data_5VRH # _model_server_result.job_id kw-LB3AW-mrO3yYGHwAc1A _model_server_result.datetime_utc '2024-11-28 06:34:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5VRH # _exptl.entry_id 5VRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.73 _cell.angle_gamma 90 _cell.entry_id 5VRH _cell.length_a 52.671 _cell.length_b 72.586 _cell.length_c 75.61 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 383 A GLU 381 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A OD2 ASP 405 A ASP 403 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc3 D MG MG . A MG 603 1_555 J O HOH . A HOH 844 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VRH _atom_sites.fract_transf_matrix[1][1] 0.018986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003941 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OLB A 1 601 3 OLB OLB . C 2 OLB A 1 602 4 OLB OLB . D 3 MG A 1 603 1 MG MG . E 4 PLM A 1 604 1 PLM PLM . F 4 PLM A 1 605 2 PLM PLM . G 5 CL A 1 606 1 CL CL . H 6 OLC A 1 607 1 OLC OLC . I 6 OLC A 1 608 2 OLC OLC . J 7 HOH A 1 701 309 HOH HOH . J 7 HOH A 2 702 163 HOH HOH . J 7 HOH A 3 703 170 HOH HOH . J 7 HOH A 4 704 28 HOH HOH . J 7 HOH A 5 705 217 HOH HOH . J 7 HOH A 6 706 104 HOH HOH . J 7 HOH A 7 707 124 HOH HOH . J 7 HOH A 8 708 116 HOH HOH . J 7 HOH A 9 709 125 HOH HOH . J 7 HOH A 10 710 70 HOH HOH . J 7 HOH A 11 711 2 HOH HOH . J 7 HOH A 12 712 236 HOH HOH . J 7 HOH A 13 713 94 HOH HOH . J 7 HOH A 14 714 52 HOH HOH . J 7 HOH A 15 715 75 HOH HOH . J 7 HOH A 16 716 197 HOH HOH . J 7 HOH A 17 717 310 HOH HOH . J 7 HOH A 18 718 17 HOH HOH . J 7 HOH A 19 719 4 HOH HOH . J 7 HOH A 20 720 5 HOH HOH . J 7 HOH A 21 721 141 HOH HOH . J 7 HOH A 22 722 244 HOH HOH . J 7 HOH A 23 723 101 HOH HOH . J 7 HOH A 24 724 87 HOH HOH . J 7 HOH A 25 725 308 HOH HOH . J 7 HOH A 26 726 37 HOH HOH . J 7 HOH A 27 727 184 HOH HOH . J 7 HOH A 28 728 90 HOH HOH . J 7 HOH A 29 729 48 HOH HOH . J 7 HOH A 30 730 297 HOH HOH . J 7 HOH A 31 731 76 HOH HOH . J 7 HOH A 32 732 106 HOH HOH . J 7 HOH A 33 733 132 HOH HOH . J 7 HOH A 34 734 26 HOH HOH . J 7 HOH A 35 735 35 HOH HOH . J 7 HOH A 36 736 24 HOH HOH . J 7 HOH A 37 737 279 HOH HOH . J 7 HOH A 38 738 62 HOH HOH . J 7 HOH A 39 739 169 HOH HOH . J 7 HOH A 40 740 63 HOH HOH . J 7 HOH A 41 741 15 HOH HOH . J 7 HOH A 42 742 114 HOH HOH . J 7 HOH A 43 743 155 HOH HOH . J 7 HOH A 44 744 54 HOH HOH . J 7 HOH A 45 745 182 HOH HOH . J 7 HOH A 46 746 68 HOH HOH . J 7 HOH A 47 747 158 HOH HOH . J 7 HOH A 48 748 8 HOH HOH . J 7 HOH A 49 749 14 HOH HOH . J 7 HOH A 50 750 27 HOH HOH . J 7 HOH A 51 751 78 HOH HOH . J 7 HOH A 52 752 123 HOH HOH . J 7 HOH A 53 753 67 HOH HOH . J 7 HOH A 54 754 20 HOH HOH . J 7 HOH A 55 755 95 HOH HOH . J 7 HOH A 56 756 23 HOH HOH . J 7 HOH A 57 757 29 HOH HOH . J 7 HOH A 58 758 222 HOH HOH . J 7 HOH A 59 759 92 HOH HOH . J 7 HOH A 60 760 39 HOH HOH . J 7 HOH A 61 761 86 HOH HOH . J 7 HOH A 62 762 12 HOH HOH . J 7 HOH A 63 763 7 HOH HOH . J 7 HOH A 64 764 152 HOH HOH . J 7 HOH A 65 765 9 HOH HOH . J 7 HOH A 66 766 60 HOH HOH . J 7 HOH A 67 767 164 HOH HOH . J 7 HOH A 68 768 118 HOH HOH . J 7 HOH A 69 769 36 HOH HOH . J 7 HOH A 70 770 30 HOH HOH . J 7 HOH A 71 771 137 HOH HOH . J 7 HOH A 72 772 32 HOH HOH . J 7 HOH A 73 773 79 HOH HOH . J 7 HOH A 74 774 192 HOH HOH . J 7 HOH A 75 775 73 HOH HOH . J 7 HOH A 76 776 110 HOH HOH . J 7 HOH A 77 777 181 HOH HOH . J 7 HOH A 78 778 1 HOH HOH . J 7 HOH A 79 779 18 HOH HOH . J 7 HOH A 80 780 171 HOH HOH . J 7 HOH A 81 781 59 HOH HOH . J 7 HOH A 82 782 3 HOH HOH . J 7 HOH A 83 783 211 HOH HOH . J 7 HOH A 84 784 99 HOH HOH . J 7 HOH A 85 785 46 HOH HOH . J 7 HOH A 86 786 6 HOH HOH . J 7 HOH A 87 787 194 HOH HOH . J 7 HOH A 88 788 45 HOH HOH . J 7 HOH A 89 789 55 HOH HOH . J 7 HOH A 90 790 16 HOH HOH . J 7 HOH A 91 791 105 HOH HOH . J 7 HOH A 92 792 13 HOH HOH . J 7 HOH A 93 793 271 HOH HOH . J 7 HOH A 94 794 129 HOH HOH . J 7 HOH A 95 795 64 HOH HOH . J 7 HOH A 96 796 111 HOH HOH . J 7 HOH A 97 797 43 HOH HOH . J 7 HOH A 98 798 10 HOH HOH . J 7 HOH A 99 799 139 HOH HOH . J 7 HOH A 100 800 42 HOH HOH . J 7 HOH A 101 801 38 HOH HOH . J 7 HOH A 102 802 51 HOH HOH . J 7 HOH A 103 803 83 HOH HOH . J 7 HOH A 104 804 121 HOH HOH . J 7 HOH A 105 805 82 HOH HOH . J 7 HOH A 106 806 85 HOH HOH . J 7 HOH A 107 807 65 HOH HOH . J 7 HOH A 108 808 69 HOH HOH . J 7 HOH A 109 809 49 HOH HOH . J 7 HOH A 110 810 22 HOH HOH . J 7 HOH A 111 811 228 HOH HOH . J 7 HOH A 112 812 131 HOH HOH . J 7 HOH A 113 813 25 HOH HOH . J 7 HOH A 114 814 44 HOH HOH . J 7 HOH A 115 815 148 HOH HOH . J 7 HOH A 116 816 102 HOH HOH . J 7 HOH A 117 817 133 HOH HOH . J 7 HOH A 118 818 84 HOH HOH . J 7 HOH A 119 819 98 HOH HOH . J 7 HOH A 120 820 58 HOH HOH . J 7 HOH A 121 821 11 HOH HOH . J 7 HOH A 122 822 57 HOH HOH . J 7 HOH A 123 823 61 HOH HOH . J 7 HOH A 124 824 135 HOH HOH . J 7 HOH A 125 825 97 HOH HOH . J 7 HOH A 126 826 145 HOH HOH . J 7 HOH A 127 827 47 HOH HOH . J 7 HOH A 128 828 177 HOH HOH . J 7 HOH A 129 829 88 HOH HOH . J 7 HOH A 130 830 40 HOH HOH . J 7 HOH A 131 831 108 HOH HOH . J 7 HOH A 132 832 176 HOH HOH . J 7 HOH A 133 833 81 HOH HOH . J 7 HOH A 134 834 221 HOH HOH . J 7 HOH A 135 835 206 HOH HOH . J 7 HOH A 136 836 140 HOH HOH . J 7 HOH A 137 837 96 HOH HOH . J 7 HOH A 138 838 77 HOH HOH . J 7 HOH A 139 839 138 HOH HOH . J 7 HOH A 140 840 231 HOH HOH . J 7 HOH A 141 841 126 HOH HOH . J 7 HOH A 142 842 112 HOH HOH . J 7 HOH A 143 843 247 HOH HOH . J 7 HOH A 144 844 115 HOH HOH . J 7 HOH A 145 845 234 HOH HOH . J 7 HOH A 146 846 160 HOH HOH . J 7 HOH A 147 847 19 HOH HOH . J 7 HOH A 148 848 100 HOH HOH . J 7 HOH A 149 849 119 HOH HOH . J 7 HOH A 150 850 193 HOH HOH . J 7 HOH A 151 851 53 HOH HOH . J 7 HOH A 152 852 128 HOH HOH . J 7 HOH A 153 853 150 HOH HOH . J 7 HOH A 154 854 159 HOH HOH . J 7 HOH A 155 855 202 HOH HOH . J 7 HOH A 156 856 136 HOH HOH . J 7 HOH A 157 857 66 HOH HOH . J 7 HOH A 158 858 117 HOH HOH . J 7 HOH A 159 859 91 HOH HOH . J 7 HOH A 160 860 34 HOH HOH . J 7 HOH A 161 861 50 HOH HOH . J 7 HOH A 162 862 166 HOH HOH . J 7 HOH A 163 863 260 HOH HOH . J 7 HOH A 164 864 122 HOH HOH . J 7 HOH A 165 865 93 HOH HOH . J 7 HOH A 166 866 41 HOH HOH . J 7 HOH A 167 867 31 HOH HOH . J 7 HOH A 168 868 200 HOH HOH . J 7 HOH A 169 869 56 HOH HOH . J 7 HOH A 170 870 109 HOH HOH . J 7 HOH A 171 871 144 HOH HOH . J 7 HOH A 172 872 134 HOH HOH . J 7 HOH A 173 873 262 HOH HOH . J 7 HOH A 174 874 168 HOH HOH . J 7 HOH A 175 875 162 HOH HOH . J 7 HOH A 176 876 174 HOH HOH . J 7 HOH A 177 877 187 HOH HOH . J 7 HOH A 178 878 89 HOH HOH . J 7 HOH A 179 879 253 HOH HOH . J 7 HOH A 180 880 74 HOH HOH . J 7 HOH A 181 881 269 HOH HOH . J 7 HOH A 182 882 281 HOH HOH . J 7 HOH A 183 883 205 HOH HOH . J 7 HOH A 184 884 261 HOH HOH . J 7 HOH A 185 885 278 HOH HOH . J 7 HOH A 186 886 266 HOH HOH . J 7 HOH A 187 887 167 HOH HOH . J 7 HOH A 188 888 156 HOH HOH . J 7 HOH A 189 889 243 HOH HOH . J 7 HOH A 190 890 130 HOH HOH . J 7 HOH A 191 891 216 HOH HOH . J 7 HOH A 192 892 273 HOH HOH . J 7 HOH A 193 893 142 HOH HOH . J 7 HOH A 194 894 258 HOH HOH . J 7 HOH A 195 895 71 HOH HOH . J 7 HOH A 196 896 179 HOH HOH . J 7 HOH A 197 897 214 HOH HOH . J 7 HOH A 198 898 175 HOH HOH . J 7 HOH A 199 899 33 HOH HOH . J 7 HOH A 200 900 190 HOH HOH . J 7 HOH A 201 901 103 HOH HOH . J 7 HOH A 202 902 287 HOH HOH . J 7 HOH A 203 903 232 HOH HOH . J 7 HOH A 204 904 107 HOH HOH . J 7 HOH A 205 905 290 HOH HOH . J 7 HOH A 206 906 199 HOH HOH . J 7 HOH A 207 907 218 HOH HOH . J 7 HOH A 208 908 153 HOH HOH . J 7 HOH A 209 909 291 HOH HOH . J 7 HOH A 210 910 295 HOH HOH . J 7 HOH A 211 911 185 HOH HOH . J 7 HOH A 212 912 72 HOH HOH . J 7 HOH A 213 913 147 HOH HOH . J 7 HOH A 214 914 225 HOH HOH . J 7 HOH A 215 915 254 HOH HOH . J 7 HOH A 216 916 173 HOH HOH . J 7 HOH A 217 917 201 HOH HOH . J 7 HOH A 218 918 203 HOH HOH . J 7 HOH A 219 919 301 HOH HOH . J 7 HOH A 220 920 127 HOH HOH . J 7 HOH A 221 921 180 HOH HOH . J 7 HOH A 222 922 204 HOH HOH . J 7 HOH A 223 923 191 HOH HOH . J 7 HOH A 224 924 280 HOH HOH . J 7 HOH A 225 925 157 HOH HOH . J 7 HOH A 226 926 210 HOH HOH . J 7 HOH A 227 927 188 HOH HOH . J 7 HOH A 228 928 146 HOH HOH . J 7 HOH A 229 929 230 HOH HOH . J 7 HOH A 230 930 149 HOH HOH . J 7 HOH A 231 931 165 HOH HOH . J 7 HOH A 232 932 113 HOH HOH . J 7 HOH A 233 933 189 HOH HOH . J 7 HOH A 234 934 302 HOH HOH . J 7 HOH A 235 935 235 HOH HOH . J 7 HOH A 236 936 294 HOH HOH . J 7 HOH A 237 937 237 HOH HOH . J 7 HOH A 238 938 198 HOH HOH . J 7 HOH A 239 939 272 HOH HOH . J 7 HOH A 240 940 209 HOH HOH . J 7 HOH A 241 941 224 HOH HOH . J 7 HOH A 242 942 248 HOH HOH . J 7 HOH A 243 943 183 HOH HOH . J 7 HOH A 244 944 186 HOH HOH . J 7 HOH A 245 945 282 HOH HOH . J 7 HOH A 246 946 154 HOH HOH . J 7 HOH A 247 947 120 HOH HOH . J 7 HOH A 248 948 307 HOH HOH . J 7 HOH A 249 949 259 HOH HOH . J 7 HOH A 250 950 196 HOH HOH . J 7 HOH A 251 951 306 HOH HOH . J 7 HOH A 252 952 151 HOH HOH . J 7 HOH A 253 953 292 HOH HOH . J 7 HOH A 254 954 229 HOH HOH . J 7 HOH A 255 955 274 HOH HOH . J 7 HOH A 256 956 251 HOH HOH . J 7 HOH A 257 957 226 HOH HOH . J 7 HOH A 258 958 286 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.833 _atom_site.Cartn_y 20.764 _atom_site.Cartn_z -35.614 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #