data_5VQ2 # _model_server_result.job_id j_WIo5f8JxpAderaNtNXyQ _model_server_result.datetime_utc '2024-11-22 04:51:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5VQ2 # _exptl.entry_id 5VQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VQ2 _cell.length_a 94.919 _cell.length_b 94.919 _cell.length_c 120.5 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 GLN 26 A GLN 25 1_555 B NE2 GLN 26 B GLN 25 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 C O2G GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 C O2B GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc4 D MG MG . A MG 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? metalc ? metalc5 B OG SER 18 B SER 17 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc6 E O3G GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc7 E O1B GTP . B GTP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc8 F MG MG . B MG 202 1_555 H O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VQ2 _atom_sites.fract_transf_matrix[1][1] 0.010535 _atom_sites.fract_transf_matrix[1][2] 0.006083 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP A 1 201 2 GTP GTP . D 3 MG A 1 202 1 MG MG . E 2 GTP B 1 201 1 GTP GTP . F 3 MG B 1 202 2 MG MG . G 4 HOH A 1 301 106 HOH HOH . G 4 HOH A 2 302 69 HOH HOH . G 4 HOH A 3 303 8 HOH HOH . G 4 HOH A 4 304 28 HOH HOH . G 4 HOH A 5 305 88 HOH HOH . G 4 HOH A 6 306 63 HOH HOH . G 4 HOH A 7 307 7 HOH HOH . G 4 HOH A 8 308 78 HOH HOH . G 4 HOH A 9 309 21 HOH HOH . G 4 HOH A 10 310 86 HOH HOH . G 4 HOH A 11 311 26 HOH HOH . G 4 HOH A 12 312 56 HOH HOH . G 4 HOH A 13 313 108 HOH HOH . G 4 HOH A 14 314 53 HOH HOH . G 4 HOH A 15 315 45 HOH HOH . G 4 HOH A 16 316 80 HOH HOH . G 4 HOH A 17 317 39 HOH HOH . G 4 HOH A 18 318 15 HOH HOH . G 4 HOH A 19 319 25 HOH HOH . G 4 HOH A 20 320 27 HOH HOH . G 4 HOH A 21 321 101 HOH HOH . G 4 HOH A 22 322 66 HOH HOH . G 4 HOH A 23 323 68 HOH HOH . G 4 HOH A 24 324 107 HOH HOH . G 4 HOH A 25 325 4 HOH HOH . G 4 HOH A 26 326 90 HOH HOH . G 4 HOH A 27 327 64 HOH HOH . G 4 HOH A 28 328 12 HOH HOH . G 4 HOH A 29 329 40 HOH HOH . G 4 HOH A 30 330 70 HOH HOH . G 4 HOH A 31 331 57 HOH HOH . G 4 HOH A 32 332 20 HOH HOH . G 4 HOH A 33 333 48 HOH HOH . G 4 HOH A 34 334 36 HOH HOH . G 4 HOH A 35 335 87 HOH HOH . G 4 HOH A 36 336 71 HOH HOH . G 4 HOH A 37 337 79 HOH HOH . G 4 HOH A 38 338 83 HOH HOH . G 4 HOH A 39 339 30 HOH HOH . G 4 HOH A 40 340 59 HOH HOH . G 4 HOH A 41 341 55 HOH HOH . G 4 HOH A 42 342 43 HOH HOH . G 4 HOH A 43 343 13 HOH HOH . G 4 HOH A 44 344 6 HOH HOH . G 4 HOH A 45 345 11 HOH HOH . G 4 HOH A 46 346 14 HOH HOH . G 4 HOH A 47 347 100 HOH HOH . G 4 HOH A 48 348 77 HOH HOH . G 4 HOH A 49 349 72 HOH HOH . G 4 HOH A 50 350 92 HOH HOH . G 4 HOH A 51 351 93 HOH HOH . G 4 HOH A 52 352 34 HOH HOH . G 4 HOH A 53 353 94 HOH HOH . G 4 HOH A 54 354 31 HOH HOH . G 4 HOH A 55 355 99 HOH HOH . H 4 HOH B 1 301 85 HOH HOH . H 4 HOH B 2 302 104 HOH HOH . H 4 HOH B 3 303 16 HOH HOH . H 4 HOH B 4 304 19 HOH HOH . H 4 HOH B 5 305 73 HOH HOH . H 4 HOH B 6 306 17 HOH HOH . H 4 HOH B 7 307 105 HOH HOH . H 4 HOH B 8 308 91 HOH HOH . H 4 HOH B 9 309 49 HOH HOH . H 4 HOH B 10 310 98 HOH HOH . H 4 HOH B 11 311 60 HOH HOH . H 4 HOH B 12 312 44 HOH HOH . H 4 HOH B 13 313 3 HOH HOH . H 4 HOH B 14 314 96 HOH HOH . H 4 HOH B 15 315 67 HOH HOH . H 4 HOH B 16 316 37 HOH HOH . H 4 HOH B 17 317 58 HOH HOH . H 4 HOH B 18 318 54 HOH HOH . H 4 HOH B 19 319 89 HOH HOH . H 4 HOH B 20 320 22 HOH HOH . H 4 HOH B 21 321 5 HOH HOH . H 4 HOH B 22 322 32 HOH HOH . H 4 HOH B 23 323 82 HOH HOH . H 4 HOH B 24 324 46 HOH HOH . H 4 HOH B 25 325 52 HOH HOH . H 4 HOH B 26 326 51 HOH HOH . H 4 HOH B 27 327 1 HOH HOH . H 4 HOH B 28 328 9 HOH HOH . H 4 HOH B 29 329 50 HOH HOH . H 4 HOH B 30 330 10 HOH HOH . H 4 HOH B 31 331 74 HOH HOH . H 4 HOH B 32 332 35 HOH HOH . H 4 HOH B 33 333 41 HOH HOH . H 4 HOH B 34 334 42 HOH HOH . H 4 HOH B 35 335 81 HOH HOH . H 4 HOH B 36 336 29 HOH HOH . H 4 HOH B 37 337 62 HOH HOH . H 4 HOH B 38 338 102 HOH HOH . H 4 HOH B 39 339 47 HOH HOH . H 4 HOH B 40 340 75 HOH HOH . H 4 HOH B 41 341 103 HOH HOH . H 4 HOH B 42 342 2 HOH HOH . H 4 HOH B 43 343 65 HOH HOH . H 4 HOH B 44 344 61 HOH HOH . H 4 HOH B 45 345 23 HOH HOH . H 4 HOH B 46 346 95 HOH HOH . H 4 HOH B 47 347 24 HOH HOH . H 4 HOH B 48 348 18 HOH HOH . H 4 HOH B 49 349 76 HOH HOH . H 4 HOH B 50 350 33 HOH HOH . H 4 HOH B 51 351 84 HOH HOH . H 4 HOH B 52 352 97 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -10.715 _atom_site.Cartn_y -39.806 _atom_site.Cartn_z 20.799 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 55.42 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #