data_5VSV
#
_model_server_result.job_id            ZBX8FstRPEqsj2N2Ay1lCg 
_model_server_result.datetime_utc      '2024-11-13 05:06:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vsv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":500}' 
#
_entry.id    5VSV 
#
_exptl.entry_id    5VSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              348.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'INOSINIC ACID' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         110.83 
_cell.angle_beta          104.05 
_cell.angle_gamma         105.44 
_cell.entry_id            5VSV 
_cell.length_a            62.861 
_cell.length_b            77.637 
_cell.length_c            78.972 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
#
_chem_comp.formula           'C10 H13 N4 O8 P' 
_chem_comp.formula_weight    348.206 
_chem_comp.id                IMP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'INOSINIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P IMP doub 225 n n 
P O2P IMP sing 226 n n 
P O3P IMP sing 227 n n 
P O5' IMP sing 228 n n 
O2P HOP2 IMP sing 229 n n 
O3P HOP3 IMP sing 230 n n 
O5' C5' IMP sing 231 n n 
C5' C4' IMP sing 232 n n 
C5' "H5'1" IMP sing 233 n n 
C5' "H5'2" IMP sing 234 n n 
C4' O4' IMP sing 235 n n 
C4' C3' IMP sing 236 n n 
C4' H4' IMP sing 237 n n 
O4' C1' IMP sing 238 n n 
C3' O3' IMP sing 239 n n 
C3' C2' IMP sing 240 n n 
C3' H3' IMP sing 241 n n 
O3' HO3' IMP sing 242 n n 
C2' O2' IMP sing 243 n n 
C2' C1' IMP sing 244 n n 
C2' H2' IMP sing 245 n n 
O2' HO2' IMP sing 246 n n 
C1' N9 IMP sing 247 n n 
C1' H1' IMP sing 248 n n 
N9 C8 IMP sing 249 n y 
N9 C4 IMP sing 250 n y 
C8 N7 IMP doub 251 n y 
C8 H8 IMP sing 252 n n 
N7 C5 IMP sing 253 n y 
C5 C6 IMP sing 254 n n 
C5 C4 IMP doub 255 n y 
C6 O6 IMP doub 256 n n 
C6 N1 IMP sing 257 n n 
N1 C2 IMP sing 258 n n 
N1 HN1 IMP sing 259 n n 
C2 N3 IMP doub 260 n n 
C2 H2 IMP sing 261 n n 
N3 C4 IMP sing 262 n n 
#
_atom_sites.entry_id                     5VSV 
_atom_sites.fract_transf_matrix[1][1]    0.015908 
_atom_sites.fract_transf_matrix[1][2]    0.004393 
_atom_sites.fract_transf_matrix[1][3]    0.006668 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013363 
_atom_sites.fract_transf_matrix[2][3]    0.006724 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 IMP A 1 501 500 IMP IMP . 
F 3 8KY A 1 502 501 8KY 225 . 
G 3 8KY A 1 503 501 8KY 225 . 
H 2 IMP B 1 500 500 IMP IMP . 
I 3 8KY B 1 501 501 8KY 225 . 
J 2 IMP C 1 500 500 IMP IMP . 
K 3 8KY C 1 501 501 8KY 225 . 
L 2 IMP D 1 500 500 IMP IMP . 
M 4 HOH A 1 601 185 HOH HOH . 
M 4 HOH A 2 602 138 HOH HOH . 
M 4 HOH A 3 603 144 HOH HOH . 
M 4 HOH A 4 604 173 HOH HOH . 
M 4 HOH A 5 605 188 HOH HOH . 
M 4 HOH A 6 606 187 HOH HOH . 
M 4 HOH A 7 607 105 HOH HOH . 
M 4 HOH A 8 608 63 HOH HOH . 
M 4 HOH A 9 609 9 HOH HOH . 
M 4 HOH A 10 610 108 HOH HOH . 
M 4 HOH A 11 611 174 HOH HOH . 
M 4 HOH A 12 612 153 HOH HOH . 
M 4 HOH A 13 613 171 HOH HOH . 
M 4 HOH A 14 614 96 HOH HOH . 
M 4 HOH A 15 615 197 HOH HOH . 
M 4 HOH A 16 616 1 HOH HOH . 
M 4 HOH A 17 617 170 HOH HOH . 
M 4 HOH A 18 618 60 HOH HOH . 
M 4 HOH A 19 619 40 HOH HOH . 
M 4 HOH A 20 620 71 HOH HOH . 
M 4 HOH A 21 621 10 HOH HOH . 
M 4 HOH A 22 622 77 HOH HOH . 
M 4 HOH A 23 623 199 HOH HOH . 
M 4 HOH A 24 624 59 HOH HOH . 
M 4 HOH A 25 625 133 HOH HOH . 
M 4 HOH A 26 626 80 HOH HOH . 
M 4 HOH A 27 627 118 HOH HOH . 
M 4 HOH A 28 628 47 HOH HOH . 
M 4 HOH A 29 629 172 HOH HOH . 
M 4 HOH A 30 630 177 HOH HOH . 
M 4 HOH A 31 631 145 HOH HOH . 
M 4 HOH A 32 632 95 HOH HOH . 
M 4 HOH A 33 633 117 HOH HOH . 
M 4 HOH A 34 634 68 HOH HOH . 
M 4 HOH A 35 635 37 HOH HOH . 
M 4 HOH A 36 636 104 HOH HOH . 
M 4 HOH A 37 637 17 HOH HOH . 
M 4 HOH A 38 638 165 HOH HOH . 
M 4 HOH A 39 639 180 HOH HOH . 
M 4 HOH A 40 640 122 HOH HOH . 
M 4 HOH A 41 641 45 HOH HOH . 
M 4 HOH A 42 642 39 HOH HOH . 
M 4 HOH A 43 643 103 HOH HOH . 
M 4 HOH A 44 644 141 HOH HOH . 
M 4 HOH A 45 645 5 HOH HOH . 
M 4 HOH A 46 646 91 HOH HOH . 
M 4 HOH A 47 647 211 HOH HOH . 
M 4 HOH A 48 648 79 HOH HOH . 
M 4 HOH A 49 649 139 HOH HOH . 
M 4 HOH A 50 650 131 HOH HOH . 
M 4 HOH A 51 651 154 HOH HOH . 
M 4 HOH A 52 652 159 HOH HOH . 
M 4 HOH A 53 653 206 HOH HOH . 
M 4 HOH A 54 654 200 HOH HOH . 
M 4 HOH A 55 655 49 HOH HOH . 
M 4 HOH A 56 656 203 HOH HOH . 
M 4 HOH A 57 657 31 HOH HOH . 
N 4 HOH B 1 601 52 HOH HOH . 
N 4 HOH B 2 602 85 HOH HOH . 
N 4 HOH B 3 603 134 HOH HOH . 
N 4 HOH B 4 604 120 HOH HOH . 
N 4 HOH B 5 605 189 HOH HOH . 
N 4 HOH B 6 606 135 HOH HOH . 
N 4 HOH B 7 607 93 HOH HOH . 
N 4 HOH B 8 608 70 HOH HOH . 
N 4 HOH B 9 609 92 HOH HOH . 
N 4 HOH B 10 610 152 HOH HOH . 
N 4 HOH B 11 611 149 HOH HOH . 
N 4 HOH B 12 612 69 HOH HOH . 
N 4 HOH B 13 613 30 HOH HOH . 
N 4 HOH B 14 614 23 HOH HOH . 
N 4 HOH B 15 615 212 HOH HOH . 
N 4 HOH B 16 616 142 HOH HOH . 
N 4 HOH B 17 617 209 HOH HOH . 
N 4 HOH B 18 618 191 HOH HOH . 
N 4 HOH B 19 619 119 HOH HOH . 
N 4 HOH B 20 620 115 HOH HOH . 
N 4 HOH B 21 621 136 HOH HOH . 
N 4 HOH B 22 622 121 HOH HOH . 
N 4 HOH B 23 623 176 HOH HOH . 
N 4 HOH B 24 624 51 HOH HOH . 
N 4 HOH B 25 625 140 HOH HOH . 
N 4 HOH B 26 626 76 HOH HOH . 
N 4 HOH B 27 627 46 HOH HOH . 
N 4 HOH B 28 628 101 HOH HOH . 
N 4 HOH B 29 629 175 HOH HOH . 
N 4 HOH B 30 630 62 HOH HOH . 
N 4 HOH B 31 631 16 HOH HOH . 
N 4 HOH B 32 632 129 HOH HOH . 
N 4 HOH B 33 633 26 HOH HOH . 
N 4 HOH B 34 634 146 HOH HOH . 
N 4 HOH B 35 635 82 HOH HOH . 
N 4 HOH B 36 636 86 HOH HOH . 
N 4 HOH B 37 637 158 HOH HOH . 
N 4 HOH B 38 638 84 HOH HOH . 
N 4 HOH B 39 639 184 HOH HOH . 
N 4 HOH B 40 640 83 HOH HOH . 
N 4 HOH B 41 641 3 HOH HOH . 
N 4 HOH B 42 642 36 HOH HOH . 
N 4 HOH B 43 643 97 HOH HOH . 
N 4 HOH B 44 644 190 HOH HOH . 
O 4 HOH C 1 601 137 HOH HOH . 
O 4 HOH C 2 602 168 HOH HOH . 
O 4 HOH C 3 603 75 HOH HOH . 
O 4 HOH C 4 604 88 HOH HOH . 
O 4 HOH C 5 605 33 HOH HOH . 
O 4 HOH C 6 606 130 HOH HOH . 
O 4 HOH C 7 607 19 HOH HOH . 
O 4 HOH C 8 608 179 HOH HOH . 
O 4 HOH C 9 609 109 HOH HOH . 
O 4 HOH C 10 610 72 HOH HOH . 
O 4 HOH C 11 611 15 HOH HOH . 
O 4 HOH C 12 612 21 HOH HOH . 
O 4 HOH C 13 613 181 HOH HOH . 
O 4 HOH C 14 614 20 HOH HOH . 
O 4 HOH C 15 615 123 HOH HOH . 
O 4 HOH C 16 616 12 HOH HOH . 
O 4 HOH C 17 617 194 HOH HOH . 
O 4 HOH C 18 618 44 HOH HOH . 
O 4 HOH C 19 619 210 HOH HOH . 
O 4 HOH C 20 620 28 HOH HOH . 
O 4 HOH C 21 621 6 HOH HOH . 
O 4 HOH C 22 622 182 HOH HOH . 
O 4 HOH C 23 623 110 HOH HOH . 
O 4 HOH C 24 624 61 HOH HOH . 
O 4 HOH C 25 625 116 HOH HOH . 
O 4 HOH C 26 626 57 HOH HOH . 
O 4 HOH C 27 627 166 HOH HOH . 
O 4 HOH C 28 628 148 HOH HOH . 
O 4 HOH C 29 629 13 HOH HOH . 
O 4 HOH C 30 630 126 HOH HOH . 
O 4 HOH C 31 631 178 HOH HOH . 
O 4 HOH C 32 632 98 HOH HOH . 
O 4 HOH C 33 633 125 HOH HOH . 
O 4 HOH C 34 634 156 HOH HOH . 
O 4 HOH C 35 635 74 HOH HOH . 
O 4 HOH C 36 636 102 HOH HOH . 
O 4 HOH C 37 637 34 HOH HOH . 
O 4 HOH C 38 638 163 HOH HOH . 
O 4 HOH C 39 639 81 HOH HOH . 
O 4 HOH C 40 640 53 HOH HOH . 
O 4 HOH C 41 641 58 HOH HOH . 
O 4 HOH C 42 642 161 HOH HOH . 
O 4 HOH C 43 643 106 HOH HOH . 
O 4 HOH C 44 644 113 HOH HOH . 
O 4 HOH C 45 645 112 HOH HOH . 
O 4 HOH C 46 646 66 HOH HOH . 
O 4 HOH C 47 647 162 HOH HOH . 
O 4 HOH C 48 648 2 HOH HOH . 
O 4 HOH C 49 649 183 HOH HOH . 
O 4 HOH C 50 650 99 HOH HOH . 
O 4 HOH C 51 651 155 HOH HOH . 
P 4 HOH D 1 601 114 HOH HOH . 
P 4 HOH D 2 602 27 HOH HOH . 
P 4 HOH D 3 603 192 HOH HOH . 
P 4 HOH D 4 604 38 HOH HOH . 
P 4 HOH D 5 605 128 HOH HOH . 
P 4 HOH D 6 606 7 HOH HOH . 
P 4 HOH D 7 607 14 HOH HOH . 
P 4 HOH D 8 608 25 HOH HOH . 
P 4 HOH D 9 609 195 HOH HOH . 
P 4 HOH D 10 610 143 HOH HOH . 
P 4 HOH D 11 611 164 HOH HOH . 
P 4 HOH D 12 612 56 HOH HOH . 
P 4 HOH D 13 613 202 HOH HOH . 
P 4 HOH D 14 614 43 HOH HOH . 
P 4 HOH D 15 615 147 HOH HOH . 
P 4 HOH D 16 616 48 HOH HOH . 
P 4 HOH D 17 617 90 HOH HOH . 
P 4 HOH D 18 618 107 HOH HOH . 
P 4 HOH D 19 619 65 HOH HOH . 
P 4 HOH D 20 620 32 HOH HOH . 
P 4 HOH D 21 621 11 HOH HOH . 
P 4 HOH D 22 622 208 HOH HOH . 
P 4 HOH D 23 623 127 HOH HOH . 
P 4 HOH D 24 624 78 HOH HOH . 
P 4 HOH D 25 625 198 HOH HOH . 
P 4 HOH D 26 626 50 HOH HOH . 
P 4 HOH D 27 627 54 HOH HOH . 
P 4 HOH D 28 628 29 HOH HOH . 
P 4 HOH D 29 629 169 HOH HOH . 
P 4 HOH D 30 630 35 HOH HOH . 
P 4 HOH D 31 631 207 HOH HOH . 
P 4 HOH D 32 632 124 HOH HOH . 
P 4 HOH D 33 633 55 HOH HOH . 
P 4 HOH D 34 634 94 HOH HOH . 
P 4 HOH D 35 635 87 HOH HOH . 
P 4 HOH D 36 636 4 HOH HOH . 
P 4 HOH D 37 637 150 HOH HOH . 
P 4 HOH D 38 638 24 HOH HOH . 
P 4 HOH D 39 639 196 HOH HOH . 
P 4 HOH D 40 640 67 HOH HOH . 
P 4 HOH D 41 641 100 HOH HOH . 
P 4 HOH D 42 642 89 HOH HOH . 
P 4 HOH D 43 643 132 HOH HOH . 
P 4 HOH D 44 644 151 HOH HOH . 
P 4 HOH D 45 645 42 HOH HOH . 
P 4 HOH D 46 646 18 HOH HOH . 
P 4 HOH D 47 647 22 HOH HOH . 
P 4 HOH D 48 648 193 HOH HOH . 
P 4 HOH D 49 649 73 HOH HOH . 
P 4 HOH D 50 650 111 HOH HOH . 
P 4 HOH D 51 651 41 HOH HOH . 
P 4 HOH D 52 652 204 HOH HOH . 
P 4 HOH D 53 653 64 HOH HOH . 
P 4 HOH D 54 654 186 HOH HOH . 
P 4 HOH D 55 655 8 HOH HOH . 
P 4 HOH D 56 656 205 HOH HOH . 
P 4 HOH D 57 657 160 HOH HOH . 
P 4 HOH D 58 658 167 HOH HOH . 
P 4 HOH D 59 659 157 HOH HOH . 
P 4 HOH D 60 660 201 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P IMP . . . L 2 0.773 -15.505 16.722 1 30.51 ? P IMP 500 D 1 
HETATM 2 O O1P IMP . . . L 2 0.9 -14.626 15.485 1 31.33 ? O1P IMP 500 D 1 
HETATM 3 O O2P IMP . . . L 2 0.369 -16.902 16.283 1 28.76 ? O2P IMP 500 D 1 
HETATM 4 O O3P IMP . . . L 2 -0.15 -14.822 17.707 1 31.31 ? O3P IMP 500 D 1 
HETATM 5 O O5' IMP . . . L 2 2.252 -15.517 17.31 1 27.93 ? O5' IMP 500 D 1 
HETATM 6 C C5' IMP . . . L 2 2.612 -16.337 18.408 1 28.22 ? C5' IMP 500 D 1 
HETATM 7 C C4' IMP . . . L 2 4.112 -16.437 18.536 1 28.79 ? C4' IMP 500 D 1 
HETATM 8 O O4' IMP . . . L 2 4.652 -15.145 18.904 1 29.74 ? O4' IMP 500 D 1 
HETATM 9 C C3' IMP . . . L 2 4.633 -17.366 19.622 1 28.76 ? C3' IMP 500 D 1 
HETATM 10 O O3' IMP . . . L 2 4.639 -18.722 19.21 1 29.25 ? O3' IMP 500 D 1 
HETATM 11 C C2' IMP . . . L 2 6.028 -16.818 19.902 1 28.62 ? C2' IMP 500 D 1 
HETATM 12 O O2' IMP . . . L 2 6.937 -17.294 18.921 1 28.09 ? O2' IMP 500 D 1 
HETATM 13 C C1' IMP . . . L 2 5.835 -15.314 19.664 1 29.69 ? C1' IMP 500 D 1 
HETATM 14 N N9 IMP . . . L 2 5.691 -14.511 20.898 1 31.02 ? N9 IMP 500 D 1 
HETATM 15 C C8 IMP . . . L 2 4.929 -14.748 22.02 1 32.05 ? C8 IMP 500 D 1 
HETATM 16 N N7 IMP . . . L 2 5.053 -13.688 22.856 1 32.46 ? N7 IMP 500 D 1 
HETATM 17 C C5 IMP . . . L 2 5.854 -12.758 22.275 1 31.95 ? C5 IMP 500 D 1 
HETATM 18 C C6 IMP . . . L 2 6.308 -11.491 22.675 1 31.84 ? C6 IMP 500 D 1 
HETATM 19 O O6 IMP . . . L 2 5.733 -10.853 23.565 1 31.29 ? O6 IMP 500 D 1 
HETATM 20 N N1 IMP . . . L 2 7.136 -10.785 21.822 1 32.41 ? N1 IMP 500 D 1 
HETATM 21 C C2 IMP . . . L 2 7.513 -11.316 20.604 1 32.14 ? C2 IMP 500 D 1 
HETATM 22 N N3 IMP . . . L 2 7.053 -12.555 20.214 1 31.93 ? N3 IMP 500 D 1 
HETATM 23 C C4 IMP . . . L 2 6.251 -13.271 21.041 1 31.33 ? C4 IMP 500 D 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           23 
#