data_5VPZ # _model_server_result.job_id 4OgqWAay5ZpYCsmb1aM12Q _model_server_result.datetime_utc '2024-11-22 10:51:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vpz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5VPZ # _exptl.entry_id 5VPZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VPZ _cell.length_a 94.937 _cell.length_b 94.937 _cell.length_c 121.016 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VPZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc2 C MG MG . A MG 201 1_555 D O3G GSP . A GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc3 C MG MG . A MG 201 1_555 D O1B GSP . A GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc4 C MG MG . A MG 201 1_555 G O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 C MG MG . A MG 201 1_555 G O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc6 B OG SER 18 B SER 17 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc7 E MG MG . B MG 201 1_555 F O2G GSP . B GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc8 E MG MG . B MG 201 1_555 F O2B GSP . B GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc9 E MG MG . B MG 201 1_555 H O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc10 E MG MG . B MG 201 1_555 H O HOH . B HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VPZ _atom_sites.fract_transf_matrix[1][1] 0.010533 _atom_sites.fract_transf_matrix[1][2] 0.006081 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 201 1 MG MG . D 3 GSP A 1 202 2 GSP GRS . E 2 MG B 1 201 2 MG MG . F 3 GSP B 1 202 1 GSP GRS . G 4 HOH A 1 301 83 HOH HOH . G 4 HOH A 2 302 57 HOH HOH . G 4 HOH A 3 303 88 HOH HOH . G 4 HOH A 4 304 80 HOH HOH . G 4 HOH A 5 305 45 HOH HOH . G 4 HOH A 6 306 52 HOH HOH . G 4 HOH A 7 307 84 HOH HOH . G 4 HOH A 8 308 82 HOH HOH . G 4 HOH A 9 309 117 HOH HOH . G 4 HOH A 10 310 81 HOH HOH . G 4 HOH A 11 311 18 HOH HOH . G 4 HOH A 12 312 85 HOH HOH . G 4 HOH A 13 313 21 HOH HOH . G 4 HOH A 14 314 89 HOH HOH . G 4 HOH A 15 315 16 HOH HOH . G 4 HOH A 16 316 113 HOH HOH . G 4 HOH A 17 317 60 HOH HOH . G 4 HOH A 18 318 25 HOH HOH . G 4 HOH A 19 319 72 HOH HOH . G 4 HOH A 20 320 59 HOH HOH . G 4 HOH A 21 321 114 HOH HOH . G 4 HOH A 22 322 69 HOH HOH . G 4 HOH A 23 323 30 HOH HOH . G 4 HOH A 24 324 116 HOH HOH . G 4 HOH A 25 325 75 HOH HOH . G 4 HOH A 26 326 6 HOH HOH . G 4 HOH A 27 327 37 HOH HOH . G 4 HOH A 28 328 54 HOH HOH . G 4 HOH A 29 329 22 HOH HOH . G 4 HOH A 30 330 35 HOH HOH . G 4 HOH A 31 331 91 HOH HOH . G 4 HOH A 32 332 26 HOH HOH . G 4 HOH A 33 333 9 HOH HOH . G 4 HOH A 34 334 1 HOH HOH . G 4 HOH A 35 335 12 HOH HOH . G 4 HOH A 36 336 124 HOH HOH . G 4 HOH A 37 337 46 HOH HOH . G 4 HOH A 38 338 111 HOH HOH . G 4 HOH A 39 339 23 HOH HOH . G 4 HOH A 40 340 3 HOH HOH . G 4 HOH A 41 341 17 HOH HOH . G 4 HOH A 42 342 50 HOH HOH . G 4 HOH A 43 343 14 HOH HOH . G 4 HOH A 44 344 10 HOH HOH . G 4 HOH A 45 345 71 HOH HOH . G 4 HOH A 46 346 40 HOH HOH . G 4 HOH A 47 347 62 HOH HOH . G 4 HOH A 48 348 34 HOH HOH . G 4 HOH A 49 349 39 HOH HOH . G 4 HOH A 50 350 44 HOH HOH . G 4 HOH A 51 351 92 HOH HOH . G 4 HOH A 52 352 112 HOH HOH . G 4 HOH A 53 353 13 HOH HOH . G 4 HOH A 54 354 97 HOH HOH . G 4 HOH A 55 355 115 HOH HOH . G 4 HOH A 56 356 79 HOH HOH . G 4 HOH A 57 357 28 HOH HOH . G 4 HOH A 58 358 94 HOH HOH . G 4 HOH A 59 359 86 HOH HOH . G 4 HOH A 60 360 95 HOH HOH . H 4 HOH B 1 301 103 HOH HOH . H 4 HOH B 2 302 104 HOH HOH . H 4 HOH B 3 303 47 HOH HOH . H 4 HOH B 4 304 24 HOH HOH . H 4 HOH B 5 305 36 HOH HOH . H 4 HOH B 6 306 102 HOH HOH . H 4 HOH B 7 307 101 HOH HOH . H 4 HOH B 8 308 106 HOH HOH . H 4 HOH B 9 309 43 HOH HOH . H 4 HOH B 10 310 125 HOH HOH . H 4 HOH B 11 311 99 HOH HOH . H 4 HOH B 12 312 78 HOH HOH . H 4 HOH B 13 313 105 HOH HOH . H 4 HOH B 14 314 41 HOH HOH . H 4 HOH B 15 315 58 HOH HOH . H 4 HOH B 16 316 20 HOH HOH . H 4 HOH B 17 317 38 HOH HOH . H 4 HOH B 18 318 49 HOH HOH . H 4 HOH B 19 319 107 HOH HOH . H 4 HOH B 20 320 63 HOH HOH . H 4 HOH B 21 321 29 HOH HOH . H 4 HOH B 22 322 118 HOH HOH . H 4 HOH B 23 323 64 HOH HOH . H 4 HOH B 24 324 90 HOH HOH . H 4 HOH B 25 325 15 HOH HOH . H 4 HOH B 26 326 5 HOH HOH . H 4 HOH B 27 327 32 HOH HOH . H 4 HOH B 28 328 65 HOH HOH . H 4 HOH B 29 329 67 HOH HOH . H 4 HOH B 30 330 55 HOH HOH . H 4 HOH B 31 331 74 HOH HOH . H 4 HOH B 32 332 122 HOH HOH . H 4 HOH B 33 333 119 HOH HOH . H 4 HOH B 34 334 70 HOH HOH . H 4 HOH B 35 335 4 HOH HOH . H 4 HOH B 36 336 109 HOH HOH . H 4 HOH B 37 337 11 HOH HOH . H 4 HOH B 38 338 77 HOH HOH . H 4 HOH B 39 339 123 HOH HOH . H 4 HOH B 40 340 2 HOH HOH . H 4 HOH B 41 341 68 HOH HOH . H 4 HOH B 42 342 7 HOH HOH . H 4 HOH B 43 343 73 HOH HOH . H 4 HOH B 44 344 56 HOH HOH . H 4 HOH B 45 345 61 HOH HOH . H 4 HOH B 46 346 51 HOH HOH . H 4 HOH B 47 347 27 HOH HOH . H 4 HOH B 48 348 33 HOH HOH . H 4 HOH B 49 349 8 HOH HOH . H 4 HOH B 50 350 96 HOH HOH . H 4 HOH B 51 351 120 HOH HOH . H 4 HOH B 52 352 48 HOH HOH . H 4 HOH B 53 353 53 HOH HOH . H 4 HOH B 54 354 108 HOH HOH . H 4 HOH B 55 355 110 HOH HOH . H 4 HOH B 56 356 66 HOH HOH . H 4 HOH B 57 357 19 HOH HOH . H 4 HOH B 58 358 87 HOH HOH . H 4 HOH B 59 359 42 HOH HOH . H 4 HOH B 60 360 100 HOH HOH . H 4 HOH B 61 361 31 HOH HOH . H 4 HOH B 62 362 93 HOH HOH . H 4 HOH B 63 363 121 HOH HOH . H 4 HOH B 64 364 76 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -8.522 _atom_site.Cartn_y -38.431 _atom_site.Cartn_z -21.135 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #