data_5VUA
#
_model_server_result.job_id            Svg6fm_IoN-dbd-Olbjtkw 
_model_server_result.datetime_utc      '2025-01-26 02:41:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vua 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5VUA 
#
_exptl.entry_id    5VUA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VUA 
_cell.length_a            98.14 
_cell.length_b            98.14 
_cell.length_c            80.51 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VUA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 184 n n 
C1 C2 GOL sing 185 n n 
C1 H11 GOL sing 186 n n 
C1 H12 GOL sing 187 n n 
O1 HO1 GOL sing 188 n n 
C2 O2 GOL sing 189 n n 
C2 C3 GOL sing 190 n n 
C2 H2 GOL sing 191 n n 
O2 HO2 GOL sing 192 n n 
C3 O3 GOL sing 193 n n 
C3 H31 GOL sing 194 n n 
C3 H32 GOL sing 195 n n 
O3 HO3 GOL sing 196 n n 
#
_atom_sites.entry_id                     5VUA 
_atom_sites.fract_transf_matrix[1][1]    0.01019 
_atom_sites.fract_transf_matrix[1][2]    0.005883 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011766 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012421 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL B 1 401 1 GOL GOL . 
C 3 PO4 B 1 402 1 PO4 PO4 . 
D 4 8GX B 1 403 1 8GX LIG . 
E 5 HOH B 1 501 171 HOH HOH . 
E 5 HOH B 2 502 180 HOH HOH . 
E 5 HOH B 3 503 175 HOH HOH . 
E 5 HOH B 4 504 3 HOH HOH . 
E 5 HOH B 5 505 179 HOH HOH . 
E 5 HOH B 6 506 176 HOH HOH . 
E 5 HOH B 7 507 57 HOH HOH . 
E 5 HOH B 8 508 157 HOH HOH . 
E 5 HOH B 9 509 200 HOH HOH . 
E 5 HOH B 10 510 95 HOH HOH . 
E 5 HOH B 11 511 140 HOH HOH . 
E 5 HOH B 12 512 73 HOH HOH . 
E 5 HOH B 13 513 46 HOH HOH . 
E 5 HOH B 14 514 145 HOH HOH . 
E 5 HOH B 15 515 88 HOH HOH . 
E 5 HOH B 16 516 32 HOH HOH . 
E 5 HOH B 17 517 92 HOH HOH . 
E 5 HOH B 18 518 174 HOH HOH . 
E 5 HOH B 19 519 39 HOH HOH . 
E 5 HOH B 20 520 55 HOH HOH . 
E 5 HOH B 21 521 155 HOH HOH . 
E 5 HOH B 22 522 45 HOH HOH . 
E 5 HOH B 23 523 40 HOH HOH . 
E 5 HOH B 24 524 54 HOH HOH . 
E 5 HOH B 25 525 86 HOH HOH . 
E 5 HOH B 26 526 210 HOH HOH . 
E 5 HOH B 27 527 65 HOH HOH . 
E 5 HOH B 28 528 26 HOH HOH . 
E 5 HOH B 29 529 186 HOH HOH . 
E 5 HOH B 30 530 9 HOH HOH . 
E 5 HOH B 31 531 78 HOH HOH . 
E 5 HOH B 32 532 109 HOH HOH . 
E 5 HOH B 33 533 47 HOH HOH . 
E 5 HOH B 34 534 33 HOH HOH . 
E 5 HOH B 35 535 127 HOH HOH . 
E 5 HOH B 36 536 22 HOH HOH . 
E 5 HOH B 37 537 43 HOH HOH . 
E 5 HOH B 38 538 5 HOH HOH . 
E 5 HOH B 39 539 129 HOH HOH . 
E 5 HOH B 40 540 29 HOH HOH . 
E 5 HOH B 41 541 108 HOH HOH . 
E 5 HOH B 42 542 199 HOH HOH . 
E 5 HOH B 43 543 15 HOH HOH . 
E 5 HOH B 44 544 8 HOH HOH . 
E 5 HOH B 45 545 69 HOH HOH . 
E 5 HOH B 46 546 122 HOH HOH . 
E 5 HOH B 47 547 124 HOH HOH . 
E 5 HOH B 48 548 63 HOH HOH . 
E 5 HOH B 49 549 70 HOH HOH . 
E 5 HOH B 50 550 123 HOH HOH . 
E 5 HOH B 51 551 30 HOH HOH . 
E 5 HOH B 52 552 16 HOH HOH . 
E 5 HOH B 53 553 126 HOH HOH . 
E 5 HOH B 54 554 13 HOH HOH . 
E 5 HOH B 55 555 198 HOH HOH . 
E 5 HOH B 56 556 203 HOH HOH . 
E 5 HOH B 57 557 38 HOH HOH . 
E 5 HOH B 58 558 49 HOH HOH . 
E 5 HOH B 59 559 11 HOH HOH . 
E 5 HOH B 60 560 53 HOH HOH . 
E 5 HOH B 61 561 101 HOH HOH . 
E 5 HOH B 62 562 17 HOH HOH . 
E 5 HOH B 63 563 152 HOH HOH . 
E 5 HOH B 64 564 23 HOH HOH . 
E 5 HOH B 65 565 170 HOH HOH . 
E 5 HOH B 66 566 132 HOH HOH . 
E 5 HOH B 67 567 66 HOH HOH . 
E 5 HOH B 68 568 168 HOH HOH . 
E 5 HOH B 69 569 113 HOH HOH . 
E 5 HOH B 70 570 75 HOH HOH . 
E 5 HOH B 71 571 166 HOH HOH . 
E 5 HOH B 72 572 10 HOH HOH . 
E 5 HOH B 73 573 115 HOH HOH . 
E 5 HOH B 74 574 116 HOH HOH . 
E 5 HOH B 75 575 7 HOH HOH . 
E 5 HOH B 76 576 41 HOH HOH . 
E 5 HOH B 77 577 52 HOH HOH . 
E 5 HOH B 78 578 4 HOH HOH . 
E 5 HOH B 79 579 72 HOH HOH . 
E 5 HOH B 80 580 195 HOH HOH . 
E 5 HOH B 81 581 206 HOH HOH . 
E 5 HOH B 82 582 156 HOH HOH . 
E 5 HOH B 83 583 12 HOH HOH . 
E 5 HOH B 84 584 61 HOH HOH . 
E 5 HOH B 85 585 142 HOH HOH . 
E 5 HOH B 86 586 99 HOH HOH . 
E 5 HOH B 87 587 35 HOH HOH . 
E 5 HOH B 88 588 139 HOH HOH . 
E 5 HOH B 89 589 56 HOH HOH . 
E 5 HOH B 90 590 34 HOH HOH . 
E 5 HOH B 91 591 165 HOH HOH . 
E 5 HOH B 92 592 144 HOH HOH . 
E 5 HOH B 93 593 188 HOH HOH . 
E 5 HOH B 94 594 50 HOH HOH . 
E 5 HOH B 95 595 21 HOH HOH . 
E 5 HOH B 96 596 98 HOH HOH . 
E 5 HOH B 97 597 209 HOH HOH . 
E 5 HOH B 98 598 105 HOH HOH . 
E 5 HOH B 99 599 18 HOH HOH . 
E 5 HOH B 100 600 134 HOH HOH . 
E 5 HOH B 101 601 100 HOH HOH . 
E 5 HOH B 102 602 119 HOH HOH . 
E 5 HOH B 103 603 162 HOH HOH . 
E 5 HOH B 104 604 190 HOH HOH . 
E 5 HOH B 105 605 25 HOH HOH . 
E 5 HOH B 106 606 135 HOH HOH . 
E 5 HOH B 107 607 192 HOH HOH . 
E 5 HOH B 108 608 143 HOH HOH . 
E 5 HOH B 109 609 164 HOH HOH . 
E 5 HOH B 110 610 81 HOH HOH . 
E 5 HOH B 111 611 87 HOH HOH . 
E 5 HOH B 112 612 1 HOH HOH . 
E 5 HOH B 113 613 2 HOH HOH . 
E 5 HOH B 114 614 107 HOH HOH . 
E 5 HOH B 115 615 137 HOH HOH . 
E 5 HOH B 116 616 82 HOH HOH . 
E 5 HOH B 117 617 84 HOH HOH . 
E 5 HOH B 118 618 27 HOH HOH . 
E 5 HOH B 119 619 80 HOH HOH . 
E 5 HOH B 120 620 189 HOH HOH . 
E 5 HOH B 121 621 191 HOH HOH . 
E 5 HOH B 122 622 51 HOH HOH . 
E 5 HOH B 123 623 204 HOH HOH . 
E 5 HOH B 124 624 83 HOH HOH . 
E 5 HOH B 125 625 91 HOH HOH . 
E 5 HOH B 126 626 71 HOH HOH . 
E 5 HOH B 127 627 48 HOH HOH . 
E 5 HOH B 128 628 151 HOH HOH . 
E 5 HOH B 129 629 59 HOH HOH . 
E 5 HOH B 130 630 79 HOH HOH . 
E 5 HOH B 131 631 94 HOH HOH . 
E 5 HOH B 132 632 6 HOH HOH . 
E 5 HOH B 133 633 14 HOH HOH . 
E 5 HOH B 134 634 36 HOH HOH . 
E 5 HOH B 135 635 44 HOH HOH . 
E 5 HOH B 136 636 24 HOH HOH . 
E 5 HOH B 137 637 60 HOH HOH . 
E 5 HOH B 138 638 114 HOH HOH . 
E 5 HOH B 139 639 102 HOH HOH . 
E 5 HOH B 140 640 104 HOH HOH . 
E 5 HOH B 141 641 31 HOH HOH . 
E 5 HOH B 142 642 147 HOH HOH . 
E 5 HOH B 143 643 193 HOH HOH . 
E 5 HOH B 144 644 213 HOH HOH . 
E 5 HOH B 145 645 93 HOH HOH . 
E 5 HOH B 146 646 120 HOH HOH . 
E 5 HOH B 147 647 19 HOH HOH . 
E 5 HOH B 148 648 28 HOH HOH . 
E 5 HOH B 149 649 184 HOH HOH . 
E 5 HOH B 150 650 148 HOH HOH . 
E 5 HOH B 151 651 136 HOH HOH . 
E 5 HOH B 152 652 130 HOH HOH . 
E 5 HOH B 153 653 42 HOH HOH . 
E 5 HOH B 154 654 62 HOH HOH . 
E 5 HOH B 155 655 202 HOH HOH . 
E 5 HOH B 156 656 201 HOH HOH . 
E 5 HOH B 157 657 185 HOH HOH . 
E 5 HOH B 158 658 58 HOH HOH . 
E 5 HOH B 159 659 74 HOH HOH . 
E 5 HOH B 160 660 118 HOH HOH . 
E 5 HOH B 161 661 110 HOH HOH . 
E 5 HOH B 162 662 158 HOH HOH . 
E 5 HOH B 163 663 77 HOH HOH . 
E 5 HOH B 164 664 111 HOH HOH . 
E 5 HOH B 165 665 106 HOH HOH . 
E 5 HOH B 166 666 128 HOH HOH . 
E 5 HOH B 167 667 37 HOH HOH . 
E 5 HOH B 168 668 133 HOH HOH . 
E 5 HOH B 169 669 64 HOH HOH . 
E 5 HOH B 170 670 150 HOH HOH . 
E 5 HOH B 171 671 207 HOH HOH . 
E 5 HOH B 172 672 20 HOH HOH . 
E 5 HOH B 173 673 89 HOH HOH . 
E 5 HOH B 174 674 67 HOH HOH . 
E 5 HOH B 175 675 194 HOH HOH . 
E 5 HOH B 176 676 76 HOH HOH . 
E 5 HOH B 177 677 172 HOH HOH . 
E 5 HOH B 178 678 173 HOH HOH . 
E 5 HOH B 179 679 68 HOH HOH . 
E 5 HOH B 180 680 90 HOH HOH . 
E 5 HOH B 181 681 187 HOH HOH . 
E 5 HOH B 182 682 138 HOH HOH . 
E 5 HOH B 183 683 131 HOH HOH . 
E 5 HOH B 184 684 159 HOH HOH . 
E 5 HOH B 185 685 177 HOH HOH . 
E 5 HOH B 186 686 97 HOH HOH . 
E 5 HOH B 187 687 167 HOH HOH . 
E 5 HOH B 188 688 121 HOH HOH . 
E 5 HOH B 189 689 183 HOH HOH . 
E 5 HOH B 190 690 96 HOH HOH . 
E 5 HOH B 191 691 182 HOH HOH . 
E 5 HOH B 192 692 181 HOH HOH . 
E 5 HOH B 193 693 146 HOH HOH . 
E 5 HOH B 194 694 103 HOH HOH . 
E 5 HOH B 195 695 169 HOH HOH . 
E 5 HOH B 196 696 141 HOH HOH . 
E 5 HOH B 197 697 117 HOH HOH . 
E 5 HOH B 198 698 197 HOH HOH . 
E 5 HOH B 199 699 163 HOH HOH . 
E 5 HOH B 200 700 149 HOH HOH . 
E 5 HOH B 201 701 161 HOH HOH . 
E 5 HOH B 202 702 208 HOH HOH . 
E 5 HOH B 203 703 212 HOH HOH . 
E 5 HOH B 204 704 196 HOH HOH . 
E 5 HOH B 205 705 85 HOH HOH . 
E 5 HOH B 206 706 205 HOH HOH . 
E 5 HOH B 207 707 160 HOH HOH . 
E 5 HOH B 208 708 153 HOH HOH . 
E 5 HOH B 209 709 211 HOH HOH . 
E 5 HOH B 210 710 178 HOH HOH . 
E 5 HOH B 211 711 112 HOH HOH . 
E 5 HOH B 212 712 154 HOH HOH . 
E 5 HOH B 213 713 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 9.196 -42.48 -15.819 1 44.29 ? C1 GOL 401 B 1 
HETATM 2 O O1 GOL . . . B 2 8.487 -43.035 -16.905 1 50.88 ? O1 GOL 401 B 1 
HETATM 3 C C2 GOL . . . B 2 8.585 -42.991 -14.519 1 44.72 ? C2 GOL 401 B 1 
HETATM 4 O O2 GOL . . . B 2 7.687 -42.02 -14.018 1 49.65 ? O2 GOL 401 B 1 
HETATM 5 C C3 GOL . . . B 2 9.703 -43.237 -13.509 1 41.22 ? C3 GOL 401 B 1 
HETATM 6 O O3 GOL . . . B 2 9.163 -43.733 -12.3 1 40.49 ? O3 GOL 401 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#