data_5VPZ
#
_model_server_result.job_id            O-5-HD35dXri7G7AmBhjBQ 
_model_server_result.datetime_utc      '2024-11-25 15:05:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vpz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    5VPZ 
#
_exptl.entry_id    5VPZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VPZ 
_cell.length_a            94.937 
_cell.length_b            94.937 
_cell.length_c            121.016 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VPZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc2 C MG MG . A MG 201 1_555 D O3G GSP . A GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc3 C MG MG . A MG 201 1_555 D O1B GSP . A GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc4 C MG MG . A MG 201 1_555 G O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc5 C MG MG . A MG 201 1_555 G O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc6 B OG SER 18 B SER 17 1_555 E MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc7 E MG MG . B MG 201 1_555 F O2G GSP . B GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc8 E MG MG . B MG 201 1_555 F O2B GSP . B GSP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc9 E MG MG . B MG 201 1_555 H O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc10 E MG MG . B MG 201 1_555 H O HOH . B HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VPZ 
_atom_sites.fract_transf_matrix[1][1]    0.010533 
_atom_sites.fract_transf_matrix[1][2]    0.006081 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008263 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 201 1 MG MG . 
D 3 GSP A 1 202 2 GSP GRS . 
E 2 MG B 1 201 2 MG MG . 
F 3 GSP B 1 202 1 GSP GRS . 
G 4 HOH A 1 301 83 HOH HOH . 
G 4 HOH A 2 302 57 HOH HOH . 
G 4 HOH A 3 303 88 HOH HOH . 
G 4 HOH A 4 304 80 HOH HOH . 
G 4 HOH A 5 305 45 HOH HOH . 
G 4 HOH A 6 306 52 HOH HOH . 
G 4 HOH A 7 307 84 HOH HOH . 
G 4 HOH A 8 308 82 HOH HOH . 
G 4 HOH A 9 309 117 HOH HOH . 
G 4 HOH A 10 310 81 HOH HOH . 
G 4 HOH A 11 311 18 HOH HOH . 
G 4 HOH A 12 312 85 HOH HOH . 
G 4 HOH A 13 313 21 HOH HOH . 
G 4 HOH A 14 314 89 HOH HOH . 
G 4 HOH A 15 315 16 HOH HOH . 
G 4 HOH A 16 316 113 HOH HOH . 
G 4 HOH A 17 317 60 HOH HOH . 
G 4 HOH A 18 318 25 HOH HOH . 
G 4 HOH A 19 319 72 HOH HOH . 
G 4 HOH A 20 320 59 HOH HOH . 
G 4 HOH A 21 321 114 HOH HOH . 
G 4 HOH A 22 322 69 HOH HOH . 
G 4 HOH A 23 323 30 HOH HOH . 
G 4 HOH A 24 324 116 HOH HOH . 
G 4 HOH A 25 325 75 HOH HOH . 
G 4 HOH A 26 326 6 HOH HOH . 
G 4 HOH A 27 327 37 HOH HOH . 
G 4 HOH A 28 328 54 HOH HOH . 
G 4 HOH A 29 329 22 HOH HOH . 
G 4 HOH A 30 330 35 HOH HOH . 
G 4 HOH A 31 331 91 HOH HOH . 
G 4 HOH A 32 332 26 HOH HOH . 
G 4 HOH A 33 333 9 HOH HOH . 
G 4 HOH A 34 334 1 HOH HOH . 
G 4 HOH A 35 335 12 HOH HOH . 
G 4 HOH A 36 336 124 HOH HOH . 
G 4 HOH A 37 337 46 HOH HOH . 
G 4 HOH A 38 338 111 HOH HOH . 
G 4 HOH A 39 339 23 HOH HOH . 
G 4 HOH A 40 340 3 HOH HOH . 
G 4 HOH A 41 341 17 HOH HOH . 
G 4 HOH A 42 342 50 HOH HOH . 
G 4 HOH A 43 343 14 HOH HOH . 
G 4 HOH A 44 344 10 HOH HOH . 
G 4 HOH A 45 345 71 HOH HOH . 
G 4 HOH A 46 346 40 HOH HOH . 
G 4 HOH A 47 347 62 HOH HOH . 
G 4 HOH A 48 348 34 HOH HOH . 
G 4 HOH A 49 349 39 HOH HOH . 
G 4 HOH A 50 350 44 HOH HOH . 
G 4 HOH A 51 351 92 HOH HOH . 
G 4 HOH A 52 352 112 HOH HOH . 
G 4 HOH A 53 353 13 HOH HOH . 
G 4 HOH A 54 354 97 HOH HOH . 
G 4 HOH A 55 355 115 HOH HOH . 
G 4 HOH A 56 356 79 HOH HOH . 
G 4 HOH A 57 357 28 HOH HOH . 
G 4 HOH A 58 358 94 HOH HOH . 
G 4 HOH A 59 359 86 HOH HOH . 
G 4 HOH A 60 360 95 HOH HOH . 
H 4 HOH B 1 301 103 HOH HOH . 
H 4 HOH B 2 302 104 HOH HOH . 
H 4 HOH B 3 303 47 HOH HOH . 
H 4 HOH B 4 304 24 HOH HOH . 
H 4 HOH B 5 305 36 HOH HOH . 
H 4 HOH B 6 306 102 HOH HOH . 
H 4 HOH B 7 307 101 HOH HOH . 
H 4 HOH B 8 308 106 HOH HOH . 
H 4 HOH B 9 309 43 HOH HOH . 
H 4 HOH B 10 310 125 HOH HOH . 
H 4 HOH B 11 311 99 HOH HOH . 
H 4 HOH B 12 312 78 HOH HOH . 
H 4 HOH B 13 313 105 HOH HOH . 
H 4 HOH B 14 314 41 HOH HOH . 
H 4 HOH B 15 315 58 HOH HOH . 
H 4 HOH B 16 316 20 HOH HOH . 
H 4 HOH B 17 317 38 HOH HOH . 
H 4 HOH B 18 318 49 HOH HOH . 
H 4 HOH B 19 319 107 HOH HOH . 
H 4 HOH B 20 320 63 HOH HOH . 
H 4 HOH B 21 321 29 HOH HOH . 
H 4 HOH B 22 322 118 HOH HOH . 
H 4 HOH B 23 323 64 HOH HOH . 
H 4 HOH B 24 324 90 HOH HOH . 
H 4 HOH B 25 325 15 HOH HOH . 
H 4 HOH B 26 326 5 HOH HOH . 
H 4 HOH B 27 327 32 HOH HOH . 
H 4 HOH B 28 328 65 HOH HOH . 
H 4 HOH B 29 329 67 HOH HOH . 
H 4 HOH B 30 330 55 HOH HOH . 
H 4 HOH B 31 331 74 HOH HOH . 
H 4 HOH B 32 332 122 HOH HOH . 
H 4 HOH B 33 333 119 HOH HOH . 
H 4 HOH B 34 334 70 HOH HOH . 
H 4 HOH B 35 335 4 HOH HOH . 
H 4 HOH B 36 336 109 HOH HOH . 
H 4 HOH B 37 337 11 HOH HOH . 
H 4 HOH B 38 338 77 HOH HOH . 
H 4 HOH B 39 339 123 HOH HOH . 
H 4 HOH B 40 340 2 HOH HOH . 
H 4 HOH B 41 341 68 HOH HOH . 
H 4 HOH B 42 342 7 HOH HOH . 
H 4 HOH B 43 343 73 HOH HOH . 
H 4 HOH B 44 344 56 HOH HOH . 
H 4 HOH B 45 345 61 HOH HOH . 
H 4 HOH B 46 346 51 HOH HOH . 
H 4 HOH B 47 347 27 HOH HOH . 
H 4 HOH B 48 348 33 HOH HOH . 
H 4 HOH B 49 349 8 HOH HOH . 
H 4 HOH B 50 350 96 HOH HOH . 
H 4 HOH B 51 351 120 HOH HOH . 
H 4 HOH B 52 352 48 HOH HOH . 
H 4 HOH B 53 353 53 HOH HOH . 
H 4 HOH B 54 354 108 HOH HOH . 
H 4 HOH B 55 355 110 HOH HOH . 
H 4 HOH B 56 356 66 HOH HOH . 
H 4 HOH B 57 357 19 HOH HOH . 
H 4 HOH B 58 358 87 HOH HOH . 
H 4 HOH B 59 359 42 HOH HOH . 
H 4 HOH B 60 360 100 HOH HOH . 
H 4 HOH B 61 361 31 HOH HOH . 
H 4 HOH B 62 362 93 HOH HOH . 
H 4 HOH B 63 363 121 HOH HOH . 
H 4 HOH B 64 364 76 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -8.457 
_atom_site.Cartn_y               -16.409 
_atom_site.Cartn_z               21.129 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.15 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#