data_5VRO # _model_server_result.job_id SrsMDj79km2pyj9kOhvJqw _model_server_result.datetime_utc '2024-10-19 11:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vro # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":603}' # _entry.id 5VRO # _exptl.entry_id 5VRO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VRO _cell.length_a 61.294 _cell.length_b 67.94 _cell.length_c 145.899 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VRO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 73 B ASP 243 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc2 B OD1 ASP 73 B ASP 243 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 B OD2 ASP 73 B ASP 243 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc4 B O GLY 74 B GLY 244 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc5 B OG SER 177 B SER 347 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc6 B OD1 ASP 262 B ASP 432 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc7 B OD2 ASP 322 B ASP 492 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VRO _atom_sites.fract_transf_matrix[1][1] 0.016315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A7S A 1 300 300 A7S A10 . D 4 MG B 1 601 100 MG MG . E 4 MG B 1 602 101 MG MG . F 4 MG B 1 603 102 MG MG . G 5 HOH A 1 401 112 HOH HOH . G 5 HOH A 2 402 139 HOH HOH . G 5 HOH A 3 403 1 HOH HOH . G 5 HOH A 4 404 133 HOH HOH . G 5 HOH A 5 405 50 HOH HOH . G 5 HOH A 6 406 153 HOH HOH . G 5 HOH A 7 407 43 HOH HOH . G 5 HOH A 8 408 124 HOH HOH . G 5 HOH A 9 409 136 HOH HOH . G 5 HOH A 10 410 8 HOH HOH . G 5 HOH A 11 411 4 HOH HOH . G 5 HOH A 12 412 14 HOH HOH . G 5 HOH A 13 413 18 HOH HOH . G 5 HOH A 14 414 25 HOH HOH . G 5 HOH A 15 415 6 HOH HOH . G 5 HOH A 16 416 37 HOH HOH . G 5 HOH A 17 417 152 HOH HOH . G 5 HOH A 18 418 87 HOH HOH . G 5 HOH A 19 419 21 HOH HOH . G 5 HOH A 20 420 151 HOH HOH . G 5 HOH A 21 421 161 HOH HOH . G 5 HOH A 22 422 51 HOH HOH . G 5 HOH A 23 423 46 HOH HOH . G 5 HOH A 24 424 58 HOH HOH . G 5 HOH A 25 425 47 HOH HOH . G 5 HOH A 26 426 117 HOH HOH . G 5 HOH A 27 427 57 HOH HOH . G 5 HOH A 28 428 64 HOH HOH . G 5 HOH A 29 429 79 HOH HOH . G 5 HOH A 30 430 32 HOH HOH . G 5 HOH A 31 431 23 HOH HOH . G 5 HOH A 32 432 53 HOH HOH . G 5 HOH A 33 433 126 HOH HOH . G 5 HOH A 34 434 74 HOH HOH . G 5 HOH A 35 435 35 HOH HOH . G 5 HOH A 36 436 108 HOH HOH . G 5 HOH A 37 437 30 HOH HOH . G 5 HOH A 38 438 143 HOH HOH . G 5 HOH A 39 439 129 HOH HOH . G 5 HOH A 40 440 88 HOH HOH . G 5 HOH A 41 441 120 HOH HOH . G 5 HOH A 42 442 49 HOH HOH . G 5 HOH A 43 443 147 HOH HOH . G 5 HOH A 44 444 22 HOH HOH . G 5 HOH A 45 445 113 HOH HOH . G 5 HOH A 46 446 90 HOH HOH . G 5 HOH A 47 447 54 HOH HOH . G 5 HOH A 48 448 76 HOH HOH . G 5 HOH A 49 449 155 HOH HOH . G 5 HOH A 50 450 67 HOH HOH . G 5 HOH A 51 451 144 HOH HOH . G 5 HOH A 52 452 85 HOH HOH . G 5 HOH A 53 453 89 HOH HOH . G 5 HOH A 54 454 119 HOH HOH . G 5 HOH A 55 455 41 HOH HOH . G 5 HOH A 56 456 131 HOH HOH . G 5 HOH A 57 457 135 HOH HOH . G 5 HOH A 58 458 96 HOH HOH . H 5 HOH B 1 701 110 HOH HOH . H 5 HOH B 2 702 102 HOH HOH . H 5 HOH B 3 703 3 HOH HOH . H 5 HOH B 4 704 95 HOH HOH . H 5 HOH B 5 705 45 HOH HOH . H 5 HOH B 6 706 77 HOH HOH . H 5 HOH B 7 707 63 HOH HOH . H 5 HOH B 8 708 100 HOH HOH . H 5 HOH B 9 709 7 HOH HOH . H 5 HOH B 10 710 66 HOH HOH . H 5 HOH B 11 711 10 HOH HOH . H 5 HOH B 12 712 56 HOH HOH . H 5 HOH B 13 713 38 HOH HOH . H 5 HOH B 14 714 11 HOH HOH . H 5 HOH B 15 715 114 HOH HOH . H 5 HOH B 16 716 75 HOH HOH . H 5 HOH B 17 717 84 HOH HOH . H 5 HOH B 18 718 62 HOH HOH . H 5 HOH B 19 719 39 HOH HOH . H 5 HOH B 20 720 121 HOH HOH . H 5 HOH B 21 721 48 HOH HOH . H 5 HOH B 22 722 101 HOH HOH . H 5 HOH B 23 723 16 HOH HOH . H 5 HOH B 24 724 158 HOH HOH . H 5 HOH B 25 725 91 HOH HOH . H 5 HOH B 26 726 12 HOH HOH . H 5 HOH B 27 727 9 HOH HOH . H 5 HOH B 28 728 111 HOH HOH . H 5 HOH B 29 729 42 HOH HOH . H 5 HOH B 30 730 103 HOH HOH . H 5 HOH B 31 731 69 HOH HOH . H 5 HOH B 32 732 93 HOH HOH . H 5 HOH B 33 733 27 HOH HOH . H 5 HOH B 34 734 72 HOH HOH . H 5 HOH B 35 735 24 HOH HOH . H 5 HOH B 36 736 122 HOH HOH . H 5 HOH B 37 737 2 HOH HOH . H 5 HOH B 38 738 138 HOH HOH . H 5 HOH B 39 739 127 HOH HOH . H 5 HOH B 40 740 80 HOH HOH . H 5 HOH B 41 741 40 HOH HOH . H 5 HOH B 42 742 68 HOH HOH . H 5 HOH B 43 743 123 HOH HOH . H 5 HOH B 44 744 137 HOH HOH . H 5 HOH B 45 745 13 HOH HOH . H 5 HOH B 46 746 5 HOH HOH . H 5 HOH B 47 747 52 HOH HOH . H 5 HOH B 48 748 70 HOH HOH . H 5 HOH B 49 749 36 HOH HOH . H 5 HOH B 50 750 29 HOH HOH . H 5 HOH B 51 751 92 HOH HOH . H 5 HOH B 52 752 105 HOH HOH . H 5 HOH B 53 753 116 HOH HOH . H 5 HOH B 54 754 34 HOH HOH . H 5 HOH B 55 755 20 HOH HOH . H 5 HOH B 56 756 17 HOH HOH . H 5 HOH B 57 757 33 HOH HOH . H 5 HOH B 58 758 109 HOH HOH . H 5 HOH B 59 759 55 HOH HOH . H 5 HOH B 60 760 19 HOH HOH . H 5 HOH B 61 761 59 HOH HOH . H 5 HOH B 62 762 26 HOH HOH . H 5 HOH B 63 763 156 HOH HOH . H 5 HOH B 64 764 99 HOH HOH . H 5 HOH B 65 765 83 HOH HOH . H 5 HOH B 66 766 132 HOH HOH . H 5 HOH B 67 767 163 HOH HOH . H 5 HOH B 68 768 106 HOH HOH . H 5 HOH B 69 769 31 HOH HOH . H 5 HOH B 70 770 28 HOH HOH . H 5 HOH B 71 771 44 HOH HOH . H 5 HOH B 72 772 94 HOH HOH . H 5 HOH B 73 773 141 HOH HOH . H 5 HOH B 74 774 78 HOH HOH . H 5 HOH B 75 775 97 HOH HOH . H 5 HOH B 76 776 128 HOH HOH . H 5 HOH B 77 777 130 HOH HOH . H 5 HOH B 78 778 86 HOH HOH . H 5 HOH B 79 779 107 HOH HOH . H 5 HOH B 80 780 146 HOH HOH . H 5 HOH B 81 781 149 HOH HOH . H 5 HOH B 82 782 159 HOH HOH . H 5 HOH B 83 783 60 HOH HOH . H 5 HOH B 84 784 148 HOH HOH . H 5 HOH B 85 785 145 HOH HOH . H 5 HOH B 86 786 125 HOH HOH . H 5 HOH B 87 787 150 HOH HOH . H 5 HOH B 88 788 61 HOH HOH . H 5 HOH B 89 789 98 HOH HOH . H 5 HOH B 90 790 15 HOH HOH . H 5 HOH B 91 791 73 HOH HOH . H 5 HOH B 92 792 65 HOH HOH . H 5 HOH B 93 793 82 HOH HOH . H 5 HOH B 94 794 157 HOH HOH . H 5 HOH B 95 795 118 HOH HOH . H 5 HOH B 96 796 142 HOH HOH . H 5 HOH B 97 797 81 HOH HOH . H 5 HOH B 98 798 160 HOH HOH . H 5 HOH B 99 799 115 HOH HOH . H 5 HOH B 100 800 140 HOH HOH . H 5 HOH B 101 801 104 HOH HOH . H 5 HOH B 102 802 71 HOH HOH . H 5 HOH B 103 803 134 HOH HOH . H 5 HOH B 104 804 154 HOH HOH . H 5 HOH B 105 805 162 HOH HOH . H 5 HOH B 106 806 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -17.398 _atom_site.Cartn_y -21.557 _atom_site.Cartn_z 33.213 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #