data_5VQ1 # _model_server_result.job_id S3MVuQhiRzu0pOAR5OhBng _model_server_result.datetime_utc '2024-11-22 10:25:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vq1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5VQ1 # _exptl.entry_id 5VQ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VQ1 _cell.length_a 93.862 _cell.length_b 93.862 _cell.length_c 120.498 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VQ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc2 C O3B GDP . A GDP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc3 D MG MG . A MG 202 1_555 H O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc4 D MG MG . A MG 202 1_555 H O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc5 D MG MG . A MG 202 1_555 H O HOH . A HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 D MG MG . A MG 202 1_555 H O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 B OG SER 18 B SER 17 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc8 E O2B GDP . B GDP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc9 F MG MG . B MG 202 1_555 I O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc10 F MG MG . B MG 202 1_555 I O HOH . B HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc11 F MG MG . B MG 202 1_555 I O HOH . B HOH 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc12 F MG MG . B MG 202 1_555 I O HOH . B HOH 347 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VQ1 _atom_sites.fract_transf_matrix[1][1] 0.010654 _atom_sites.fract_transf_matrix[1][2] 0.006151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012302 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 1 GDP GDP . D 3 MG A 1 202 1 MG MG . E 2 GDP B 1 201 2 GDP GDP . F 3 MG B 1 202 2 MG MG . G 4 PG4 B 1 203 1 PG4 PG4 . H 5 HOH A 1 301 34 HOH HOH . H 5 HOH A 2 302 35 HOH HOH . H 5 HOH A 3 303 77 HOH HOH . H 5 HOH A 4 304 70 HOH HOH . H 5 HOH A 5 305 126 HOH HOH . H 5 HOH A 6 306 124 HOH HOH . H 5 HOH A 7 307 2 HOH HOH . H 5 HOH A 8 308 130 HOH HOH . H 5 HOH A 9 309 84 HOH HOH . H 5 HOH A 10 310 28 HOH HOH . H 5 HOH A 11 311 102 HOH HOH . H 5 HOH A 12 312 1 HOH HOH . H 5 HOH A 13 313 86 HOH HOH . H 5 HOH A 14 314 94 HOH HOH . H 5 HOH A 15 315 107 HOH HOH . H 5 HOH A 16 316 131 HOH HOH . H 5 HOH A 17 317 125 HOH HOH . H 5 HOH A 18 318 57 HOH HOH . H 5 HOH A 19 319 52 HOH HOH . H 5 HOH A 20 320 41 HOH HOH . H 5 HOH A 21 321 49 HOH HOH . H 5 HOH A 22 322 128 HOH HOH . H 5 HOH A 23 323 117 HOH HOH . H 5 HOH A 24 324 3 HOH HOH . H 5 HOH A 25 325 91 HOH HOH . H 5 HOH A 26 326 7 HOH HOH . H 5 HOH A 27 327 87 HOH HOH . H 5 HOH A 28 328 13 HOH HOH . H 5 HOH A 29 329 50 HOH HOH . H 5 HOH A 30 330 123 HOH HOH . H 5 HOH A 31 331 105 HOH HOH . H 5 HOH A 32 332 137 HOH HOH . H 5 HOH A 33 333 25 HOH HOH . H 5 HOH A 34 334 76 HOH HOH . H 5 HOH A 35 335 115 HOH HOH . H 5 HOH A 36 336 121 HOH HOH . H 5 HOH A 37 337 85 HOH HOH . H 5 HOH A 38 338 60 HOH HOH . H 5 HOH A 39 339 11 HOH HOH . H 5 HOH A 40 340 71 HOH HOH . H 5 HOH A 41 341 15 HOH HOH . H 5 HOH A 42 342 62 HOH HOH . H 5 HOH A 43 343 80 HOH HOH . H 5 HOH A 44 344 106 HOH HOH . H 5 HOH A 45 345 78 HOH HOH . H 5 HOH A 46 346 113 HOH HOH . H 5 HOH A 47 347 38 HOH HOH . H 5 HOH A 48 348 24 HOH HOH . H 5 HOH A 49 349 16 HOH HOH . H 5 HOH A 50 350 31 HOH HOH . H 5 HOH A 51 351 21 HOH HOH . H 5 HOH A 52 352 64 HOH HOH . H 5 HOH A 53 353 144 HOH HOH . H 5 HOH A 54 354 42 HOH HOH . H 5 HOH A 55 355 88 HOH HOH . H 5 HOH A 56 356 45 HOH HOH . H 5 HOH A 57 357 145 HOH HOH . H 5 HOH A 58 358 22 HOH HOH . H 5 HOH A 59 359 133 HOH HOH . H 5 HOH A 60 360 116 HOH HOH . H 5 HOH A 61 361 73 HOH HOH . H 5 HOH A 62 362 14 HOH HOH . H 5 HOH A 63 363 104 HOH HOH . H 5 HOH A 64 364 33 HOH HOH . H 5 HOH A 65 365 67 HOH HOH . H 5 HOH A 66 366 51 HOH HOH . H 5 HOH A 67 367 103 HOH HOH . H 5 HOH A 68 368 79 HOH HOH . H 5 HOH A 69 369 54 HOH HOH . H 5 HOH A 70 370 122 HOH HOH . H 5 HOH A 71 371 114 HOH HOH . H 5 HOH A 72 372 17 HOH HOH . H 5 HOH A 73 373 111 HOH HOH . H 5 HOH A 74 374 118 HOH HOH . H 5 HOH A 75 375 132 HOH HOH . H 5 HOH A 76 376 95 HOH HOH . H 5 HOH A 77 377 127 HOH HOH . H 5 HOH A 78 378 109 HOH HOH . H 5 HOH A 79 379 110 HOH HOH . I 5 HOH B 1 301 141 HOH HOH . I 5 HOH B 2 302 46 HOH HOH . I 5 HOH B 3 303 142 HOH HOH . I 5 HOH B 4 304 129 HOH HOH . I 5 HOH B 5 305 82 HOH HOH . I 5 HOH B 6 306 36 HOH HOH . I 5 HOH B 7 307 6 HOH HOH . I 5 HOH B 8 308 97 HOH HOH . I 5 HOH B 9 309 99 HOH HOH . I 5 HOH B 10 310 134 HOH HOH . I 5 HOH B 11 311 138 HOH HOH . I 5 HOH B 12 312 43 HOH HOH . I 5 HOH B 13 313 58 HOH HOH . I 5 HOH B 14 314 47 HOH HOH . I 5 HOH B 15 315 4 HOH HOH . I 5 HOH B 16 316 135 HOH HOH . I 5 HOH B 17 317 40 HOH HOH . I 5 HOH B 18 318 119 HOH HOH . I 5 HOH B 19 319 9 HOH HOH . I 5 HOH B 20 320 8 HOH HOH . I 5 HOH B 21 321 136 HOH HOH . I 5 HOH B 22 322 72 HOH HOH . I 5 HOH B 23 323 10 HOH HOH . I 5 HOH B 24 324 5 HOH HOH . I 5 HOH B 25 325 92 HOH HOH . I 5 HOH B 26 326 100 HOH HOH . I 5 HOH B 27 327 147 HOH HOH . I 5 HOH B 28 328 93 HOH HOH . I 5 HOH B 29 329 61 HOH HOH . I 5 HOH B 30 330 63 HOH HOH . I 5 HOH B 31 331 12 HOH HOH . I 5 HOH B 32 332 55 HOH HOH . I 5 HOH B 33 333 69 HOH HOH . I 5 HOH B 34 334 39 HOH HOH . I 5 HOH B 35 335 89 HOH HOH . I 5 HOH B 36 336 66 HOH HOH . I 5 HOH B 37 337 48 HOH HOH . I 5 HOH B 38 338 32 HOH HOH . I 5 HOH B 39 339 143 HOH HOH . I 5 HOH B 40 340 140 HOH HOH . I 5 HOH B 41 341 26 HOH HOH . I 5 HOH B 42 342 27 HOH HOH . I 5 HOH B 43 343 37 HOH HOH . I 5 HOH B 44 344 83 HOH HOH . I 5 HOH B 45 345 53 HOH HOH . I 5 HOH B 46 346 30 HOH HOH . I 5 HOH B 47 347 23 HOH HOH . I 5 HOH B 48 348 139 HOH HOH . I 5 HOH B 49 349 68 HOH HOH . I 5 HOH B 50 350 59 HOH HOH . I 5 HOH B 51 351 98 HOH HOH . I 5 HOH B 52 352 112 HOH HOH . I 5 HOH B 53 353 29 HOH HOH . I 5 HOH B 54 354 74 HOH HOH . I 5 HOH B 55 355 90 HOH HOH . I 5 HOH B 56 356 44 HOH HOH . I 5 HOH B 57 357 56 HOH HOH . I 5 HOH B 58 358 75 HOH HOH . I 5 HOH B 59 359 65 HOH HOH . I 5 HOH B 60 360 81 HOH HOH . I 5 HOH B 61 361 101 HOH HOH . I 5 HOH B 62 362 148 HOH HOH . I 5 HOH B 63 363 20 HOH HOH . I 5 HOH B 64 364 146 HOH HOH . I 5 HOH B 65 365 120 HOH HOH . I 5 HOH B 66 366 96 HOH HOH . I 5 HOH B 67 367 108 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.042 _atom_site.Cartn_y 11.829 _atom_site.Cartn_z -21.126 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 44 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #