data_5VRJ # _model_server_result.job_id rpTmzCSIJ47f84lb8LCoRg _model_server_result.datetime_utc '2024-11-15 02:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vrj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 5VRJ # _exptl.entry_id 5VRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 487.494 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VRJ _cell.length_a 90.924 _cell.length_b 90.924 _cell.length_c 133.913 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_685 -x+1,-y+3,z -1 0 0 0 -1 0 0 0 1 90.924 272.772 0 3 'crystal symmetry operation' 3_765 -y+2,x+1,z 0 -1 0 1 0 0 0 0 1 181.848 90.924 0 4 'crystal symmetry operation' 4_475 y-1,-x+2,z 0 1 0 -1 0 0 0 0 1 -90.924 181.848 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 81 A GLU 80 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A OD2 ASP 109 A ASP 108 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 D MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc4 A OE2 GLU 120 A GLU 119 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 A O ILE 121 A ILE 120 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc6 C MG MG . A MG 202 1_555 E O17 R07 . A R07 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc7 C MG MG . A MG 202 1_555 E O15 R07 . A R07 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc8 D MG MG . A MG 203 1_555 E O18 R07 . A R07 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc9 D MG MG . A MG 203 1_555 E O15 R07 . A R07 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc10 D MG MG . A MG 203 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc11 D MG MG . A MG 203 1_555 F O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'C24 H20 F3 N3 O3 S' _chem_comp.formula_weight 487.494 _chem_comp.id R07 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(11S)-6,11-dihydrodibenzo[b,e]thiepin-11-yl]-5-hydroxy-3-[(2R)-1,1,1-trifluoropropan-2-yl]-2,3-dihydro-1H-pyrido[2,1-f][1,2,4]triazine-4,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms RO-7 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C41 C43 R07 doub 277 n y C41 C39 R07 sing 278 n y C43 C45 R07 sing 279 n y C39 C36 R07 doub 280 n y C45 C37 R07 doub 281 n y C36 C37 R07 sing 282 n y C36 C33 R07 sing 283 n n C37 C19 R07 sing 284 n n C33 S32 R07 sing 285 n n S32 C31 R07 sing 286 n n C23 C20 R07 sing 287 n n C31 C53 R07 doub 288 n y C31 C30 R07 sing 289 n y C19 C30 R07 sing 290 n n C19 N09 R07 sing 291 n n C53 C51 R07 sing 292 n y C30 C47 R07 doub 293 n y C51 C49 R07 doub 294 n y C47 C49 R07 sing 295 n y C20 N13 R07 sing 296 n n C20 C22 R07 sing 297 n n N09 C10 R07 sing 298 n n N09 N06 R07 sing 299 n n C10 N13 R07 sing 300 n n F27 C22 R07 sing 301 n n N13 C14 R07 sing 302 n n F29 C22 R07 sing 303 n n C22 F28 R07 sing 304 n n C14 O18 R07 doub 305 n n C14 C07 R07 sing 306 n n N06 C07 R07 sing 307 n n N06 C04 R07 sing 308 n n C07 C08 R07 doub 309 n n C04 C02 R07 doub 310 n n C08 O15 R07 sing 311 n n C08 C01 R07 sing 312 n n C02 C01 R07 sing 313 n n C01 O17 R07 doub 314 n n C02 H1 R07 sing 315 n n C04 H2 R07 sing 316 n n C10 H3 R07 sing 317 n n C10 H4 R07 sing 318 n n C19 H5 R07 sing 319 n n C20 H6 R07 sing 320 n n C23 H7 R07 sing 321 n n C23 H8 R07 sing 322 n n C23 H9 R07 sing 323 n n C33 H10 R07 sing 324 n n C33 H11 R07 sing 325 n n C39 H12 R07 sing 326 n n C41 H13 R07 sing 327 n n C43 H14 R07 sing 328 n n C45 H15 R07 sing 329 n n C47 H16 R07 sing 330 n n C49 H17 R07 sing 331 n n C51 H18 R07 sing 332 n n C53 H19 R07 sing 333 n n O15 H20 R07 sing 334 n n # _atom_sites.entry_id 5VRJ _atom_sites.fract_transf_matrix[1][1] 0.010998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 201 3 SO4 SO4 . C 3 MG A 1 202 1 MG MG . D 3 MG A 1 203 2 MG MG . E 4 R07 A 1 204 1 R07 0GK . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 2 HOH HOH . F 5 HOH A 3 303 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 R07 . . . E 4 39.685 106.826 286.327 1 66.74 ? C01 R07 204 A 1 HETATM 2 C C02 R07 . . . E 4 38.696 105.891 285.816 1 65.43 ? C02 R07 204 A 1 HETATM 3 C C04 R07 . . . E 4 38.994 105.029 284.621 1 62.79 ? C04 R07 204 A 1 HETATM 4 C C07 R07 . . . E 4 41.281 106.064 284.401 1 60.34 ? C07 R07 204 A 1 HETATM 5 C C08 R07 . . . E 4 40.996 106.938 285.651 1 62.34 ? C08 R07 204 A 1 HETATM 6 C C10 R07 . . . E 4 42.052 104.071 282.705 1 70.27 ? C10 R07 204 A 1 HETATM 7 C C14 R07 . . . E 4 42.659 106.182 283.842 1 64.61 ? C14 R07 204 A 1 HETATM 8 C C19 R07 . . . E 4 40.551 105.31 281.671 1 65.45 ? C19 R07 204 A 1 HETATM 9 C C20 R07 . . . E 4 44.469 105.263 282.562 1 72.11 ? C20 R07 204 A 1 HETATM 10 C C22 R07 . . . E 4 45.294 104.246 283.365 1 77.81 ? C22 R07 204 A 1 HETATM 11 C C23 R07 . . . E 4 44.498 104.88 281.084 1 70.26 ? C23 R07 204 A 1 HETATM 12 C C30 R07 . . . E 4 39.158 106.176 281.879 1 63.1 ? C30 R07 204 A 1 HETATM 13 C C31 R07 . . . E 4 37.906 105.567 281.626 1 63.79 ? C31 R07 204 A 1 HETATM 14 C C33 R07 . . . E 4 39.315 102.959 280.56 1 68.01 ? C33 R07 204 A 1 HETATM 15 C C36 R07 . . . E 4 40.155 103.821 279.594 1 67.61 ? C36 R07 204 A 1 HETATM 16 C C37 R07 . . . E 4 40.765 104.952 280.128 1 67.81 ? C37 R07 204 A 1 HETATM 17 C C39 R07 . . . E 4 40.303 103.491 278.232 1 66.52 ? C39 R07 204 A 1 HETATM 18 C C41 R07 . . . E 4 41.068 104.298 277.396 1 66.71 ? C41 R07 204 A 1 HETATM 19 C C43 R07 . . . E 4 41.678 105.444 277.917 1 68.74 ? C43 R07 204 A 1 HETATM 20 C C45 R07 . . . E 4 41.525 105.771 279.263 1 69.8 ? C45 R07 204 A 1 HETATM 21 C C47 R07 . . . E 4 39.15 107.507 282.352 1 66.23 ? C47 R07 204 A 1 HETATM 22 C C49 R07 . . . E 4 37.97 108.213 282.571 1 63.55 ? C49 R07 204 A 1 HETATM 23 C C51 R07 . . . E 4 36.739 107.607 282.313 1 61.42 ? C51 R07 204 A 1 HETATM 24 C C53 R07 . . . E 4 36.726 106.292 281.843 1 61.72 ? C53 R07 204 A 1 HETATM 25 F F27 R07 . . . E 4 46.593 104.295 282.965 1 84.06 ? F27 R07 204 A 1 HETATM 26 F F28 R07 . . . E 4 45.257 104.525 284.696 1 74.43 ? F28 R07 204 A 1 HETATM 27 F F29 R07 . . . E 4 44.825 102.984 283.162 1 78.67 ? F29 R07 204 A 1 HETATM 28 N N06 R07 . . . E 4 40.341 105.146 283.932 1 65.39 ? N06 R07 204 A 1 HETATM 29 N N09 R07 . . . E 4 40.796 104.433 282.67 1 70.52 ? N09 R07 204 A 1 HETATM 30 N N13 R07 . . . E 4 43.11 105.253 283.073 1 67.49 ? N13 R07 204 A 1 HETATM 31 O O15 R07 . . . E 4 41.998 107.823 286.096 1 59 ? O15 R07 204 A 1 HETATM 32 O O17 R07 . . . E 4 39.421 107.486 287.275 1 70.9 ? O17 R07 204 A 1 HETATM 33 O O18 R07 . . . E 4 43.383 107.043 284.214 1 64.27 ? O18 R07 204 A 1 HETATM 34 S S32 R07 . . . E 4 37.82 103.864 281.023 1 69.84 ? S32 R07 204 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 410 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #