data_5VQQ
#
_model_server_result.job_id            2-wxoT05Ul2e6_r6UAwAAQ 
_model_server_result.datetime_utc      '2025-01-10 12:11:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vqq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    5VQQ 
#
_exptl.entry_id    5VQQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              502.494 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)-2-fluoro-N-methylacetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.27 
_cell.angle_gamma         90 
_cell.entry_id            5VQQ 
_cell.length_a            162.4 
_cell.length_b            73.5 
_cell.length_c            108.26 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VQQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H23 F N4 O5' 
_chem_comp.formula_weight    502.494 
_chem_comp.id                9JP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)-2-fluoro-N-methylacetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C9 9JP doub 1 n n 
C8 C7 9JP sing 2 n n 
C8 N1 9JP sing 3 n n 
C9 N1 9JP sing 4 n n 
C9 N2 9JP sing 5 n n 
C7 O2 9JP sing 6 n n 
N1 C12 9JP sing 7 n n 
N2 C10 9JP sing 8 n n 
C12 C11 9JP doub 9 n n 
O2 C2 9JP sing 10 n n 
C10 C11 9JP sing 11 n n 
C10 O4 9JP doub 12 n n 
C1 C2 9JP doub 13 n y 
C1 C6 9JP sing 14 n y 
C2 C3 9JP sing 15 n y 
C6 C5 9JP doub 16 n y 
C3 O1 9JP sing 17 n n 
C3 C4 9JP doub 18 n y 
O1 C13 9JP sing 19 n n 
C5 C4 9JP sing 20 n y 
C13 C18 9JP doub 21 n y 
C13 C14 9JP sing 22 n y 
C18 C17 9JP sing 23 n y 
C27 N3 9JP sing 24 n n 
C24 C14 9JP sing 25 n n 
C14 C15 9JP doub 26 n y 
C17 N3 9JP sing 27 n n 
C17 C16 9JP doub 28 n y 
N3 C25 9JP sing 29 n n 
C15 C16 9JP sing 30 n y 
C15 C19 9JP sing 31 n y 
C25 O5 9JP doub 32 n n 
C25 C26 9JP sing 33 n n 
C16 C22 9JP sing 34 n y 
C19 C20 9JP doub 35 n y 
C26 F1 9JP sing 36 n n 
C22 C21 9JP doub 37 n y 
C20 C21 9JP sing 38 n y 
C20 C23 9JP sing 39 n n 
C23 N4 9JP trip 40 n n 
C4 H1 9JP sing 41 n n 
C1 H2 9JP sing 42 n n 
C11 H3 9JP sing 43 n n 
C12 H4 9JP sing 44 n n 
C18 H5 9JP sing 45 n n 
C19 H6 9JP sing 46 n n 
C21 H7 9JP sing 47 n n 
C22 H8 9JP sing 48 n n 
C24 H9 9JP sing 49 n n 
C24 H10 9JP sing 50 n n 
C24 H11 9JP sing 51 n n 
C26 H12 9JP sing 52 n n 
C26 H13 9JP sing 53 n n 
C27 H14 9JP sing 54 n n 
C27 H15 9JP sing 55 n n 
C27 H16 9JP sing 56 n n 
C5 H17 9JP sing 57 n n 
C6 H18 9JP sing 58 n n 
C7 H19 9JP sing 59 n n 
C7 H20 9JP sing 60 n n 
C8 H21 9JP sing 61 n n 
C8 H22 9JP sing 62 n n 
N2 H23 9JP sing 63 n n 
#
_atom_sites.entry_id                     5VQQ 
_atom_sites.fract_transf_matrix[1][1]    0.006158 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001005 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013605 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009359 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9JP A 1 601 1 9JP 683 . 
D 4 SO4 A 1 602 1 SO4 SO4 . 
E 5 HOH A 1 701 1 HOH HOH . 
E 5 HOH A 2 702 30 HOH HOH . 
E 5 HOH A 3 703 31 HOH HOH . 
E 5 HOH A 4 704 4 HOH HOH . 
E 5 HOH A 5 705 20 HOH HOH . 
E 5 HOH A 6 706 11 HOH HOH . 
E 5 HOH A 7 707 32 HOH HOH . 
E 5 HOH A 8 708 3 HOH HOH . 
E 5 HOH A 9 709 8 HOH HOH . 
E 5 HOH A 10 710 5 HOH HOH . 
E 5 HOH A 11 711 12 HOH HOH . 
E 5 HOH A 12 712 10 HOH HOH . 
E 5 HOH A 13 713 18 HOH HOH . 
E 5 HOH A 14 714 17 HOH HOH . 
E 5 HOH A 15 715 29 HOH HOH . 
E 5 HOH A 16 716 26 HOH HOH . 
E 5 HOH A 17 717 14 HOH HOH . 
E 5 HOH A 18 718 2 HOH HOH . 
E 5 HOH A 19 719 33 HOH HOH . 
E 5 HOH A 20 720 21 HOH HOH . 
F 5 HOH B 1 501 28 HOH HOH . 
F 5 HOH B 2 502 23 HOH HOH . 
F 5 HOH B 3 503 7 HOH HOH . 
F 5 HOH B 4 504 19 HOH HOH . 
F 5 HOH B 5 505 15 HOH HOH . 
F 5 HOH B 6 506 27 HOH HOH . 
F 5 HOH B 7 507 13 HOH HOH . 
F 5 HOH B 8 508 6 HOH HOH . 
F 5 HOH B 9 509 9 HOH HOH . 
F 5 HOH B 10 510 24 HOH HOH . 
F 5 HOH B 11 511 16 HOH HOH . 
F 5 HOH B 12 512 25 HOH HOH . 
F 5 HOH B 13 513 22 HOH HOH . 
F 5 HOH B 14 514 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 9JP . . . C 3 847.525 -33.309 144.738 1 65.23 ? C4 9JP 601 A 1 
HETATM 2 N N1 9JP . . . C 3 844.953 -35.875 140.117 1 60.02 ? N1 9JP 601 A 1 
HETATM 3 C C1 9JP . . . C 3 848.28 -33.044 142.076 1 62.81 ? C1 9JP 601 A 1 
HETATM 4 C C10 9JP . . . C 3 844.421 -38.262 141.504 1 62.6 ? C10 9JP 601 A 1 
HETATM 5 C C11 9JP . . . C 3 843.655 -37.058 141.754 1 62.2 ? C11 9JP 601 A 1 
HETATM 6 C C12 9JP . . . C 3 843.961 -35.948 141.059 1 63.91 ? C12 9JP 601 A 1 
HETATM 7 C C13 9JP . . . C 3 844.375 -33.242 144.866 1 68.38 ? C13 9JP 601 A 1 
HETATM 8 C C14 9JP . . . C 3 843.703 -34.121 145.71 1 71.23 ? C14 9JP 601 A 1 
HETATM 9 C C15 9JP . . . C 3 842.782 -33.638 146.69 1 66.63 ? C15 9JP 601 A 1 
HETATM 10 C C16 9JP . . . C 3 842.545 -32.232 146.796 1 73.03 ? C16 9JP 601 A 1 
HETATM 11 C C17 9JP . . . C 3 843.241 -31.341 145.914 1 73.07 ? C17 9JP 601 A 1 
HETATM 12 C C18 9JP . . . C 3 844.132 -31.871 144.966 1 70.86 ? C18 9JP 601 A 1 
HETATM 13 C C19 9JP . . . C 3 842.084 -34.514 147.574 1 64.86 ? C19 9JP 601 A 1 
HETATM 14 C C2 9JP . . . C 3 846.957 -33.36 142.395 1 64.91 ? C2 9JP 601 A 1 
HETATM 15 C C20 9JP . . . C 3 841.186 -34.048 148.53 1 71.07 ? C20 9JP 601 A 1 
HETATM 16 C C21 9JP . . . C 3 840.962 -32.682 148.632 1 71.61 ? C21 9JP 601 A 1 
HETATM 17 C C22 9JP . . . C 3 841.62 -31.789 147.783 1 75.39 ? C22 9JP 601 A 1 
HETATM 18 C C23 9JP . . . C 3 840.5 -34.995 149.408 1 74.08 ? C23 9JP 601 A 1 
HETATM 19 C C24 9JP . . . C 3 843.97 -35.619 145.584 1 75.77 ? C24 9JP 601 A 1 
HETATM 20 C C25 9JP . . . C 3 843.829 -29.109 146.744 1 80.43 ? C25 9JP 601 A 1 
HETATM 21 C C26 9JP . . . C 3 844.949 -29.73 147.584 1 72.94 ? C26 9JP 601 A 1 
HETATM 22 C C27 9JP . . . C 3 841.97 -29.387 145.144 1 75.44 ? C27 9JP 601 A 1 
HETATM 23 C C3 9JP . . . C 3 846.563 -33.486 143.731 1 65.59 ? C3 9JP 601 A 1 
HETATM 24 C C5 9JP . . . C 3 848.848 -32.995 144.405 1 64.97 ? C5 9JP 601 A 1 
HETATM 25 C C6 9JP . . . C 3 849.236 -32.861 143.073 1 63.84 ? C6 9JP 601 A 1 
HETATM 26 C C7 9JP . . . C 3 846.436 -33.894 140.039 1 65.19 ? C7 9JP 601 A 1 
HETATM 27 C C8 9JP . . . C 3 845.247 -34.629 139.398 1 64.05 ? C8 9JP 601 A 1 
HETATM 28 C C9 9JP . . . C 3 845.724 -36.988 139.833 1 60.24 ? C9 9JP 601 A 1 
HETATM 29 F F1 9JP . . . C 3 845.622 -28.798 148.26 1 79.01 ? F1 9JP 601 A 1 
HETATM 30 N N2 9JP . . . C 3 845.39 -38.104 140.557 1 60.02 ? N2 9JP 601 A 1 
HETATM 31 N N3 9JP . . . C 3 843.053 -29.931 145.967 1 77.34 ? N3 9JP 601 A 1 
HETATM 32 N N4 9JP . . . C 3 839.959 -35.752 150.103 1 71.93 ? N4 9JP 601 A 1 
HETATM 33 O O1 9JP . . . C 3 845.237 -33.809 143.953 1 73.62 ? O1 9JP 601 A 1 
HETATM 34 O O2 9JP . . . C 3 846.067 -33.518 141.352 1 67.05 ? O2 9JP 601 A 1 
HETATM 35 O O3 9JP . . . C 3 846.641 -37.024 139.01 1 57.21 ? O3 9JP 601 A 1 
HETATM 36 O O4 9JP . . . C 3 844.218 -39.324 142.086 1 68.44 ? O4 9JP 601 A 1 
HETATM 37 O O5 9JP . . . C 3 843.681 -27.878 146.805 1 83.12 ? O5 9JP 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           37 
#