data_5VUC # _model_server_result.job_id JbhxgfSPFE-U0VS6g-i5LQ _model_server_result.datetime_utc '2024-11-04 20:08:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vuc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5VUC # _exptl.entry_id 5VUC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.447 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-2-(1H-indol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VUC _cell.length_a 98.37 _cell.length_b 98.37 _cell.length_c 80.68 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VUC _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 133 B ASN 160 1_555 A N CSO 134 B CSO 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A C CSO 134 B CSO 161 1_555 A N GLY 135 B GLY 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C23 H23 N3 O3' _chem_comp.formula_weight 389.447 _chem_comp.id 8GR _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-2-(1H-indol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VUC _atom_sites.fract_transf_matrix[1][1] 0.010166 _atom_sites.fract_transf_matrix[1][2] 0.005869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL B 1 401 1 GOL GOL . C 3 8GR B 1 402 1 8GR LIG . D 4 HOH B 1 501 244 HOH HOH . D 4 HOH B 2 502 84 HOH HOH . D 4 HOH B 3 503 237 HOH HOH . D 4 HOH B 4 504 176 HOH HOH . D 4 HOH B 5 505 243 HOH HOH . D 4 HOH B 6 506 95 HOH HOH . D 4 HOH B 7 507 63 HOH HOH . D 4 HOH B 8 508 188 HOH HOH . D 4 HOH B 9 509 250 HOH HOH . D 4 HOH B 10 510 206 HOH HOH . D 4 HOH B 11 511 222 HOH HOH . D 4 HOH B 12 512 101 HOH HOH . D 4 HOH B 13 513 81 HOH HOH . D 4 HOH B 14 514 164 HOH HOH . D 4 HOH B 15 515 123 HOH HOH . D 4 HOH B 16 516 83 HOH HOH . D 4 HOH B 17 517 195 HOH HOH . D 4 HOH B 18 518 47 HOH HOH . D 4 HOH B 19 519 56 HOH HOH . D 4 HOH B 20 520 100 HOH HOH . D 4 HOH B 21 521 94 HOH HOH . D 4 HOH B 22 522 20 HOH HOH . D 4 HOH B 23 523 218 HOH HOH . D 4 HOH B 24 524 26 HOH HOH . D 4 HOH B 25 525 48 HOH HOH . D 4 HOH B 26 526 13 HOH HOH . D 4 HOH B 27 527 58 HOH HOH . D 4 HOH B 28 528 248 HOH HOH . D 4 HOH B 29 529 49 HOH HOH . D 4 HOH B 30 530 72 HOH HOH . D 4 HOH B 31 531 5 HOH HOH . D 4 HOH B 32 532 60 HOH HOH . D 4 HOH B 33 533 44 HOH HOH . D 4 HOH B 34 534 88 HOH HOH . D 4 HOH B 35 535 240 HOH HOH . D 4 HOH B 36 536 36 HOH HOH . D 4 HOH B 37 537 107 HOH HOH . D 4 HOH B 38 538 121 HOH HOH . D 4 HOH B 39 539 227 HOH HOH . D 4 HOH B 40 540 144 HOH HOH . D 4 HOH B 41 541 61 HOH HOH . D 4 HOH B 42 542 156 HOH HOH . D 4 HOH B 43 543 231 HOH HOH . D 4 HOH B 44 544 9 HOH HOH . D 4 HOH B 45 545 23 HOH HOH . D 4 HOH B 46 546 62 HOH HOH . D 4 HOH B 47 547 163 HOH HOH . D 4 HOH B 48 548 66 HOH HOH . D 4 HOH B 49 549 24 HOH HOH . D 4 HOH B 50 550 64 HOH HOH . D 4 HOH B 51 551 236 HOH HOH . D 4 HOH B 52 552 228 HOH HOH . D 4 HOH B 53 553 31 HOH HOH . D 4 HOH B 54 554 219 HOH HOH . D 4 HOH B 55 555 52 HOH HOH . D 4 HOH B 56 556 32 HOH HOH . D 4 HOH B 57 557 11 HOH HOH . D 4 HOH B 58 558 41 HOH HOH . D 4 HOH B 59 559 245 HOH HOH . D 4 HOH B 60 560 1 HOH HOH . D 4 HOH B 61 561 35 HOH HOH . D 4 HOH B 62 562 55 HOH HOH . D 4 HOH B 63 563 103 HOH HOH . D 4 HOH B 64 564 131 HOH HOH . D 4 HOH B 65 565 109 HOH HOH . D 4 HOH B 66 566 241 HOH HOH . D 4 HOH B 67 567 124 HOH HOH . D 4 HOH B 68 568 25 HOH HOH . D 4 HOH B 69 569 3 HOH HOH . D 4 HOH B 70 570 111 HOH HOH . D 4 HOH B 71 571 132 HOH HOH . D 4 HOH B 72 572 50 HOH HOH . D 4 HOH B 73 573 118 HOH HOH . D 4 HOH B 74 574 224 HOH HOH . D 4 HOH B 75 575 212 HOH HOH . D 4 HOH B 76 576 157 HOH HOH . D 4 HOH B 77 577 80 HOH HOH . D 4 HOH B 78 578 14 HOH HOH . D 4 HOH B 79 579 6 HOH HOH . D 4 HOH B 80 580 134 HOH HOH . D 4 HOH B 81 581 38 HOH HOH . D 4 HOH B 82 582 54 HOH HOH . D 4 HOH B 83 583 68 HOH HOH . D 4 HOH B 84 584 146 HOH HOH . D 4 HOH B 85 585 15 HOH HOH . D 4 HOH B 86 586 79 HOH HOH . D 4 HOH B 87 587 34 HOH HOH . D 4 HOH B 88 588 65 HOH HOH . D 4 HOH B 89 589 232 HOH HOH . D 4 HOH B 90 590 78 HOH HOH . D 4 HOH B 91 591 99 HOH HOH . D 4 HOH B 92 592 4 HOH HOH . D 4 HOH B 93 593 28 HOH HOH . D 4 HOH B 94 594 246 HOH HOH . D 4 HOH B 95 595 2 HOH HOH . D 4 HOH B 96 596 129 HOH HOH . D 4 HOH B 97 597 169 HOH HOH . D 4 HOH B 98 598 184 HOH HOH . D 4 HOH B 99 599 252 HOH HOH . D 4 HOH B 100 600 191 HOH HOH . D 4 HOH B 101 601 180 HOH HOH . D 4 HOH B 102 602 21 HOH HOH . D 4 HOH B 103 603 190 HOH HOH . D 4 HOH B 104 604 8 HOH HOH . D 4 HOH B 105 605 133 HOH HOH . D 4 HOH B 106 606 161 HOH HOH . D 4 HOH B 107 607 97 HOH HOH . D 4 HOH B 108 608 179 HOH HOH . D 4 HOH B 109 609 141 HOH HOH . D 4 HOH B 110 610 98 HOH HOH . D 4 HOH B 111 611 104 HOH HOH . D 4 HOH B 112 612 122 HOH HOH . D 4 HOH B 113 613 40 HOH HOH . D 4 HOH B 114 614 43 HOH HOH . D 4 HOH B 115 615 139 HOH HOH . D 4 HOH B 116 616 125 HOH HOH . D 4 HOH B 117 617 19 HOH HOH . D 4 HOH B 118 618 115 HOH HOH . D 4 HOH B 119 619 89 HOH HOH . D 4 HOH B 120 620 10 HOH HOH . D 4 HOH B 121 621 185 HOH HOH . D 4 HOH B 122 622 42 HOH HOH . D 4 HOH B 123 623 106 HOH HOH . D 4 HOH B 124 624 90 HOH HOH . D 4 HOH B 125 625 150 HOH HOH . D 4 HOH B 126 626 29 HOH HOH . D 4 HOH B 127 627 86 HOH HOH . D 4 HOH B 128 628 93 HOH HOH . D 4 HOH B 129 629 57 HOH HOH . D 4 HOH B 130 630 30 HOH HOH . D 4 HOH B 131 631 223 HOH HOH . D 4 HOH B 132 632 7 HOH HOH . D 4 HOH B 133 633 197 HOH HOH . D 4 HOH B 134 634 119 HOH HOH . D 4 HOH B 135 635 160 HOH HOH . D 4 HOH B 136 636 110 HOH HOH . D 4 HOH B 137 637 198 HOH HOH . D 4 HOH B 138 638 75 HOH HOH . D 4 HOH B 139 639 67 HOH HOH . D 4 HOH B 140 640 140 HOH HOH . D 4 HOH B 141 641 128 HOH HOH . D 4 HOH B 142 642 254 HOH HOH . D 4 HOH B 143 643 145 HOH HOH . D 4 HOH B 144 644 152 HOH HOH . D 4 HOH B 145 645 12 HOH HOH . D 4 HOH B 146 646 33 HOH HOH . D 4 HOH B 147 647 51 HOH HOH . D 4 HOH B 148 648 202 HOH HOH . D 4 HOH B 149 649 16 HOH HOH . D 4 HOH B 150 650 200 HOH HOH . D 4 HOH B 151 651 112 HOH HOH . D 4 HOH B 152 652 76 HOH HOH . D 4 HOH B 153 653 39 HOH HOH . D 4 HOH B 154 654 17 HOH HOH . D 4 HOH B 155 655 73 HOH HOH . D 4 HOH B 156 656 148 HOH HOH . D 4 HOH B 157 657 53 HOH HOH . D 4 HOH B 158 658 85 HOH HOH . D 4 HOH B 159 659 59 HOH HOH . D 4 HOH B 160 660 155 HOH HOH . D 4 HOH B 161 661 201 HOH HOH . D 4 HOH B 162 662 247 HOH HOH . D 4 HOH B 163 663 37 HOH HOH . D 4 HOH B 164 664 143 HOH HOH . D 4 HOH B 165 665 18 HOH HOH . D 4 HOH B 166 666 46 HOH HOH . D 4 HOH B 167 667 108 HOH HOH . D 4 HOH B 168 668 225 HOH HOH . D 4 HOH B 169 669 135 HOH HOH . D 4 HOH B 170 670 27 HOH HOH . D 4 HOH B 171 671 253 HOH HOH . D 4 HOH B 172 672 147 HOH HOH . D 4 HOH B 173 673 151 HOH HOH . D 4 HOH B 174 674 220 HOH HOH . D 4 HOH B 175 675 251 HOH HOH . D 4 HOH B 176 676 114 HOH HOH . D 4 HOH B 177 677 87 HOH HOH . D 4 HOH B 178 678 214 HOH HOH . D 4 HOH B 179 679 166 HOH HOH . D 4 HOH B 180 680 194 HOH HOH . D 4 HOH B 181 681 209 HOH HOH . D 4 HOH B 182 682 138 HOH HOH . D 4 HOH B 183 683 137 HOH HOH . D 4 HOH B 184 684 167 HOH HOH . D 4 HOH B 185 685 199 HOH HOH . D 4 HOH B 186 686 116 HOH HOH . D 4 HOH B 187 687 142 HOH HOH . D 4 HOH B 188 688 126 HOH HOH . D 4 HOH B 189 689 175 HOH HOH . D 4 HOH B 190 690 91 HOH HOH . D 4 HOH B 191 691 105 HOH HOH . D 4 HOH B 192 692 249 HOH HOH . D 4 HOH B 193 693 127 HOH HOH . D 4 HOH B 194 694 70 HOH HOH . D 4 HOH B 195 695 174 HOH HOH . D 4 HOH B 196 696 149 HOH HOH . D 4 HOH B 197 697 162 HOH HOH . D 4 HOH B 198 698 173 HOH HOH . D 4 HOH B 199 699 45 HOH HOH . D 4 HOH B 200 700 242 HOH HOH . D 4 HOH B 201 701 71 HOH HOH . D 4 HOH B 202 702 154 HOH HOH . D 4 HOH B 203 703 77 HOH HOH . D 4 HOH B 204 704 117 HOH HOH . D 4 HOH B 205 705 235 HOH HOH . D 4 HOH B 206 706 226 HOH HOH . D 4 HOH B 207 707 207 HOH HOH . D 4 HOH B 208 708 171 HOH HOH . D 4 HOH B 209 709 22 HOH HOH . D 4 HOH B 210 710 136 HOH HOH . D 4 HOH B 211 711 211 HOH HOH . D 4 HOH B 212 712 178 HOH HOH . D 4 HOH B 213 713 172 HOH HOH . D 4 HOH B 214 714 130 HOH HOH . D 4 HOH B 215 715 192 HOH HOH . D 4 HOH B 216 716 82 HOH HOH . D 4 HOH B 217 717 153 HOH HOH . D 4 HOH B 218 718 74 HOH HOH . D 4 HOH B 219 719 120 HOH HOH . D 4 HOH B 220 720 221 HOH HOH . D 4 HOH B 221 721 92 HOH HOH . D 4 HOH B 222 722 234 HOH HOH . D 4 HOH B 223 723 177 HOH HOH . D 4 HOH B 224 724 239 HOH HOH . D 4 HOH B 225 725 233 HOH HOH . D 4 HOH B 226 726 238 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C15 8GR . . . C 3 17.504 -36.04 -6.588 1 34.2 ? C15 8GR 402 B 1 HETATM 2 C C17 8GR . . . C 3 17.722 -35.68 -0.337 1 21.95 ? C17 8GR 402 B 1 HETATM 3 C C20 8GR . . . C 3 19.351 -38.046 1.776 1 25.66 ? C20 8GR 402 B 1 HETATM 4 C C22 8GR . . . C 3 20.62 -39.181 0.268 1 25.92 ? C22 8GR 402 B 1 HETATM 5 C C24 8GR . . . C 3 20.061 -38.15 -1.866 1 22.05 ? C24 8GR 402 B 1 HETATM 6 C C26 8GR . . . C 3 21.669 -39.971 -1.762 1 26.82 ? C26 8GR 402 B 1 HETATM 7 C C28 8GR . . . C 3 16.665 -34.624 -0.332 1 26.78 ? C28 8GR 402 B 1 HETATM 8 C C01 8GR . . . C 3 16.527 -32.06 -6.306 1 31.48 ? C01 8GR 402 B 1 HETATM 9 O O02 8GR . . . C 3 17.242 -33.196 -5.813 1 26.7 ? O02 8GR 402 B 1 HETATM 10 C C03 8GR . . . C 3 17.079 -33.523 -4.47 1 24.52 ? C03 8GR 402 B 1 HETATM 11 C C04 8GR . . . C 3 16.107 -32.824 -3.735 1 22.91 ? C04 8GR 402 B 1 HETATM 12 C C05 8GR . . . C 3 15.939 -33.139 -2.399 1 26.68 ? C05 8GR 402 B 1 HETATM 13 C C06 8GR . . . C 3 16.647 -34.093 -1.736 1 23.26 ? C06 8GR 402 B 1 HETATM 14 C C07 8GR . . . C 3 17.656 -34.836 -2.466 1 26.98 ? C07 8GR 402 B 1 HETATM 15 C C08 8GR . . . C 3 17.802 -34.534 -3.803 1 24.99 ? C08 8GR 402 B 1 HETATM 16 C C09 8GR . . . C 3 18.871 -35.268 -4.612 1 24.91 ? C09 8GR 402 B 1 HETATM 17 N N10 8GR . . . C 3 18.273 -36.479 -5.4 1 27.01 ? N10 8GR 402 B 1 HETATM 18 C C11 8GR . . . C 3 17.507 -37.32 -4.473 1 25.29 ? C11 8GR 402 B 1 HETATM 19 C C12 8GR . . . C 3 17.069 -38.597 -5.183 1 25.24 ? C12 8GR 402 B 1 HETATM 20 N N13 8GR . . . C 3 16.217 -38.26 -6.392 1 27.67 1 N13 8GR 402 B 1 HETATM 21 C C14 8GR . . . C 3 16.903 -37.247 -7.316 1 36.33 ? C14 8GR 402 B 1 HETATM 22 O O16 8GR . . . C 3 18.252 -35.754 -1.629 1 26.14 ? O16 8GR 402 B 1 HETATM 23 C C18 8GR . . . C 3 18.089 -36.437 0.728 1 21.79 ? C18 8GR 402 B 1 HETATM 24 C C19 8GR . . . C 3 19.078 -37.491 0.504 1 23.98 ? C19 8GR 402 B 1 HETATM 25 N N21 8GR . . . C 3 20.284 -39.062 1.635 1 25.94 ? N21 8GR 402 B 1 HETATM 26 C C23 8GR . . . C 3 19.873 -38.206 -0.462 1 28.61 ? C23 8GR 402 B 1 HETATM 27 C C25 8GR . . . C 3 20.936 -39.012 -2.502 1 27.52 ? C25 8GR 402 B 1 HETATM 28 C C27 8GR . . . C 3 21.52 -40.062 -0.388 1 27.24 ? C27 8GR 402 B 1 HETATM 29 O O29 8GR . . . C 3 16.013 -34.296 0.584 1 25.6 ? O29 8GR 402 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #