data_5VPX # _model_server_result.job_id BkB21Um9Dye_yD2-NvC6SQ _model_server_result.datetime_utc '2024-11-05 00:31:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vpx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5VPX # _exptl.entry_id 5VPX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 487.494 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VPX _cell.length_a 90.672 _cell.length_b 90.672 _cell.length_c 134.165 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VPX _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 A OE1 GLU 120 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc7 B MN MN . A MN 201 1_555 F O17 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 B MN MN . A MN 201 1_555 F O15 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc9 C MN MN . A MN 202 1_555 F O18 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc10 C MN MN . A MN 202 1_555 F O15 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc11 C MN MN . A MN 202 1_555 G O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc12 C MN MN . A MN 202 1_555 G O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? # _chem_comp.formula 'C24 H20 F3 N3 O3 S' _chem_comp.formula_weight 487.494 _chem_comp.id R07 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RO-7 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C41 C43 R07 doub 277 n y C41 C39 R07 sing 278 n y C43 C45 R07 sing 279 n y C39 C36 R07 doub 280 n y C45 C37 R07 doub 281 n y C36 C37 R07 sing 282 n y C36 C33 R07 sing 283 n n C37 C19 R07 sing 284 n n C33 S32 R07 sing 285 n n S32 C31 R07 sing 286 n n C23 C20 R07 sing 287 n n C31 C53 R07 doub 288 n y C31 C30 R07 sing 289 n y C19 C30 R07 sing 290 n n C19 N09 R07 sing 291 n n C53 C51 R07 sing 292 n y C30 C47 R07 doub 293 n y C51 C49 R07 doub 294 n y C47 C49 R07 sing 295 n y C20 N13 R07 sing 296 n n C20 C22 R07 sing 297 n n N09 C10 R07 sing 298 n n N09 N06 R07 sing 299 n n C10 N13 R07 sing 300 n n F27 C22 R07 sing 301 n n N13 C14 R07 sing 302 n n F29 C22 R07 sing 303 n n C22 F28 R07 sing 304 n n C14 O18 R07 doub 305 n n C14 C07 R07 sing 306 n n N06 C07 R07 sing 307 n n N06 C04 R07 sing 308 n n C07 C08 R07 doub 309 n n C04 C02 R07 doub 310 n n C08 O15 R07 sing 311 n n C08 C01 R07 sing 312 n n C02 C01 R07 sing 313 n n C01 O17 R07 doub 314 n n C02 H1 R07 sing 315 n n C04 H2 R07 sing 316 n n C10 H3 R07 sing 317 n n C10 H4 R07 sing 318 n n C19 H5 R07 sing 319 n n C20 H6 R07 sing 320 n n C23 H7 R07 sing 321 n n C23 H8 R07 sing 322 n n C23 H9 R07 sing 323 n n C33 H10 R07 sing 324 n n C33 H11 R07 sing 325 n n C39 H12 R07 sing 326 n n C41 H13 R07 sing 327 n n C43 H14 R07 sing 328 n n C45 H15 R07 sing 329 n n C47 H16 R07 sing 330 n n C49 H17 R07 sing 331 n n C51 H18 R07 sing 332 n n C53 H19 R07 sing 333 n n O15 H20 R07 sing 334 n n # _atom_sites.entry_id 5VPX _atom_sites.fract_transf_matrix[1][1] 0.011029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 2 MN A 1 202 2 MN MN . D 3 SO4 A 1 203 3 SO4 SO4 . E 3 SO4 A 1 204 4 SO4 SO4 . F 4 R07 A 1 205 1 R07 0GK . G 5 HOH A 1 301 4 HOH HOH . G 5 HOH A 2 302 1 HOH HOH . G 5 HOH A 3 303 6 HOH HOH . G 5 HOH A 4 304 2 HOH HOH . G 5 HOH A 5 305 8 HOH HOH . G 5 HOH A 6 306 3 HOH HOH . G 5 HOH A 7 307 5 HOH HOH . G 5 HOH A 8 308 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 R07 . . . F 4 129.99 197.054 420.953 1 62.25 ? C01 R07 205 A 1 HETATM 2 C C02 R07 . . . F 4 129.007 196.1 420.458 1 65.63 ? C02 R07 205 A 1 HETATM 3 C C04 R07 . . . F 4 129.308 195.232 419.276 1 63.67 ? C04 R07 205 A 1 HETATM 4 C C07 R07 . . . F 4 131.606 196.281 419.046 1 61.85 ? C07 R07 205 A 1 HETATM 5 C C08 R07 . . . F 4 131.303 197.172 420.293 1 58.26 ? C08 R07 205 A 1 HETATM 6 C C10 R07 . . . F 4 132.361 194.284 417.359 1 73.58 ? C10 R07 205 A 1 HETATM 7 C C14 R07 . . . F 4 132.965 196.397 418.443 1 66.18 ? C14 R07 205 A 1 HETATM 8 C C19 R07 . . . F 4 130.792 195.419 416.304 1 71.92 ? C19 R07 205 A 1 HETATM 9 C C20 R07 . . . F 4 134.732 195.515 417.08 1 75.8 ? C20 R07 205 A 1 HETATM 10 C C22 R07 . . . F 4 135.668 194.61 417.892 1 79.53 ? C22 R07 205 A 1 HETATM 11 C C23 R07 . . . F 4 134.652 195.011 415.642 1 73.05 ? C23 R07 205 A 1 HETATM 12 C C30 R07 . . . F 4 129.379 196.258 416.5 1 69.29 ? C30 R07 205 A 1 HETATM 13 C C31 R07 . . . F 4 128.13 195.614 416.286 1 68.31 ? C31 R07 205 A 1 HETATM 14 C C33 R07 . . . F 4 129.567 192.931 415.516 1 80.57 ? C33 R07 205 A 1 HETATM 15 C C36 R07 . . . F 4 130.343 193.694 414.425 1 80.43 ? C36 R07 205 A 1 HETATM 16 C C37 R07 . . . F 4 130.937 194.896 414.796 1 75.7 ? C37 R07 205 A 1 HETATM 17 C C39 R07 . . . F 4 130.425 193.21 413.104 1 82.52 ? C39 R07 205 A 1 HETATM 18 C C41 R07 . . . F 4 131.117 193.945 412.145 1 82.75 ? C41 R07 205 A 1 HETATM 19 C C43 R07 . . . F 4 131.718 195.158 412.5 1 74.54 ? C43 R07 205 A 1 HETATM 20 C C45 R07 . . . F 4 131.623 195.631 413.807 1 73.52 ? C45 R07 205 A 1 HETATM 21 C C47 R07 . . . F 4 129.354 197.614 416.904 1 70.82 ? C47 R07 205 A 1 HETATM 22 C C49 R07 . . . F 4 128.169 198.327 417.106 1 67.73 ? C49 R07 205 A 1 HETATM 23 C C51 R07 . . . F 4 126.948 197.691 416.893 1 65.27 ? C51 R07 205 A 1 HETATM 24 C C53 R07 . . . F 4 126.952 196.354 416.483 1 66.49 ? C53 R07 205 A 1 HETATM 25 F F27 R07 . . . F 4 136.943 194.763 417.437 1 82.41 ? F27 R07 205 A 1 HETATM 26 F F28 R07 . . . F 4 135.625 194.92 419.221 1 79.64 ? F28 R07 205 A 1 HETATM 27 F F29 R07 . . . F 4 135.3 193.309 417.75 1 77.77 ? F29 R07 205 A 1 HETATM 28 N N06 R07 . . . F 4 130.661 195.365 418.586 1 67.33 ? N06 R07 205 A 1 HETATM 29 N N09 R07 . . . F 4 131.107 194.633 417.344 1 72.22 ? N09 R07 205 A 1 HETATM 30 N N13 R07 . . . F 4 133.401 195.484 417.665 1 71.88 ? N13 R07 205 A 1 HETATM 31 O O15 R07 . . . F 4 132.29 198.064 420.756 1 61.25 ? O15 R07 205 A 1 HETATM 32 O O17 R07 . . . F 4 129.713 197.702 421.91 1 66.66 ? O17 R07 205 A 1 HETATM 33 O O18 R07 . . . F 4 133.693 197.278 418.743 1 70.71 ? O18 R07 205 A 1 HETATM 34 S S32 R07 . . . F 4 128.042 193.869 415.767 1 76.96 ? S32 R07 205 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #