 10 HOH HOH . 
H 4 HOH B 57 357 32 HOH HOH . 
H 4 HOH B 58 358 18 HOH HOH . 
H 4 HOH B 59 359 23 HOH HOH . 
H 4 HOH B 60 360 101 HOH HOH . 
H 4 HOH B 61 361 85 HOH HOH . 
H 4 HOH B 62 362 84 HOH HOH . 
H 4 HOH B 63 363 112 HOH HOH . 
H 4 HOH B 64 364 29 HOH HOH . 
H 4 HOH B 65 365 38 HOH HOH . 
H 4 HOH B 66 366 19 HOH HOH . 
H 4 HOH B 67 367 159 HOH HOH . 
H 4 HOH B 68 368 48 HOH HOH . 
H 4 HOH B 69 369 60 HOH HOH . 
H 4 HOH B 70 370 154 HOH HOH . 
H 4 HOH B 71 371 163 HOH HOH . 
H 4 HOH B 72 372 33 HOH HOH . 
H 4 HOH B 73 373 139 HOH HOH . 
H 4 HOH B 74 374 103 HOH HOH . 
H 4 HOH B 75 375 102 HOH HOH . 
H 4 HOH B 76 376 152 HOH HOH . 
H 4 HOH B 77 377 79 HOH HOH . 
H 4 HOH B 78 378 104 HOH HOH . 
H 4 HOH B 79 379 126 HOH HOH . 
H 4 HOH B 80 380 113 HOH HOH . 
H 4 HOH B 81 381 119 HOH HOH . 
H 4 HOH B 82 382 121 HOH HOH . 
H 4 HOH B 83 383 153 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -9.908 
_atom_site.Cartn_y               -39.23 
_atom_site.Cartn_z               20.992 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.76 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           202 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#