data_5VRA
#
_model_server_result.job_id            s56FhRtYhpkXXeUEYVK_qw 
_model_server_result.datetime_utc      '2024-11-26 13:11:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2408}' 
#
_entry.id    5VRA 
#
_exptl.entry_id    5VRA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VRA 
_cell.length_a            39.82 
_cell.length_b            178.9 
_cell.length_c            140.19 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 71 1_555 A SG CYS 184 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf2 A SG CYS 99 A CYS 74 1_555 A SG CYS 171 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 102 A CYS 77 1_555 A SG CYS 191 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 380 A CYS 259 1_555 A SG CYS 383 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc1 A OD1 ASP 77 A ASP 52 1_555 C NA NA . A NA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc2 A OG SER 116 A SER 91 1_555 C NA NA . A NA 2402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc3 C NA NA . A NA 2402 1_555 X O HOH . A HOH 2530 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc4 C NA NA . A NA 2402 1_555 X O HOH . A HOH 2561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc5 C NA NA . A NA 2402 1_555 X O HOH . A HOH 2576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 431 n n 
C10 C9 OLC doub 432 n n 
C10 C11 OLC sing 433 n n 
C9 C8 OLC sing 434 n n 
C17 C16 OLC sing 435 z n 
C11 C12 OLC sing 436 n n 
C8 C7 OLC sing 437 n n 
C24 C22 OLC sing 438 n n 
C24 O25 OLC sing 439 n n 
C16 C15 OLC sing 440 n n 
C12 C13 OLC sing 441 n n 
C7 C6 OLC sing 442 n n 
C15 C14 OLC sing 443 n n 
C13 C14 OLC sing 444 n n 
C6 C5 OLC sing 445 n n 
C5 C4 OLC sing 446 n n 
C4 C3 OLC sing 447 n n 
C3 C2 OLC sing 448 n n 
C2 C1 OLC sing 449 n n 
C21 C22 OLC sing 450 n n 
C21 O20 OLC sing 451 n n 
C1 O19 OLC doub 452 n n 
C1 O20 OLC sing 453 n n 
C22 O23 OLC sing 454 n n 
C18 H18 OLC sing 455 n n 
C18 H18A OLC sing 456 n n 
C18 H18B OLC sing 457 n n 
C10 H10 OLC sing 458 n n 
C9 H9 OLC sing 459 n n 
C17 H17 OLC sing 460 n n 
C17 H17A OLC sing 461 n n 
C11 H11 OLC sing 462 n n 
C11 H11A OLC sing 463 n n 
C8 H8 OLC sing 464 n n 
C8 H8A OLC sing 465 n n 
C24 H24 OLC sing 466 n n 
C24 H24A OLC sing 467 n n 
C16 H16 OLC sing 468 n n 
C16 H16A OLC sing 469 n n 
C12 H12 OLC sing 470 n n 
C12 H12A OLC sing 471 n n 
C7 H7 OLC sing 472 n n 
C7 H7A OLC sing 473 n n 
C15 H15 OLC sing 474 n n 
C15 H15A OLC sing 475 n n 
C13 H13 OLC sing 476 n n 
C13 H13A OLC sing 477 n n 
C6 H6 OLC sing 478 n n 
C6 H6A OLC sing 479 n n 
C14 H14 OLC sing 480 n n 
C14 H14A OLC sing 481 n n 
C5 H5 OLC sing 482 n n 
C5 H5A OLC sing 483 n n 
C4 H4 OLC sing 484 n n 
C4 H4A OLC sing 485 n n 
C3 H3 OLC sing 486 n n 
C3 H3A OLC sing 487 n n 
C2 H2 OLC sing 488 n n 
C2 H2A OLC sing 489 n n 
C21 H21 OLC sing 490 n n 
C21 H21A OLC sing 491 n n 
C22 H22 OLC sing 492 n n 
O25 HO25 OLC sing 493 n n 
O23 HO23 OLC sing 494 n n 
#
_atom_sites.entry_id                     5VRA 
_atom_sites.fract_transf_matrix[1][1]    0.025113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00559 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZMA A 1 2401 2401 ZMA ZMA . 
C 3 NA A 1 2402 1 NA NA . 
D 4 CLR A 1 2403 2404 CLR CLR . 
E 4 CLR A 1 2404 2405 CLR CLR . 
F 4 CLR A 1 2405 2406 CLR CLR . 
G 5 OLC A 1 2406 2427 OLC OLC . 
H 5 OLC A 1 2407 2428 OLC OLC . 
I 5 OLC A 1 2408 2429 OLC OLC . 
J 5 OLC A 1 2409 2430 OLC OLC . 
K 5 OLC A 1 2410 2431 OLC OLC . 
L 5 OLC A 1 2411 2432 OLC OLC . 
M 6 OLA A 1 2412 2409 OLA OLA . 
N 6 OLA A 1 2413 2410 OLA OLA . 
O 6 OLA A 1 2414 2411 OLA OLA . 
P 6 OLA A 1 2415 2412 OLA OLA . 
Q 6 OLA A 1 2416 2413 OLA OLA . 
R 6 OLA A 1 2417 2414 OLA OLA . 
S 6 OLA A 1 2418 2415 OLA OLA . 
T 6 OLA A 1 2419 2416 OLA OLA . 
U 6 OLA A 1 2420 2417 OLA OLA . 
V 6 OLA A 1 2421 2418 OLA OLA . 
W 7 OLB A 1 2422 2426 OLB OLB . 
X 8 HOH A 1 2501 90 HOH HOH . 
X 8 HOH A 2 2502 79 HOH HOH . 
X 8 HOH A 3 2503 35 HOH HOH . 
X 8 HOH A 4 2504 69 HOH HOH . 
X 8 HOH A 5 2505 45 HOH HOH . 
X 8 HOH A 6 2506 80 HOH HOH . 
X 8 HOH A 7 2507 93 HOH HOH . 
X 8 HOH A 8 2508 13 HOH HOH . 
X 8 HOH A 9 2509 49 HOH HOH . 
X 8 HOH A 10 2510 18 HOH HOH . 
X 8 HOH A 11 2511 33 HOH HOH . 
X 8 HOH A 12 2512 28 HOH HOH . 
X 8 HOH A 13 2513 52 HOH HOH . 
X 8 HOH A 14 2514 10 HOH HOH . 
X 8 HOH A 15 2515 50 HOH HOH . 
X 8 HOH A 16 2516 12 HOH HOH . 
X 8 HOH A 17 2517 39 HOH HOH . 
X 8 HOH A 18 2518 44 HOH HOH . 
X 8 HOH A 19 2519 1 HOH HOH . 
X 8 HOH A 20 2520 7 HOH HOH . 
X 8 HOH A 21 2521 30 HOH HOH . 
X 8 HOH A 22 2522 15 HOH HOH . 
X 8 HOH A 23 2523 43 HOH HOH . 
X 8 HOH A 24 2524 54 HOH HOH . 
X 8 HOH A 25 2525 11 HOH HOH . 
X 8 HOH A 26 2526 67 HOH HOH . 
X 8 HOH A 27 2527 78 HOH HOH . 
X 8 HOH A 28 2528 14 HOH HOH . 
X 8 HOH A 29 2529 87 HOH HOH . 
X 8 HOH A 30 2530 8 HOH HOH . 
X 8 HOH A 31 2531 19 HOH HOH . 
X 8 HOH A 32 2532 91 HOH HOH . 
X 8 HOH A 33 2533 81 HOH HOH . 
X 8 HOH A 34 2534 73 HOH HOH . 
X 8 HOH A 35 2535 53 HOH HOH . 
X 8 HOH A 36 2536 9 HOH HOH . 
X 8 HOH A 37 2537 89 HOH HOH . 
X 8 HOH A 38 2538 85 HOH HOH . 
X 8 HOH A 39 2539 24 HOH HOH . 
X 8 HOH A 40 2540 40 HOH HOH . 
X 8 HOH A 41 2541 68 HOH HOH . 
X 8 HOH A 42 2542 31 HOH HOH . 
X 8 HOH A 43 2543 26 HOH HOH . 
X 8 HOH A 44 2544 57 HOH HOH . 
X 8 HOH A 45 2545 3 HOH HOH . 
X 8 HOH A 46 2546 2 HOH HOH . 
X 8 HOH A 47 2547 16 HOH HOH . 
X 8 HOH A 48 2548 56 HOH HOH . 
X 8 HOH A 49 2549 27 HOH HOH . 
X 8 HOH A 50 2550 25 HOH HOH . 
X 8 HOH A 51 2551 42 HOH HOH . 
X 8 HOH A 52 2552 20 HOH HOH . 
X 8 HOH A 53 2553 55 HOH HOH . 
X 8 HOH A 54 2554 17 HOH HOH . 
X 8 HOH A 55 2555 71 HOH HOH . 
X 8 HOH A 56 2556 21 HOH HOH . 
X 8 HOH A 57 2557 36 HOH HOH . 
X 8 HOH A 58 2558 66 HOH HOH . 
X 8 HOH A 59 2559 51 HOH HOH . 
X 8 HOH A 60 2560 5 HOH HOH . 
X 8 HOH A 61 2561 22 HOH HOH . 
X 8 HOH A 62 2562 61 HOH HOH . 
X 8 HOH A 63 2563 4 HOH HOH . 
X 8 HOH A 64 2564 48 HOH HOH . 
X 8 HOH A 65 2565 65 HOH HOH . 
X 8 HOH A 66 2566 82 HOH HOH . 
X 8 HOH A 67 2567 46 HOH HOH . 
X 8 HOH A 68 2568 63 HOH HOH . 
X 8 HOH A 69 2569 59 HOH HOH . 
X 8 HOH A 70 2570 92 HOH HOH . 
X 8 HOH A 71 2571 70 HOH HOH . 
X 8 HOH A 72 2572 75 HOH HOH . 
X 8 HOH A 73 2573 88 HOH HOH . 
X 8 HOH A 74 2574 37 HOH HOH . 
X 8 HOH A 75 2575 60 HOH HOH . 
X 8 HOH A 76 2576 23 HOH HOH . 
X 8 HOH A 77 2577 86 HOH HOH . 
X 8 HOH A 78 2578 72 HOH HOH . 
X 8 HOH A 79 2579 6 HOH HOH . 
X 8 HOH A 80 2580 32 HOH HOH . 
X 8 HOH A 81 2581 76 HOH HOH . 
X 8 HOH A 82 2582 64 HOH HOH . 
X 8 HOH A 83 2583 84 HOH HOH . 
X 8 HOH A 84 2584 29 HOH HOH . 
X 8 HOH A 85 2585 41 HOH HOH . 
X 8 HOH A 86 2586 74 HOH HOH . 
X 8 HOH A 87 2587 62 HOH HOH . 
X 8 HOH A 88 2588 34 HOH HOH . 
X 8 HOH A 89 2589 38 HOH HOH . 
X 8 HOH A 90 2590 94 HOH HOH . 
X 8 HOH A 91 2591 77 HOH HOH . 
X 8 HOH A 92 2592 58 HOH HOH . 
X 8 HOH A 93 2593 83 HOH HOH . 
X 8 HOH A 94 2594 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . I 5 -16.402 -6.309 22.773 1 72.06 ? C10 OLC 2408 A 1 
HETATM 2 C C9 OLC . . . I 5 -15.717 -7.381 22.322 1 70.04 ? C9 OLC 2408 A 1 
HETATM 3 C C11 OLC . . . I 5 -15.671 -5.159 23.43 1 73.6 ? C11 OLC 2408 A 1 
HETATM 4 C C8 OLC . . . I 5 -14.212 -7.46 22.465 1 67.1 ? C8 OLC 2408 A 1 
HETATM 5 C C24 OLC . . . I 5 -12.505 -20.684 23.186 1 75.52 ? C24 OLC 2408 A 1 
HETATM 6 C C12 OLC . . . I 5 -16.669 -4.201 24.044 1 74.29 ? C12 OLC 2408 A 1 
HETATM 7 C C7 OLC . . . I 5 -13.73 -8.755 21.85 1 64.19 ? C7 OLC 2408 A 1 
HETATM 8 C C13 OLC . . . I 5 -17.183 -3.25 22.985 1 74.35 ? C13 OLC 2408 A 1 
HETATM 9 C C6 OLC . . . I 5 -13.717 -9.842 22.903 1 62.65 ? C6 OLC 2408 A 1 
HETATM 10 C C14 OLC . . . I 5 -16.621 -1.865 23.224 1 74.11 ? C14 OLC 2408 A 1 
HETATM 11 C C5 OLC . . . I 5 -13.851 -11.187 22.225 1 62.54 ? C5 OLC 2408 A 1 
HETATM 12 C C4 OLC . . . I 5 -13.488 -12.295 23.19 1 64.19 ? C4 OLC 2408 A 1 
HETATM 13 C C3 OLC . . . I 5 -13.601 -13.619 22.469 1 67.26 ? C3 OLC 2408 A 1 
HETATM 14 C C2 OLC . . . I 5 -12.789 -14.677 23.185 1 70.84 ? C2 OLC 2408 A 1 
HETATM 15 C C21 OLC . . . I 5 -12.693 -18.207 23.152 1 75.29 ? C21 OLC 2408 A 1 
HETATM 16 C C1 OLC . . . I 5 -12.904 -15.978 22.419 1 74.09 ? C1 OLC 2408 A 1 
HETATM 17 C C22 OLC . . . I 5 -11.749 -19.382 23.036 1 75.25 ? C22 OLC 2408 A 1 
HETATM 18 O O19 OLC . . . I 5 -13.755 -16.099 21.562 1 75.79 ? O19 OLC 2408 A 1 
HETATM 19 O O25 OLC . . . I 5 -12.343 -21.45 22.013 1 75.94 ? O25 OLC 2408 A 1 
HETATM 20 O O23 OLC . . . I 5 -11.142 -19.346 21.767 1 75.05 ? O23 OLC 2408 A 1 
HETATM 21 O O20 OLC . . . I 5 -12.037 -17.048 22.694 1 74.86 ? O20 OLC 2408 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#