data_5VSQ # _model_server_result.job_id Iw7L1NCqoYlhhhIKPZYi5g _model_server_result.datetime_utc '2024-10-19 15:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 5VSQ # _exptl.entry_id 5VSQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VSQ _cell.length_a 61.05 _cell.length_b 67.44 _cell.length_c 145.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD2 ASP 73 B ASP 243 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 B OD1 ASP 73 B ASP 243 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 B OD2 ASP 73 B ASP 243 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc4 B O GLY 74 B GLY 244 1_555 E MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc5 B OG SER 177 B SER 347 1_555 D MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc6 B OD1 ASP 262 B ASP 432 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc7 B OD2 ASP 322 B ASP 492 1_555 F MG MG . B MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc8 E MG MG . B MG 602 1_555 H O HOH . B HOH 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc9 F MG MG . B MG 603 1_555 H O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VSQ _atom_sites.fract_transf_matrix[1][1] 0.01638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A2V A 1 300 300 A2V A2V . D 4 MG B 1 601 100 MG MG . E 4 MG B 1 602 101 MG MG . F 4 MG B 1 603 102 MG MG . G 5 HOH A 1 401 52 HOH HOH . G 5 HOH A 2 402 9 HOH HOH . G 5 HOH A 3 403 78 HOH HOH . G 5 HOH A 4 404 58 HOH HOH . G 5 HOH A 5 405 41 HOH HOH . G 5 HOH A 6 406 3 HOH HOH . G 5 HOH A 7 407 46 HOH HOH . G 5 HOH A 8 408 83 HOH HOH . G 5 HOH A 9 409 2 HOH HOH . G 5 HOH A 10 410 70 HOH HOH . G 5 HOH A 11 411 7 HOH HOH . G 5 HOH A 12 412 27 HOH HOH . G 5 HOH A 13 413 57 HOH HOH . G 5 HOH A 14 414 33 HOH HOH . G 5 HOH A 15 415 11 HOH HOH . G 5 HOH A 16 416 73 HOH HOH . G 5 HOH A 17 417 38 HOH HOH . G 5 HOH A 18 418 14 HOH HOH . G 5 HOH A 19 419 30 HOH HOH . G 5 HOH A 20 420 72 HOH HOH . G 5 HOH A 21 421 74 HOH HOH . G 5 HOH A 22 422 79 HOH HOH . G 5 HOH A 23 423 28 HOH HOH . G 5 HOH A 24 424 8 HOH HOH . G 5 HOH A 25 425 10 HOH HOH . G 5 HOH A 26 426 42 HOH HOH . G 5 HOH A 27 427 84 HOH HOH . G 5 HOH A 28 428 39 HOH HOH . H 5 HOH B 1 701 77 HOH HOH . H 5 HOH B 2 702 47 HOH HOH . H 5 HOH B 3 703 50 HOH HOH . H 5 HOH B 4 704 16 HOH HOH . H 5 HOH B 5 705 20 HOH HOH . H 5 HOH B 6 706 1 HOH HOH . H 5 HOH B 7 707 12 HOH HOH . H 5 HOH B 8 708 18 HOH HOH . H 5 HOH B 9 709 56 HOH HOH . H 5 HOH B 10 710 67 HOH HOH . H 5 HOH B 11 711 55 HOH HOH . H 5 HOH B 12 712 4 HOH HOH . H 5 HOH B 13 713 21 HOH HOH . H 5 HOH B 14 714 45 HOH HOH . H 5 HOH B 15 715 13 HOH HOH . H 5 HOH B 16 716 68 HOH HOH . H 5 HOH B 17 717 5 HOH HOH . H 5 HOH B 18 718 37 HOH HOH . H 5 HOH B 19 719 81 HOH HOH . H 5 HOH B 20 720 49 HOH HOH . H 5 HOH B 21 721 36 HOH HOH . H 5 HOH B 22 722 69 HOH HOH . H 5 HOH B 23 723 6 HOH HOH . H 5 HOH B 24 724 26 HOH HOH . H 5 HOH B 25 725 15 HOH HOH . H 5 HOH B 26 726 24 HOH HOH . H 5 HOH B 27 727 60 HOH HOH . H 5 HOH B 28 728 62 HOH HOH . H 5 HOH B 29 729 48 HOH HOH . H 5 HOH B 30 730 29 HOH HOH . H 5 HOH B 31 731 23 HOH HOH . H 5 HOH B 32 732 65 HOH HOH . H 5 HOH B 33 733 51 HOH HOH . H 5 HOH B 34 734 19 HOH HOH . H 5 HOH B 35 735 43 HOH HOH . H 5 HOH B 36 736 75 HOH HOH . H 5 HOH B 37 737 31 HOH HOH . H 5 HOH B 38 738 22 HOH HOH . H 5 HOH B 39 739 82 HOH HOH . H 5 HOH B 40 740 40 HOH HOH . H 5 HOH B 41 741 34 HOH HOH . H 5 HOH B 42 742 59 HOH HOH . H 5 HOH B 43 743 35 HOH HOH . H 5 HOH B 44 744 71 HOH HOH . H 5 HOH B 45 745 25 HOH HOH . H 5 HOH B 46 746 76 HOH HOH . H 5 HOH B 47 747 80 HOH HOH . H 5 HOH B 48 748 32 HOH HOH . H 5 HOH B 49 749 66 HOH HOH . H 5 HOH B 50 750 63 HOH HOH . H 5 HOH B 51 751 61 HOH HOH . H 5 HOH B 52 752 64 HOH HOH . H 5 HOH B 53 753 17 HOH HOH . H 5 HOH B 54 754 54 HOH HOH . H 5 HOH B 55 755 44 HOH HOH . H 5 HOH B 56 756 53 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x -15.595 _atom_site.Cartn_y -22.21 _atom_site.Cartn_z 30.849 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.04 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #