data_5VQT
#
_model_server_result.job_id            uEZAgK7fdF6pGhANAMP0Og 
_model_server_result.datetime_utc      '2025-01-10 12:05:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vqt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    5VQT 
#
_exptl.entry_id    5VQT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              518.948 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-chloro-N-(6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)-N-methylacetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.54 
_cell.angle_gamma         90 
_cell.entry_id            5VQT 
_cell.length_a            162.503 
_cell.length_b            73.471 
_cell.length_c            108.503 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VQT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H23 Cl N4 O5' 
_chem_comp.formula_weight    518.948 
_chem_comp.id                9K7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-chloro-N-(6-cyano-3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}-4-methylnaphthalen-1-yl)-N-methylacetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3 C9 9K7 doub 1 n n 
C8 C7 9K7 sing 2 n n 
C8 N1 9K7 sing 3 n n 
C9 N1 9K7 sing 4 n n 
C9 N2 9K7 sing 5 n n 
C7 O2 9K7 sing 6 n n 
N1 C12 9K7 sing 7 n n 
N2 C10 9K7 sing 8 n n 
C12 C11 9K7 doub 9 n n 
O2 C2 9K7 sing 10 n n 
C10 C11 9K7 sing 11 n n 
C10 O4 9K7 doub 12 n n 
C1 C2 9K7 doub 13 n y 
C1 C6 9K7 sing 14 n y 
C2 C3 9K7 sing 15 n y 
C6 C5 9K7 doub 16 n y 
C3 O1 9K7 sing 17 n n 
C3 C4 9K7 doub 18 n y 
O1 C13 9K7 sing 19 n n 
C5 C4 9K7 sing 20 n y 
C18 C13 9K7 doub 21 n y 
C18 C17 9K7 sing 22 n y 
C13 C14 9K7 sing 23 n y 
C27 N3 9K7 sing 24 n n 
N3 C17 9K7 sing 25 n n 
N3 C25 9K7 sing 26 n n 
C17 C16 9K7 doub 27 n y 
C14 C24 9K7 sing 28 n n 
C14 C15 9K7 doub 29 n y 
O5 C25 9K7 doub 30 n n 
C25 C26 9K7 sing 31 n n 
C16 C15 9K7 sing 32 n y 
C16 C22 9K7 sing 33 n y 
C15 C19 9K7 sing 34 n y 
C26 CL1 9K7 sing 35 n n 
C22 C21 9K7 doub 36 n y 
C19 C20 9K7 doub 37 n y 
C21 C20 9K7 sing 38 n y 
C20 C23 9K7 sing 39 n n 
C23 N4 9K7 trip 40 n n 
C26 H1 9K7 sing 41 n n 
C26 H2 9K7 sing 42 n n 
C27 H3 9K7 sing 43 n n 
C27 H4 9K7 sing 44 n n 
C27 H5 9K7 sing 45 n n 
C24 H6 9K7 sing 46 n n 
C24 H7 9K7 sing 47 n n 
C24 H8 9K7 sing 48 n n 
C22 H9 9K7 sing 49 n n 
C21 H10 9K7 sing 50 n n 
C1 H11 9K7 sing 51 n n 
C7 H12 9K7 sing 52 n n 
C7 H13 9K7 sing 53 n n 
C6 H14 9K7 sing 54 n n 
C5 H15 9K7 sing 55 n n 
C4 H16 9K7 sing 56 n n 
C8 H17 9K7 sing 57 n n 
C8 H18 9K7 sing 58 n n 
C11 H19 9K7 sing 59 n n 
C12 H20 9K7 sing 60 n n 
N2 H21 9K7 sing 61 n n 
C19 H22 9K7 sing 62 n n 
C18 H23 9K7 sing 63 n n 
#
_atom_sites.entry_id                     5VQT 
_atom_sites.fract_transf_matrix[1][1]    0.006154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001034 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009345 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 9K7 A 1 601 1 9K7 686 . 
D 4 SO4 A 1 602 1 SO4 SO4 . 
E 5 HOH A 1 701 2 HOH HOH . 
E 5 HOH A 2 702 20 HOH HOH . 
E 5 HOH A 3 703 22 HOH HOH . 
E 5 HOH A 4 704 8 HOH HOH . 
E 5 HOH A 5 705 26 HOH HOH . 
E 5 HOH A 6 706 23 HOH HOH . 
E 5 HOH A 7 707 16 HOH HOH . 
E 5 HOH A 8 708 14 HOH HOH . 
E 5 HOH A 9 709 5 HOH HOH . 
E 5 HOH A 10 710 13 HOH HOH . 
E 5 HOH A 11 711 21 HOH HOH . 
E 5 HOH A 12 712 18 HOH HOH . 
E 5 HOH A 13 713 3 HOH HOH . 
E 5 HOH A 14 714 11 HOH HOH . 
E 5 HOH A 15 715 24 HOH HOH . 
F 5 HOH B 1 501 12 HOH HOH . 
F 5 HOH B 2 502 4 HOH HOH . 
F 5 HOH B 3 503 7 HOH HOH . 
F 5 HOH B 4 504 17 HOH HOH . 
F 5 HOH B 5 505 1 HOH HOH . 
F 5 HOH B 6 506 6 HOH HOH . 
F 5 HOH B 7 507 15 HOH HOH . 
F 5 HOH B 8 508 19 HOH HOH . 
F 5 HOH B 9 509 9 HOH HOH . 
F 5 HOH B 10 510 25 HOH HOH . 
F 5 HOH B 11 511 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C26 9K7 . . . C 3 844.919 -29.765 146.69 1 91.53 ? C26 9K7 601 A 1 
HETATM 2 C C25 9K7 . . . C 3 843.606 -29.421 145.981 1 90.5 ? C25 9K7 601 A 1 
HETATM 3 C C27 9K7 . . . C 3 841.583 -30.106 144.798 1 80.98 ? C27 9K7 601 A 1 
HETATM 4 N N4 9K7 . . . C 3 840.478 -36.038 150.352 1 82.86 ? N4 9K7 601 A 1 
HETATM 5 C C24 9K7 . . . C 3 844.326 -36.044 145.734 1 78.97 ? C24 9K7 601 A 1 
HETATM 6 C C22 9K7 . . . C 3 841.677 -32.215 147.541 1 86.29 ? C22 9K7 601 A 1 
HETATM 7 C C21 9K7 . . . C 3 841.132 -33.079 148.509 1 84.52 ? C21 9K7 601 A 1 
HETATM 8 N N3 9K7 . . . C 3 842.838 -30.429 145.488 1 86.63 ? N3 9K7 601 A 1 
HETATM 9 C C23 9K7 . . . C 3 840.928 -35.326 149.555 1 85.89 ? C23 9K7 601 A 1 
HETATM 10 C C20 9K7 . . . C 3 841.497 -34.433 148.551 1 80.7 ? C20 9K7 601 A 1 
HETATM 11 C C1 9K7 . . . C 3 848.471 -33.393 142.096 1 64.69 ? C1 9K7 601 A 1 
HETATM 12 C C2 9K7 . . . C 3 847.127 -33.764 142.355 1 66.14 ? C2 9K7 601 A 1 
HETATM 13 C C7 9K7 . . . C 3 846.522 -34.458 140.125 1 61.94 ? C7 9K7 601 A 1 
HETATM 14 C C6 9K7 . . . C 3 849.361 -33.182 143.167 1 64.45 ? C6 9K7 601 A 1 
HETATM 15 C C5 9K7 . . . C 3 848.911 -33.339 144.493 1 65.08 ? C5 9K7 601 A 1 
HETATM 16 C C4 9K7 . . . C 3 847.574 -33.706 144.753 1 68.22 ? C4 9K7 601 A 1 
HETATM 17 C C3 9K7 . . . C 3 846.682 -33.908 143.678 1 66.94 ? C3 9K7 601 A 1 
HETATM 18 C C8 9K7 . . . C 3 845.326 -35.208 139.521 1 63.6 ? C8 9K7 601 A 1 
HETATM 19 C C9 9K7 . . . C 3 845.877 -37.547 139.916 1 62.53 ? C9 9K7 601 A 1 
HETATM 20 C C10 9K7 . . . C 3 844.67 -38.872 141.618 1 63.69 ? C10 9K7 601 A 1 
HETATM 21 C C11 9K7 . . . C 3 843.88 -37.682 141.908 1 65.56 ? C11 9K7 601 A 1 
HETATM 22 C C12 9K7 . . . C 3 844.109 -36.535 141.226 1 65.13 ? C12 9K7 601 A 1 
HETATM 23 C C13 9K7 . . . C 3 844.484 -33.728 144.73 1 72.18 ? C13 9K7 601 A 1 
HETATM 24 O O2 9K7 . . . C 3 846.155 -33.996 141.409 1 64.34 ? O2 9K7 601 A 1 
HETATM 25 O O1 9K7 . . . C 3 845.37 -34.282 143.839 1 67.72 ? O1 9K7 601 A 1 
HETATM 26 N N1 9K7 . . . C 3 845.077 -36.429 140.24 1 62.56 ? N1 9K7 601 A 1 
HETATM 27 C C14 9K7 . . . C 3 843.917 -34.575 145.7 1 75.93 ? C14 9K7 601 A 1 
HETATM 28 N N2 9K7 . . . C 3 845.63 -38.715 140.624 1 62.85 ? N2 9K7 601 A 1 
HETATM 29 C C15 9K7 . . . C 3 842.985 -34.058 146.631 1 77.44 ? C15 9K7 601 A 1 
HETATM 30 C C19 9K7 . . . C 3 842.423 -34.913 147.61 1 79.43 ? C19 9K7 601 A 1 
HETATM 31 O O5 9K7 . . . C 3 843.286 -28.237 145.865 1 93.83 ? O5 9K7 601 A 1 
HETATM 32 C C16 9K7 . . . C 3 842.61 -32.683 146.586 1 81.29 ? C16 9K7 601 A 1 
HETATM 33 C C17 9K7 . . . C 3 843.18 -31.823 145.599 1 83.65 ? C17 9K7 601 A 1 
HETATM 34 C C18 9K7 . . . C 3 844.103 -32.37 144.675 1 77.3 ? C18 9K7 601 A 1 
HETATM 35 O O4 9K7 . . . C 3 844.545 -39.957 142.173 1 68.99 ? O4 9K7 601 A 1 
HETATM 36 O O3 9K7 . . . C 3 846.756 -37.524 139.056 1 63.07 ? O3 9K7 601 A 1 
HETATM 37 CL CL1 9K7 . . . C 3 844.858 -29.779 148.474 1 110 ? CL1 9K7 601 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           37 
#