data_5VSV # _model_server_result.job_id v4Db39i15bk3oUtVkgVCMg _model_server_result.datetime_utc '2024-11-28 20:09:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vsv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 5VSV # _exptl.entry_id 5VSV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.871 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '{2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 110.83 _cell.angle_beta 104.05 _cell.angle_gamma 105.44 _cell.entry_id 5VSV _cell.length_a 62.861 _cell.length_b 77.637 _cell.length_c 78.972 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VSV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 I N N ? 3 K N N # _chem_comp.formula 'C21 H23 Cl N2 O4' _chem_comp.formula_weight 402.871 _chem_comp.id 8KY _chem_comp.mon_nstd_flag . _chem_comp.name '{2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C11 8KY sing 1 n n C2 C3 8KY doub 2 n y C2 C1 8KY sing 3 n y C3 C4 8KY sing 4 n y C12 C11 8KY sing 5 n n C11 C1 8KY sing 6 n n C11 N3 8KY sing 7 n n C1 C6 8KY doub 8 n y C4 C5 8KY doub 9 n y C6 C5 8KY sing 10 n y C5 C7 8KY sing 11 n n N3 C10 8KY sing 12 n n C7 C9 8KY doub 13 n n C7 C8 8KY sing 14 n n C10 O4 8KY doub 15 n n C10 N4 8KY sing 16 n n N4 C17 8KY sing 17 n n O3 C24 8KY doub 18 n n C17 C18 8KY doub 19 n y C17 C22 8KY sing 20 n y C18 C19 8KY sing 21 n y O25 C24 8KY sing 22 n n C24 C28 8KY sing 23 n n C22 C21 8KY doub 24 n y C19 O1 8KY sing 25 n n C19 C20 8KY doub 26 n y C28 O1 8KY sing 27 n n C21 C20 8KY sing 28 n y C20 CL 8KY sing 29 n n C13 H1 8KY sing 30 n n C13 H2 8KY sing 31 n n C13 H3 8KY sing 32 n n C2 H4 8KY sing 33 n n C12 H5 8KY sing 34 n n C12 H6 8KY sing 35 n n C12 H7 8KY sing 36 n n C18 H8 8KY sing 37 n n C4 H9 8KY sing 38 n n C3 H10 8KY sing 39 n n C6 H11 8KY sing 40 n n C8 H12 8KY sing 41 n n C8 H13 8KY sing 42 n n C8 H14 8KY sing 43 n n C9 H15 8KY sing 44 n n C9 H16 8KY sing 45 n n C21 H17 8KY sing 46 n n C22 H18 8KY sing 47 n n C28 H19 8KY sing 48 n n C28 H20 8KY sing 49 n n N3 H21 8KY sing 50 n n N4 H22 8KY sing 51 n n O25 H23 8KY sing 52 n n # _atom_sites.entry_id 5VSV _atom_sites.fract_transf_matrix[1][1] 0.015908 _atom_sites.fract_transf_matrix[1][2] 0.004393 _atom_sites.fract_transf_matrix[1][3] 0.006668 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013363 _atom_sites.fract_transf_matrix[2][3] 0.006724 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IMP A 1 501 500 IMP IMP . F 3 8KY A 1 502 501 8KY 225 . G 3 8KY A 1 503 501 8KY 225 . H 2 IMP B 1 500 500 IMP IMP . I 3 8KY B 1 501 501 8KY 225 . J 2 IMP C 1 500 500 IMP IMP . K 3 8KY C 1 501 501 8KY 225 . L 2 IMP D 1 500 500 IMP IMP . M 4 HOH A 1 601 185 HOH HOH . M 4 HOH A 2 602 138 HOH HOH . M 4 HOH A 3 603 144 HOH HOH . M 4 HOH A 4 604 173 HOH HOH . M 4 HOH A 5 605 188 HOH HOH . M 4 HOH A 6 606 187 HOH HOH . M 4 HOH A 7 607 105 HOH HOH . M 4 HOH A 8 608 63 HOH HOH . M 4 HOH A 9 609 9 HOH HOH . M 4 HOH A 10 610 108 HOH HOH . M 4 HOH A 11 611 174 HOH HOH . M 4 HOH A 12 612 153 HOH HOH . M 4 HOH A 13 613 171 HOH HOH . M 4 HOH A 14 614 96 HOH HOH . M 4 HOH A 15 615 197 HOH HOH . M 4 HOH A 16 616 1 HOH HOH . M 4 HOH A 17 617 170 HOH HOH . M 4 HOH A 18 618 60 HOH HOH . M 4 HOH A 19 619 40 HOH HOH . M 4 HOH A 20 620 71 HOH HOH . M 4 HOH A 21 621 10 HOH HOH . M 4 HOH A 22 622 77 HOH HOH . M 4 HOH A 23 623 199 HOH HOH . M 4 HOH A 24 624 59 HOH HOH . M 4 HOH A 25 625 133 HOH HOH . M 4 HOH A 26 626 80 HOH HOH . M 4 HOH A 27 627 118 HOH HOH . M 4 HOH A 28 628 47 HOH HOH . M 4 HOH A 29 629 172 HOH HOH . M 4 HOH A 30 630 177 HOH HOH . M 4 HOH A 31 631 145 HOH HOH . M 4 HOH A 32 632 95 HOH HOH . M 4 HOH A 33 633 117 HOH HOH . M 4 HOH A 34 634 68 HOH HOH . M 4 HOH A 35 635 37 HOH HOH . M 4 HOH A 36 636 104 HOH HOH . M 4 HOH A 37 637 17 HOH HOH . M 4 HOH A 38 638 165 HOH HOH . M 4 HOH A 39 639 180 HOH HOH . M 4 HOH A 40 640 122 HOH HOH . M 4 HOH A 41 641 45 HOH HOH . M 4 HOH A 42 642 39 HOH HOH . M 4 HOH A 43 643 103 HOH HOH . M 4 HOH A 44 644 141 HOH HOH . M 4 HOH A 45 645 5 HOH HOH . M 4 HOH A 46 646 91 HOH HOH . M 4 HOH A 47 647 211 HOH HOH . M 4 HOH A 48 648 79 HOH HOH . M 4 HOH A 49 649 139 HOH HOH . M 4 HOH A 50 650 131 HOH HOH . M 4 HOH A 51 651 154 HOH HOH . M 4 HOH A 52 652 159 HOH HOH . M 4 HOH A 53 653 206 HOH HOH . M 4 HOH A 54 654 200 HOH HOH . M 4 HOH A 55 655 49 HOH HOH . M 4 HOH A 56 656 203 HOH HOH . M 4 HOH A 57 657 31 HOH HOH . N 4 HOH B 1 601 52 HOH HOH . N 4 HOH B 2 602 85 HOH HOH . N 4 HOH B 3 603 134 HOH HOH . N 4 HOH B 4 604 120 HOH HOH . N 4 HOH B 5 605 189 HOH HOH . N 4 HOH B 6 606 135 HOH HOH . N 4 HOH B 7 607 93 HOH HOH . N 4 HOH B 8 608 70 HOH HOH . N 4 HOH B 9 609 92 HOH HOH . N 4 HOH B 10 610 152 HOH HOH . N 4 HOH B 11 611 149 HOH HOH . N 4 HOH B 12 612 69 HOH HOH . N 4 HOH B 13 613 30 HOH HOH . N 4 HOH B 14 614 23 HOH HOH . N 4 HOH B 15 615 212 HOH HOH . N 4 HOH B 16 616 142 HOH HOH . N 4 HOH B 17 617 209 HOH HOH . N 4 HOH B 18 618 191 HOH HOH . N 4 HOH B 19 619 119 HOH HOH . N 4 HOH B 20 620 115 HOH HOH . N 4 HOH B 21 621 136 HOH HOH . N 4 HOH B 22 622 121 HOH HOH . N 4 HOH B 23 623 176 HOH HOH . N 4 HOH B 24 624 51 HOH HOH . N 4 HOH B 25 625 140 HOH HOH . N 4 HOH B 26 626 76 HOH HOH . N 4 HOH B 27 627 46 HOH HOH . N 4 HOH B 28 628 101 HOH HOH . N 4 HOH B 29 629 175 HOH HOH . N 4 HOH B 30 630 62 HOH HOH . N 4 HOH B 31 631 16 HOH HOH . N 4 HOH B 32 632 129 HOH HOH . N 4 HOH B 33 633 26 HOH HOH . N 4 HOH B 34 634 146 HOH HOH . N 4 HOH B 35 635 82 HOH HOH . N 4 HOH B 36 636 86 HOH HOH . N 4 HOH B 37 637 158 HOH HOH . N 4 HOH B 38 638 84 HOH HOH . N 4 HOH B 39 639 184 HOH HOH . N 4 HOH B 40 640 83 HOH HOH . N 4 HOH B 41 641 3 HOH HOH . N 4 HOH B 42 642 36 HOH HOH . N 4 HOH B 43 643 97 HOH HOH . N 4 HOH B 44 644 190 HOH HOH . O 4 HOH C 1 601 137 HOH HOH . O 4 HOH C 2 602 168 HOH HOH . O 4 HOH C 3 603 75 HOH HOH . O 4 HOH C 4 604 88 HOH HOH . O 4 HOH C 5 605 33 HOH HOH . O 4 HOH C 6 606 130 HOH HOH . O 4 HOH C 7 607 19 HOH HOH . O 4 HOH C 8 608 179 HOH HOH . O 4 HOH C 9 609 109 HOH HOH . O 4 HOH C 10 610 72 HOH HOH . O 4 HOH C 11 611 15 HOH HOH . O 4 HOH C 12 612 21 HOH HOH . O 4 HOH C 13 613 181 HOH HOH . O 4 HOH C 14 614 20 HOH HOH . O 4 HOH C 15 615 123 HOH HOH . O 4 HOH C 16 616 12 HOH HOH . O 4 HOH C 17 617 194 HOH HOH . O 4 HOH C 18 618 44 HOH HOH . O 4 HOH C 19 619 210 HOH HOH . O 4 HOH C 20 620 28 HOH HOH . O 4 HOH C 21 621 6 HOH HOH . O 4 HOH C 22 622 182 HOH HOH . O 4 HOH C 23 623 110 HOH HOH . O 4 HOH C 24 624 61 HOH HOH . O 4 HOH C 25 625 116 HOH HOH . O 4 HOH C 26 626 57 HOH HOH . O 4 HOH C 27 627 166 HOH HOH . O 4 HOH C 28 628 148 HOH HOH . O 4 HOH C 29 629 13 HOH HOH . O 4 HOH C 30 630 126 HOH HOH . O 4 HOH C 31 631 178 HOH HOH . O 4 HOH C 32 632 98 HOH HOH . O 4 HOH C 33 633 125 HOH HOH . O 4 HOH C 34 634 156 HOH HOH . O 4 HOH C 35 635 74 HOH HOH . O 4 HOH C 36 636 102 HOH HOH . O 4 HOH C 37 637 34 HOH HOH . O 4 HOH C 38 638 163 HOH HOH . O 4 HOH C 39 639 81 HOH HOH . O 4 HOH C 40 640 53 HOH HOH . O 4 HOH C 41 641 58 HOH HOH . O 4 HOH C 42 642 161 HOH HOH . O 4 HOH C 43 643 106 HOH HOH . O 4 HOH C 44 644 113 HOH HOH . O 4 HOH C 45 645 112 HOH HOH . O 4 HOH C 46 646 66 HOH HOH . O 4 HOH C 47 647 162 HOH HOH . O 4 HOH C 48 648 2 HOH HOH . O 4 HOH C 49 649 183 HOH HOH . O 4 HOH C 50 650 99 HOH HOH . O 4 HOH C 51 651 155 HOH HOH . P 4 HOH D 1 601 114 HOH HOH . P 4 HOH D 2 602 27 HOH HOH . P 4 HOH D 3 603 192 HOH HOH . P 4 HOH D 4 604 38 HOH HOH . P 4 HOH D 5 605 128 HOH HOH . P 4 HOH D 6 606 7 HOH HOH . P 4 HOH D 7 607 14 HOH HOH . P 4 HOH D 8 608 25 HOH HOH . P 4 HOH D 9 609 195 HOH HOH . P 4 HOH D 10 610 143 HOH HOH . P 4 HOH D 11 611 164 HOH HOH . P 4 HOH D 12 612 56 HOH HOH . P 4 HOH D 13 613 202 HOH HOH . P 4 HOH D 14 614 43 HOH HOH . P 4 HOH D 15 615 147 HOH HOH . P 4 HOH D 16 616 48 HOH HOH . P 4 HOH D 17 617 90 HOH HOH . P 4 HOH D 18 618 107 HOH HOH . P 4 HOH D 19 619 65 HOH HOH . P 4 HOH D 20 620 32 HOH HOH . P 4 HOH D 21 621 11 HOH HOH . P 4 HOH D 22 622 208 HOH HOH . P 4 HOH D 23 623 127 HOH HOH . P 4 HOH D 24 624 78 HOH HOH . P 4 HOH D 25 625 198 HOH HOH . P 4 HOH D 26 626 50 HOH HOH . P 4 HOH D 27 627 54 HOH HOH . P 4 HOH D 28 628 29 HOH HOH . P 4 HOH D 29 629 169 HOH HOH . P 4 HOH D 30 630 35 HOH HOH . P 4 HOH D 31 631 207 HOH HOH . P 4 HOH D 32 632 124 HOH HOH . P 4 HOH D 33 633 55 HOH HOH . P 4 HOH D 34 634 94 HOH HOH . P 4 HOH D 35 635 87 HOH HOH . P 4 HOH D 36 636 4 HOH HOH . P 4 HOH D 37 637 150 HOH HOH . P 4 HOH D 38 638 24 HOH HOH . P 4 HOH D 39 639 196 HOH HOH . P 4 HOH D 40 640 67 HOH HOH . P 4 HOH D 41 641 100 HOH HOH . P 4 HOH D 42 642 89 HOH HOH . P 4 HOH D 43 643 132 HOH HOH . P 4 HOH D 44 644 151 HOH HOH . P 4 HOH D 45 645 42 HOH HOH . P 4 HOH D 46 646 18 HOH HOH . P 4 HOH D 47 647 22 HOH HOH . P 4 HOH D 48 648 193 HOH HOH . P 4 HOH D 49 649 73 HOH HOH . P 4 HOH D 50 650 111 HOH HOH . P 4 HOH D 51 651 41 HOH HOH . P 4 HOH D 52 652 204 HOH HOH . P 4 HOH D 53 653 64 HOH HOH . P 4 HOH D 54 654 186 HOH HOH . P 4 HOH D 55 655 8 HOH HOH . P 4 HOH D 56 656 205 HOH HOH . P 4 HOH D 57 657 160 HOH HOH . P 4 HOH D 58 658 167 HOH HOH . P 4 HOH D 59 659 157 HOH HOH . P 4 HOH D 60 660 201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 8KY . . . F 3 -19.856 11.687 -19.767 1 30.48 ? C13 8KY 502 A 1 HETATM 2 O O1 8KY . . . F 3 -15.251 11.132 -27.582 1 35.18 ? O1 8KY 502 A 1 HETATM 3 C C2 8KY . . . F 3 -19.089 14.704 -20.725 1 31.27 ? C2 8KY 502 A 1 HETATM 4 C C1 8KY . . . F 3 -18.485 13.459 -20.649 1 30.84 ? C1 8KY 502 A 1 HETATM 5 C C12 8KY . . . F 3 -20.385 12.634 -22.005 1 30.46 ? C12 8KY 502 A 1 HETATM 6 C C5 8KY . . . F 3 -16.459 14.436 -19.787 1 29.74 ? C5 8KY 502 A 1 HETATM 7 C C18 8KY . . . F 3 -16.127 10.813 -25.324 1 34.45 ? C18 8KY 502 A 1 HETATM 8 C C4 8KY . . . F 3 -17.062 15.687 -19.877 1 30.69 ? C4 8KY 502 A 1 HETATM 9 O O3 8KY . . . F 3 -14.142 13.517 -27.027 1 29.28 ? O3 8KY 502 A 1 HETATM 10 O O4 8KY . . . F 3 -17.937 12.223 -23.622 1 32.57 ? O4 8KY 502 A 1 HETATM 11 C C17 8KY . . . F 3 -16.145 10.036 -24.162 1 34.07 ? C17 8KY 502 A 1 HETATM 12 C C3 8KY . . . F 3 -18.366 15.825 -20.34 1 30.93 ? C3 8KY 502 A 1 HETATM 13 C C6 8KY . . . F 3 -17.181 13.318 -20.179 1 30.02 ? C6 8KY 502 A 1 HETATM 14 C C7 8KY . . . F 3 -15.038 14.303 -19.291 1 28.57 ? C7 8KY 502 A 1 HETATM 15 C C8 8KY . . . F 3 -14.46 13.114 -19.295 1 28.26 ? C8 8KY 502 A 1 HETATM 16 C C9 8KY . . . F 3 -14.355 15.359 -18.867 1 27.1 ? C9 8KY 502 A 1 HETATM 17 C C10 8KY . . . F 3 -17.721 11.328 -22.816 1 32.58 ? C10 8KY 502 A 1 HETATM 18 C C11 8KY . . . F 3 -19.252 12.25 -21.051 1 31.03 ? C11 8KY 502 A 1 HETATM 19 C C19 8KY . . . F 3 -15.322 10.421 -26.402 1 35.93 ? C19 8KY 502 A 1 HETATM 20 C C20 8KY . . . F 3 -14.551 9.273 -26.331 1 37.25 ? C20 8KY 502 A 1 HETATM 21 C C21 8KY . . . F 3 -14.562 8.492 -25.182 1 35.54 ? C21 8KY 502 A 1 HETATM 22 C C22 8KY . . . F 3 -15.358 8.882 -24.113 1 34.81 ? C22 8KY 502 A 1 HETATM 23 C C24 8KY . . . F 3 -15.394 13.432 -27.062 1 30.72 ? C24 8KY 502 A 1 HETATM 24 C C28 8KY . . . F 3 -16.034 12.297 -27.808 1 32.81 ? C28 8KY 502 A 1 HETATM 25 N N3 8KY . . . F 3 -18.313 11.287 -21.618 1 31.76 ? N3 8KY 502 A 1 HETATM 26 N N4 8KY . . . F 3 -16.894 10.304 -23.055 1 33.2 ? N4 8KY 502 A 1 HETATM 27 O O25 8KY . . . F 3 -16.166 14.227 -26.512 1 31.01 ? O25 8KY 502 A 1 HETATM 28 CL CL 8KY . . . F 3 -13.54 8.832 -27.763 1 40.2 ? CL 8KY 502 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 411 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #