data_5VQ6 # _model_server_result.job_id fLf8rXr26VX0hTh6TXGC4w _model_server_result.datetime_utc '2024-11-01 18:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5VQ6 # _exptl.entry_id 5VQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VQ6 _cell.length_a 95.117 _cell.length_b 95.117 _cell.length_c 121.417 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 C O3G GSP . A GSP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc3 C O1B GSP . A GSP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc4 D MG MG . A MG 202 1_555 G O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 D MG MG . A MG 202 1_555 G O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc6 B OG SER 18 B SER 17 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc7 E O3G GSP . B GSP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 E O2B GSP . B GSP 201 1_555 F MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc9 F MG MG . B MG 202 1_555 H O HOH . B HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 F MG MG . B MG 202 1_555 H O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VQ6 _atom_sites.fract_transf_matrix[1][1] 0.010513 _atom_sites.fract_transf_matrix[1][2] 0.00607 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GSP A 1 201 1 GSP GRS . D 3 MG A 1 202 2 MG MG . E 2 GSP B 1 201 2 GSP GRS . F 3 MG B 1 202 1 MG MG . G 4 HOH A 1 301 24 HOH HOH . G 4 HOH A 2 302 83 HOH HOH . G 4 HOH A 3 303 27 HOH HOH . G 4 HOH A 4 304 26 HOH HOH . G 4 HOH A 5 305 66 HOH HOH . G 4 HOH A 6 306 81 HOH HOH . G 4 HOH A 7 307 63 HOH HOH . G 4 HOH A 8 308 21 HOH HOH . G 4 HOH A 9 309 46 HOH HOH . G 4 HOH A 10 310 71 HOH HOH . G 4 HOH A 11 311 72 HOH HOH . G 4 HOH A 12 312 29 HOH HOH . G 4 HOH A 13 313 30 HOH HOH . G 4 HOH A 14 314 76 HOH HOH . G 4 HOH A 15 315 77 HOH HOH . G 4 HOH A 16 316 25 HOH HOH . G 4 HOH A 17 317 41 HOH HOH . G 4 HOH A 18 318 3 HOH HOH . G 4 HOH A 19 319 12 HOH HOH . G 4 HOH A 20 320 56 HOH HOH . G 4 HOH A 21 321 73 HOH HOH . G 4 HOH A 22 322 70 HOH HOH . G 4 HOH A 23 323 14 HOH HOH . G 4 HOH A 24 324 74 HOH HOH . G 4 HOH A 25 325 7 HOH HOH . G 4 HOH A 26 326 28 HOH HOH . G 4 HOH A 27 327 1 HOH HOH . G 4 HOH A 28 328 67 HOH HOH . G 4 HOH A 29 329 16 HOH HOH . G 4 HOH A 30 330 44 HOH HOH . G 4 HOH A 31 331 43 HOH HOH . G 4 HOH A 32 332 37 HOH HOH . G 4 HOH A 33 333 13 HOH HOH . G 4 HOH A 34 334 69 HOH HOH . G 4 HOH A 35 335 45 HOH HOH . G 4 HOH A 36 336 42 HOH HOH . G 4 HOH A 37 337 82 HOH HOH . G 4 HOH A 38 338 75 HOH HOH . G 4 HOH A 39 339 68 HOH HOH . G 4 HOH A 40 340 80 HOH HOH . G 4 HOH A 41 341 84 HOH HOH . G 4 HOH A 42 342 87 HOH HOH . G 4 HOH A 43 343 47 HOH HOH . G 4 HOH A 44 344 15 HOH HOH . G 4 HOH A 45 345 38 HOH HOH . H 4 HOH B 1 301 32 HOH HOH . H 4 HOH B 2 302 64 HOH HOH . H 4 HOH B 3 303 59 HOH HOH . H 4 HOH B 4 304 35 HOH HOH . H 4 HOH B 5 305 23 HOH HOH . H 4 HOH B 6 306 17 HOH HOH . H 4 HOH B 7 307 85 HOH HOH . H 4 HOH B 8 308 8 HOH HOH . H 4 HOH B 9 309 22 HOH HOH . H 4 HOH B 10 310 11 HOH HOH . H 4 HOH B 11 311 4 HOH HOH . H 4 HOH B 12 312 49 HOH HOH . H 4 HOH B 13 313 51 HOH HOH . H 4 HOH B 14 314 55 HOH HOH . H 4 HOH B 15 315 31 HOH HOH . H 4 HOH B 16 316 34 HOH HOH . H 4 HOH B 17 317 20 HOH HOH . H 4 HOH B 18 318 62 HOH HOH . H 4 HOH B 19 319 10 HOH HOH . H 4 HOH B 20 320 2 HOH HOH . H 4 HOH B 21 321 53 HOH HOH . H 4 HOH B 22 322 6 HOH HOH . H 4 HOH B 23 323 18 HOH HOH . H 4 HOH B 24 324 19 HOH HOH . H 4 HOH B 25 325 52 HOH HOH . H 4 HOH B 26 326 65 HOH HOH . H 4 HOH B 27 327 5 HOH HOH . H 4 HOH B 28 328 33 HOH HOH . H 4 HOH B 29 329 36 HOH HOH . H 4 HOH B 30 330 54 HOH HOH . H 4 HOH B 31 331 78 HOH HOH . H 4 HOH B 32 332 57 HOH HOH . H 4 HOH B 33 333 48 HOH HOH . H 4 HOH B 34 334 60 HOH HOH . H 4 HOH B 35 335 40 HOH HOH . H 4 HOH B 36 336 61 HOH HOH . H 4 HOH B 37 337 79 HOH HOH . H 4 HOH B 38 338 86 HOH HOH . H 4 HOH B 39 339 88 HOH HOH . H 4 HOH B 40 340 50 HOH HOH . H 4 HOH B 41 341 9 HOH HOH . H 4 HOH B 42 342 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -8.792 _atom_site.Cartn_y -16.175 _atom_site.Cartn_z 21.365 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.77 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 202 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #