data_5VRG # _model_server_result.job_id 26GMwzPbis0VaLEbquIn9A _model_server_result.datetime_utc '2024-11-30 23:47:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5VRG # _exptl.entry_id 5VRG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 72.149 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VRG _cell.length_a 87.764 _cell.length_b 158.026 _cell.length_c 44.763 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12' _chem_comp.formula_weight 72.149 _chem_comp.id LNK _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LNK sing 194 n n C1 H11 LNK sing 195 n n C1 H12 LNK sing 196 n n C1 H13 LNK sing 197 n n C2 C3 LNK sing 198 n n C2 H21 LNK sing 199 n n C2 H22 LNK sing 200 n n C3 C4 LNK sing 201 n n C3 H31 LNK sing 202 n n C3 H32 LNK sing 203 n n C4 C5 LNK sing 204 n n C4 H41 LNK sing 205 n n C4 H42 LNK sing 206 n n C5 H51 LNK sing 207 n n C5 H52 LNK sing 208 n n C5 H23 LNK sing 209 n n # _atom_sites.entry_id 5VRG _atom_sites.fract_transf_matrix[1][1] 0.011394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006328 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02234 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLC A 1 601 1 OLC OLC . C 3 LNK A 1 602 1 LNK HEX . D 4 PLM A 1 603 1 PLM PLM . E 4 PLM A 1 604 2 PLM PLM . F 4 PLM A 1 605 3 PLM PLM . G 4 PLM A 1 606 4 PLM PLM . H 4 PLM A 1 607 5 PLM PLM . I 5 CL A 1 608 1 CL CL . J 6 HOH A 1 701 90 HOH HOH . J 6 HOH A 2 702 99 HOH HOH . J 6 HOH A 3 703 54 HOH HOH . J 6 HOH A 4 704 141 HOH HOH . J 6 HOH A 5 705 12 HOH HOH . J 6 HOH A 6 706 96 HOH HOH . J 6 HOH A 7 707 103 HOH HOH . J 6 HOH A 8 708 110 HOH HOH . J 6 HOH A 9 709 114 HOH HOH . J 6 HOH A 10 710 49 HOH HOH . J 6 HOH A 11 711 101 HOH HOH . J 6 HOH A 12 712 8 HOH HOH . J 6 HOH A 13 713 36 HOH HOH . J 6 HOH A 14 714 4 HOH HOH . J 6 HOH A 15 715 2 HOH HOH . J 6 HOH A 16 716 16 HOH HOH . J 6 HOH A 17 717 35 HOH HOH . J 6 HOH A 18 718 115 HOH HOH . J 6 HOH A 19 719 80 HOH HOH . J 6 HOH A 20 720 69 HOH HOH . J 6 HOH A 21 721 47 HOH HOH . J 6 HOH A 22 722 70 HOH HOH . J 6 HOH A 23 723 38 HOH HOH . J 6 HOH A 24 724 61 HOH HOH . J 6 HOH A 25 725 31 HOH HOH . J 6 HOH A 26 726 7 HOH HOH . J 6 HOH A 27 727 28 HOH HOH . J 6 HOH A 28 728 10 HOH HOH . J 6 HOH A 29 729 55 HOH HOH . J 6 HOH A 30 730 87 HOH HOH . J 6 HOH A 31 731 144 HOH HOH . J 6 HOH A 32 732 79 HOH HOH . J 6 HOH A 33 733 30 HOH HOH . J 6 HOH A 34 734 3 HOH HOH . J 6 HOH A 35 735 98 HOH HOH . J 6 HOH A 36 736 97 HOH HOH . J 6 HOH A 37 737 27 HOH HOH . J 6 HOH A 38 738 71 HOH HOH . J 6 HOH A 39 739 74 HOH HOH . J 6 HOH A 40 740 95 HOH HOH . J 6 HOH A 41 741 113 HOH HOH . J 6 HOH A 42 742 13 HOH HOH . J 6 HOH A 43 743 57 HOH HOH . J 6 HOH A 44 744 14 HOH HOH . J 6 HOH A 45 745 53 HOH HOH . J 6 HOH A 46 746 11 HOH HOH . J 6 HOH A 47 747 76 HOH HOH . J 6 HOH A 48 748 17 HOH HOH . J 6 HOH A 49 749 124 HOH HOH . J 6 HOH A 50 750 15 HOH HOH . J 6 HOH A 51 751 19 HOH HOH . J 6 HOH A 52 752 6 HOH HOH . J 6 HOH A 53 753 39 HOH HOH . J 6 HOH A 54 754 1 HOH HOH . J 6 HOH A 55 755 37 HOH HOH . J 6 HOH A 56 756 51 HOH HOH . J 6 HOH A 57 757 45 HOH HOH . J 6 HOH A 58 758 5 HOH HOH . J 6 HOH A 59 759 22 HOH HOH . J 6 HOH A 60 760 32 HOH HOH . J 6 HOH A 61 761 23 HOH HOH . J 6 HOH A 62 762 50 HOH HOH . J 6 HOH A 63 763 106 HOH HOH . J 6 HOH A 64 764 59 HOH HOH . J 6 HOH A 65 765 73 HOH HOH . J 6 HOH A 66 766 78 HOH HOH . J 6 HOH A 67 767 46 HOH HOH . J 6 HOH A 68 768 29 HOH HOH . J 6 HOH A 69 769 42 HOH HOH . J 6 HOH A 70 770 66 HOH HOH . J 6 HOH A 71 771 77 HOH HOH . J 6 HOH A 72 772 21 HOH HOH . J 6 HOH A 73 773 85 HOH HOH . J 6 HOH A 74 774 41 HOH HOH . J 6 HOH A 75 775 43 HOH HOH . J 6 HOH A 76 776 93 HOH HOH . J 6 HOH A 77 777 44 HOH HOH . J 6 HOH A 78 778 24 HOH HOH . J 6 HOH A 79 779 25 HOH HOH . J 6 HOH A 80 780 116 HOH HOH . J 6 HOH A 81 781 65 HOH HOH . J 6 HOH A 82 782 64 HOH HOH . J 6 HOH A 83 783 123 HOH HOH . J 6 HOH A 84 784 94 HOH HOH . J 6 HOH A 85 785 119 HOH HOH . J 6 HOH A 86 786 83 HOH HOH . J 6 HOH A 87 787 48 HOH HOH . J 6 HOH A 88 788 52 HOH HOH . J 6 HOH A 89 789 9 HOH HOH . J 6 HOH A 90 790 139 HOH HOH . J 6 HOH A 91 791 105 HOH HOH . J 6 HOH A 92 792 89 HOH HOH . J 6 HOH A 93 793 117 HOH HOH . J 6 HOH A 94 794 75 HOH HOH . J 6 HOH A 95 795 20 HOH HOH . J 6 HOH A 96 796 40 HOH HOH . J 6 HOH A 97 797 26 HOH HOH . J 6 HOH A 98 798 92 HOH HOH . J 6 HOH A 99 799 68 HOH HOH . J 6 HOH A 100 800 147 HOH HOH . J 6 HOH A 101 801 111 HOH HOH . J 6 HOH A 102 802 67 HOH HOH . J 6 HOH A 103 803 33 HOH HOH . J 6 HOH A 104 804 104 HOH HOH . J 6 HOH A 105 805 107 HOH HOH . J 6 HOH A 106 806 102 HOH HOH . J 6 HOH A 107 807 63 HOH HOH . J 6 HOH A 108 808 118 HOH HOH . J 6 HOH A 109 809 131 HOH HOH . J 6 HOH A 110 810 84 HOH HOH . J 6 HOH A 111 811 100 HOH HOH . J 6 HOH A 112 812 126 HOH HOH . J 6 HOH A 113 813 127 HOH HOH . J 6 HOH A 114 814 132 HOH HOH . J 6 HOH A 115 815 138 HOH HOH . J 6 HOH A 116 816 18 HOH HOH . J 6 HOH A 117 817 108 HOH HOH . J 6 HOH A 118 818 81 HOH HOH . J 6 HOH A 119 819 129 HOH HOH . J 6 HOH A 120 820 145 HOH HOH . J 6 HOH A 121 821 121 HOH HOH . J 6 HOH A 122 822 112 HOH HOH . J 6 HOH A 123 823 133 HOH HOH . J 6 HOH A 124 824 109 HOH HOH . J 6 HOH A 125 825 125 HOH HOH . J 6 HOH A 126 826 134 HOH HOH . J 6 HOH A 127 827 72 HOH HOH . J 6 HOH A 128 828 120 HOH HOH . J 6 HOH A 129 829 135 HOH HOH . J 6 HOH A 130 830 91 HOH HOH . J 6 HOH A 131 831 136 HOH HOH . J 6 HOH A 132 832 58 HOH HOH . J 6 HOH A 133 833 86 HOH HOH . J 6 HOH A 134 834 60 HOH HOH . J 6 HOH A 135 835 122 HOH HOH . J 6 HOH A 136 836 34 HOH HOH . J 6 HOH A 137 837 82 HOH HOH . J 6 HOH A 138 838 142 HOH HOH . J 6 HOH A 139 839 140 HOH HOH . J 6 HOH A 140 840 130 HOH HOH . J 6 HOH A 141 841 137 HOH HOH . J 6 HOH A 142 842 146 HOH HOH . J 6 HOH A 143 843 143 HOH HOH . J 6 HOH A 144 844 128 HOH HOH . J 6 HOH A 145 845 62 HOH HOH . J 6 HOH A 146 846 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LNK . . . C 3 -5.213 -26.069 -12.345 1 46.89 ? C1 LNK 602 A 1 HETATM 2 C C2 LNK . . . C 3 -5.703 -25.881 -13.784 1 46.81 ? C2 LNK 602 A 1 HETATM 3 C C3 LNK . . . C 3 -4.52 -25.817 -14.753 1 46.83 ? C3 LNK 602 A 1 HETATM 4 C C4 LNK . . . C 3 -4.775 -26.575 -16.057 1 46.72 ? C4 LNK 602 A 1 HETATM 5 C C5 LNK . . . C 3 -3.935 -27.839 -16.131 1 46.3 ? C5 LNK 602 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #