data_5VQN # _model_server_result.job_id PyULPJII0tDepdxnmlPaig _model_server_result.datetime_utc '2024-11-25 21:57:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":205}' # _entry.id 5VQN # _exptl.entry_id 5VQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 487.494 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VQN _cell.length_a 89.848 _cell.length_b 89.848 _cell.length_c 133.261 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 C MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc5 A OD1 ASP 120 A ASP 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 B MN MN . A MN 201 1_555 F O15 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc8 B MN MN . A MN 201 1_555 F O17 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc9 C MN MN . A MN 202 1_555 F O18 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc10 C MN MN . A MN 202 1_555 F O15 R07 . A R07 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc11 C MN MN . A MN 202 1_555 G O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc12 C MN MN . A MN 202 1_555 G O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C24 H20 F3 N3 O3 S' _chem_comp.formula_weight 487.494 _chem_comp.id R07 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RO-7 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C41 C43 R07 doub 277 n y C41 C39 R07 sing 278 n y C43 C45 R07 sing 279 n y C39 C36 R07 doub 280 n y C45 C37 R07 doub 281 n y C36 C37 R07 sing 282 n y C36 C33 R07 sing 283 n n C37 C19 R07 sing 284 n n C33 S32 R07 sing 285 n n S32 C31 R07 sing 286 n n C23 C20 R07 sing 287 n n C31 C53 R07 doub 288 n y C31 C30 R07 sing 289 n y C19 C30 R07 sing 290 n n C19 N09 R07 sing 291 n n C53 C51 R07 sing 292 n y C30 C47 R07 doub 293 n y C51 C49 R07 doub 294 n y C47 C49 R07 sing 295 n y C20 N13 R07 sing 296 n n C20 C22 R07 sing 297 n n N09 C10 R07 sing 298 n n N09 N06 R07 sing 299 n n C10 N13 R07 sing 300 n n F27 C22 R07 sing 301 n n N13 C14 R07 sing 302 n n F29 C22 R07 sing 303 n n C22 F28 R07 sing 304 n n C14 O18 R07 doub 305 n n C14 C07 R07 sing 306 n n N06 C07 R07 sing 307 n n N06 C04 R07 sing 308 n n C07 C08 R07 doub 309 n n C04 C02 R07 doub 310 n n C08 O15 R07 sing 311 n n C08 C01 R07 sing 312 n n C02 C01 R07 sing 313 n n C01 O17 R07 doub 314 n n C02 H1 R07 sing 315 n n C04 H2 R07 sing 316 n n C10 H3 R07 sing 317 n n C10 H4 R07 sing 318 n n C19 H5 R07 sing 319 n n C20 H6 R07 sing 320 n n C23 H7 R07 sing 321 n n C23 H8 R07 sing 322 n n C23 H9 R07 sing 323 n n C33 H10 R07 sing 324 n n C33 H11 R07 sing 325 n n C39 H12 R07 sing 326 n n C41 H13 R07 sing 327 n n C43 H14 R07 sing 328 n n C45 H15 R07 sing 329 n n C47 H16 R07 sing 330 n n C49 H17 R07 sing 331 n n C51 H18 R07 sing 332 n n C53 H19 R07 sing 333 n n O15 H20 R07 sing 334 n n # _atom_sites.entry_id 5VQN _atom_sites.fract_transf_matrix[1][1] 0.01113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 201 MN MN . C 2 MN A 1 202 202 MN MN . D 3 SO4 A 1 203 203 SO4 SO4 . E 3 SO4 A 1 204 204 SO4 SO4 . F 4 R07 A 1 205 1 R07 0GK . G 5 HOH A 1 301 2 HOH HOH . G 5 HOH A 2 302 20 HOH HOH . G 5 HOH A 3 303 9 HOH HOH . G 5 HOH A 4 304 8 HOH HOH . G 5 HOH A 5 305 16 HOH HOH . G 5 HOH A 6 306 19 HOH HOH . G 5 HOH A 7 307 13 HOH HOH . G 5 HOH A 8 308 22 HOH HOH . G 5 HOH A 9 309 12 HOH HOH . G 5 HOH A 10 310 1 HOH HOH . G 5 HOH A 11 311 28 HOH HOH . G 5 HOH A 12 312 11 HOH HOH . G 5 HOH A 13 313 10 HOH HOH . G 5 HOH A 14 314 3 HOH HOH . G 5 HOH A 15 315 17 HOH HOH . G 5 HOH A 16 316 25 HOH HOH . G 5 HOH A 17 317 24 HOH HOH . G 5 HOH A 18 318 14 HOH HOH . G 5 HOH A 19 319 21 HOH HOH . G 5 HOH A 20 320 27 HOH HOH . G 5 HOH A 21 321 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 R07 . . . F 4 39.154 105.371 284.833 1 59.65 ? C01 R07 205 A 1 HETATM 2 C C02 R07 . . . F 4 38.126 104.459 284.362 1 47.79 ? C02 R07 205 A 1 HETATM 3 C C04 R07 . . . F 4 38.361 103.637 283.126 1 62.2 ? C04 R07 205 A 1 HETATM 4 C C07 R07 . . . F 4 40.638 104.645 282.793 1 53.1 ? C07 R07 205 A 1 HETATM 5 C C08 R07 . . . F 4 40.413 105.482 284.079 1 45.02 ? C08 R07 205 A 1 HETATM 6 C C10 R07 . . . F 4 41.345 102.679 281.124 1 55.54 ? C10 R07 205 A 1 HETATM 7 C C14 R07 . . . F 4 41.973 104.796 282.143 1 55.3 ? C14 R07 205 A 1 HETATM 8 C C19 R07 . . . F 4 39.802 103.899 280.075 1 55.04 ? C19 R07 205 A 1 HETATM 9 C C20 R07 . . . F 4 43.72 103.955 280.762 1 56.76 ? C20 R07 205 A 1 HETATM 10 C C22 R07 . . . F 4 44.608 103.037 281.608 1 64.13 ? C22 R07 205 A 1 HETATM 11 C C23 R07 . . . F 4 43.715 103.483 279.311 1 60.24 ? C23 R07 205 A 1 HETATM 12 C C30 R07 . . . F 4 38.364 104.661 280.348 1 49.17 ? C30 R07 205 A 1 HETATM 13 C C31 R07 . . . F 4 37.129 103.998 280.144 1 57.57 ? C31 R07 205 A 1 HETATM 14 C C33 R07 . . . F 4 38.573 101.372 279.278 1 60.05 ? C33 R07 205 A 1 HETATM 15 C C36 R07 . . . F 4 39.345 102.164 278.211 1 52.79 ? C36 R07 205 A 1 HETATM 16 C C37 R07 . . . F 4 39.916 103.371 278.574 1 56.05 ? C37 R07 205 A 1 HETATM 17 C C39 R07 . . . F 4 39.417 101.69 276.891 1 66.09 ? C39 R07 205 A 1 HETATM 18 C C41 R07 . . . F 4 40.092 102.428 275.932 1 65.65 ? C41 R07 205 A 1 HETATM 19 C C43 R07 . . . F 4 40.688 103.641 276.284 1 56.67 ? C43 R07 205 A 1 HETATM 20 C C45 R07 . . . F 4 40.595 104.108 277.588 1 53.73 ? C45 R07 205 A 1 HETATM 21 C C47 R07 . . . F 4 38.335 105.984 280.835 1 54.82 ? C47 R07 205 A 1 HETATM 22 C C49 R07 . . . F 4 37.152 106.647 281.105 1 55.66 ? C49 R07 205 A 1 HETATM 23 C C51 R07 . . . F 4 35.943 105.997 280.905 1 54.62 ? C51 R07 205 A 1 HETATM 24 C C53 R07 . . . F 4 35.944 104.692 280.429 1 55.49 ? C53 R07 205 A 1 HETATM 25 F F27 R07 . . . F 4 45.887 103.086 281.143 1 72.71 ? F27 R07 205 A 1 HETATM 26 F F28 R07 . . . F 4 44.588 103.393 282.928 1 62.29 ? F28 R07 205 A 1 HETATM 27 F F29 R07 . . . F 4 44.147 101.762 281.525 1 62.82 ? F29 R07 205 A 1 HETATM 28 N N06 R07 . . . F 4 39.667 103.754 282.354 1 58.22 ? N06 R07 205 A 1 HETATM 29 N N09 R07 . . . F 4 40.086 103.067 281.073 1 61.55 ? N09 R07 205 A 1 HETATM 30 N N13 R07 . . . F 4 42.399 103.888 281.353 1 62.53 ? N13 R07 205 A 1 HETATM 31 O O15 R07 . . . F 4 41.436 106.343 284.492 1 54.83 ? O15 R07 205 A 1 HETATM 32 O O17 R07 . . . F 4 38.982 106.008 285.821 1 51.65 ? O17 R07 205 A 1 HETATM 33 O O18 R07 . . . F 4 42.684 105.705 282.408 1 58.73 ? O18 R07 205 A 1 HETATM 34 S S32 R07 . . . F 4 37.045 102.283 279.522 1 62.09 ? S32 R07 205 A 1 HETATM 35 H H1 R07 . . . F 4 37.323 104.382 284.826 1 57.51 ? H1 R07 205 A 1 HETATM 36 H H2 R07 . . . F 4 37.694 103.067 282.818 1 74.8 ? H2 R07 205 A 1 HETATM 37 H H3 R07 . . . F 4 41.438 102.066 281.828 1 66.82 ? H3 R07 205 A 1 HETATM 38 H H4 R07 . . . F 4 41.556 102.249 280.316 1 66.82 ? H4 R07 205 A 1 HETATM 39 H H5 R07 . . . F 4 40.45 104.577 280.135 1 66.21 ? H5 R07 205 A 1 HETATM 40 H H6 R07 . . . F 4 44.042 104.836 280.807 1 68.27 ? H6 R07 205 A 1 HETATM 41 H H7 R07 . . . F 4 43.086 103.98 278.822 1 72.45 ? H7 R07 205 A 1 HETATM 42 H H8 R07 . . . F 4 43.487 102.572 279.279 1 72.45 ? H8 R07 205 A 1 HETATM 43 H H9 R07 . . . F 4 44.568 103.605 278.939 1 72.45 ? H9 R07 205 A 1 HETATM 44 H H10 R07 . . . F 4 38.388 100.505 278.968 1 72.22 ? H10 R07 205 A 1 HETATM 45 H H11 R07 . . . F 4 39.063 101.341 280.078 1 72.22 ? H11 R07 205 A 1 HETATM 46 H H12 R07 . . . F 4 39.019 100.882 276.664 1 79.47 ? H12 R07 205 A 1 HETATM 47 H H13 R07 . . . F 4 40.155 102.113 275.06 1 78.94 ? H13 R07 205 A 1 HETATM 48 H H14 R07 . . . F 4 41.145 104.136 275.645 1 68.17 ? H14 R07 205 A 1 HETATM 49 H H15 R07 . . . F 4 40.996 104.915 277.814 1 64.64 ? H15 R07 205 A 1 HETATM 50 H H16 R07 . . . F 4 39.139 106.424 280.986 1 65.95 ? H16 R07 205 A 1 HETATM 51 H H17 R07 . . . F 4 37.167 107.52 281.423 1 66.95 ? H17 R07 205 A 1 HETATM 52 H H18 R07 . . . F 4 35.141 106.436 281.071 1 65.7 ? H18 R07 205 A 1 HETATM 53 H H19 R07 . . . F 4 35.13 104.268 280.285 1 66.75 ? H19 R07 205 A 1 HETATM 54 H H20 R07 . . . F 4 42.153 105.923 284.533 1 65.95 ? H20 R07 205 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 142 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 54 #