data_5VV7
#
_model_server_result.job_id            Bl3q5o3DxWDEAIGj8xMmbg 
_model_server_result.datetime_utc      '2024-11-23 02:38:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":505}' 
#
_entry.id    5VV7 
#
_exptl.entry_id    5VV7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VV7 
_cell.length_a            57.53 
_cell.length_b            106.7 
_cell.length_c            156.55 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc4 G ZN ZN . A ZN 505 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? 
metalc ? metalc5 G ZN ZN . A ZN 505 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5VV7 
_atom_sites.fract_transf_matrix[1][1]    0.017382 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009372 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 500 HEM HEM . 
D 3 H4B A 1 502 600 H4B BH4 . 
E 4 XH8 A 1 503 800 XH8 M56 . 
F 5 GOL A 1 504 880 GOL GOL . 
G 6 ZN A 1 505 900 ZN ZN . 
H 2 HEM B 1 501 500 HEM HEM . 
I 3 H4B B 1 502 600 H4B BH4 . 
J 4 XH8 B 1 503 800 XH8 M56 . 
K 5 GOL B 1 504 880 GOL GOL . 
L 7 HOH A 1 601 223 HOH HOH . 
L 7 HOH A 2 602 159 HOH HOH . 
L 7 HOH A 3 603 182 HOH HOH . 
L 7 HOH A 4 604 39 HOH HOH . 
L 7 HOH A 5 605 117 HOH HOH . 
L 7 HOH A 6 606 13 HOH HOH . 
L 7 HOH A 7 607 195 HOH HOH . 
L 7 HOH A 8 608 222 HOH HOH . 
L 7 HOH A 9 609 96 HOH HOH . 
L 7 HOH A 10 610 234 HOH HOH . 
L 7 HOH A 11 611 161 HOH HOH . 
L 7 HOH A 12 612 136 HOH HOH . 
L 7 HOH A 13 613 88 HOH HOH . 
L 7 HOH A 14 614 73 HOH HOH . 
L 7 HOH A 15 615 10 HOH HOH . 
L 7 HOH A 16 616 156 HOH HOH . 
L 7 HOH A 17 617 232 HOH HOH . 
L 7 HOH A 18 618 29 HOH HOH . 
L 7 HOH A 19 619 56 HOH HOH . 
L 7 HOH A 20 620 35 HOH HOH . 
L 7 HOH A 21 621 53 HOH HOH . 
L 7 HOH A 22 622 27 HOH HOH . 
L 7 HOH A 23 623 71 HOH HOH . 
L 7 HOH A 24 624 179 HOH HOH . 
L 7 HOH A 25 625 69 HOH HOH . 
L 7 HOH A 26 626 101 HOH HOH . 
L 7 HOH A 27 627 45 HOH HOH . 
L 7 HOH A 28 628 36 HOH HOH . 
L 7 HOH A 29 629 81 HOH HOH . 
L 7 HOH A 30 630 48 HOH HOH . 
L 7 HOH A 31 631 25 HOH HOH . 
L 7 HOH A 32 632 166 HOH HOH . 
L 7 HOH A 33 633 82 HOH HOH . 
L 7 HOH A 34 634 86 HOH HOH . 
L 7 HOH A 35 635 80 HOH HOH . 
L 7 HOH A 36 636 50 HOH HOH . 
L 7 HOH A 37 637 32 HOH HOH . 
L 7 HOH A 38 638 109 HOH HOH . 
L 7 HOH A 39 639 72 HOH HOH . 
L 7 HOH A 40 640 158 HOH HOH . 
L 7 HOH A 41 641 133 HOH HOH . 
L 7 HOH A 42 642 22 HOH HOH . 
L 7 HOH A 43 643 6 HOH HOH . 
L 7 HOH A 44 644 11 HOH HOH . 
L 7 HOH A 45 645 130 HOH HOH . 
L 7 HOH A 46 646 212 HOH HOH . 
L 7 HOH A 47 647 90 HOH HOH . 
L 7 HOH A 48 648 65 HOH HOH . 
L 7 HOH A 49 649 186 HOH HOH . 
L 7 HOH A 50 650 221 HOH HOH . 
L 7 HOH A 51 651 235 HOH HOH . 
L 7 HOH A 52 652 63 HOH HOH . 
L 7 HOH A 53 653 15 HOH HOH . 
L 7 HOH A 54 654 219 HOH HOH . 
L 7 HOH A 55 655 61 HOH HOH . 
L 7 HOH A 56 656 37 HOH HOH . 
L 7 HOH A 57 657 41 HOH HOH . 
L 7 HOH A 58 658 152 HOH HOH . 
L 7 HOH A 59 659 208 HOH HOH . 
L 7 HOH A 60 660 18 HOH HOH . 
L 7 HOH A 61 661 103 HOH HOH . 
L 7 HOH A 62 662 44 HOH HOH . 
L 7 HOH A 63 663 42 HOH HOH . 
L 7 HOH A 64 664 106 HOH HOH . 
L 7 HOH A 65 665 170 HOH HOH . 
L 7 HOH A 66 666 16 HOH HOH . 
L 7 HOH A 67 667 107 HOH HOH . 
L 7 HOH A 68 668 164 HOH HOH . 
L 7 HOH A 69 669 210 HOH HOH . 
L 7 HOH A 70 670 184 HOH HOH . 
L 7 HOH A 71 671 8 HOH HOH . 
L 7 HOH A 72 672 217 HOH HOH . 
L 7 HOH A 73 673 132 HOH HOH . 
L 7 HOH A 74 674 14 HOH HOH . 
L 7 HOH A 75 675 147 HOH HOH . 
L 7 HOH A 76 676 28 HOH HOH . 
L 7 HOH A 77 677 149 HOH HOH . 
L 7 HOH A 78 678 162 HOH HOH . 
L 7 HOH A 79 679 157 HOH HOH . 
L 7 HOH A 80 680 138 HOH HOH . 
L 7 HOH A 81 681 115 HOH HOH . 
L 7 HOH A 82 682 169 HOH HOH . 
L 7 HOH A 83 683 199 HOH HOH . 
L 7 HOH A 84 684 2 HOH HOH . 
L 7 HOH A 85 685 163 HOH HOH . 
L 7 HOH A 86 686 111 HOH HOH . 
L 7 HOH A 87 687 7 HOH HOH . 
L 7 HOH A 88 688 134 HOH HOH . 
L 7 HOH A 89 689 83 HOH HOH . 
L 7 HOH A 90 690 68 HOH HOH . 
L 7 HOH A 91 691 139 HOH HOH . 
L 7 HOH A 92 692 209 HOH HOH . 
L 7 HOH A 93 693 62 HOH HOH . 
L 7 HOH A 94 694 89 HOH HOH . 
L 7 HOH A 95 695 148 HOH HOH . 
L 7 HOH A 96 696 150 HOH HOH . 
L 7 HOH A 97 697 151 HOH HOH . 
L 7 HOH A 98 698 135 HOH HOH . 
L 7 HOH A 99 699 64 HOH HOH . 
L 7 HOH A 100 700 131 HOH HOH . 
L 7 HOH A 101 701 57 HOH HOH . 
L 7 HOH A 102 702 141 HOH HOH . 
L 7 HOH A 103 703 153 HOH HOH . 
L 7 HOH A 104 704 47 HOH HOH . 
L 7 HOH A 105 705 143 HOH HOH . 
L 7 HOH A 106 706 100 HOH HOH . 
L 7 HOH A 107 707 129 HOH HOH . 
L 7 HOH A 108 708 188 HOH HOH . 
L 7 HOH A 109 709 187 HOH HOH . 
L 7 HOH A 110 710 218 HOH HOH . 
L 7 HOH A 111 711 128 HOH HOH . 
L 7 HOH A 112 712 93 HOH HOH . 
L 7 HOH A 113 713 202 HOH HOH . 
L 7 HOH A 114 714 155 HOH HOH . 
L 7 HOH A 115 715 173 HOH HOH . 
L 7 HOH A 116 716 193 HOH HOH . 
L 7 HOH A 117 717 198 HOH HOH . 
L 7 HOH A 118 718 220 HOH HOH . 
L 7 HOH A 119 719 214 HOH HOH . 
L 7 HOH A 120 720 116 HOH HOH . 
L 7 HOH A 121 721 233 HOH HOH . 
L 7 HOH A 122 722 144 HOH HOH . 
L 7 HOH A 123 723 181 HOH HOH . 
L 7 HOH A 124 724 203 HOH HOH . 
L 7 HOH A 125 725 189 HOH HOH . 
L 7 HOH A 126 726 215 HOH HOH . 
L 7 HOH A 127 727 216 HOH HOH . 
L 7 HOH A 128 728 171 HOH HOH . 
L 7 HOH A 129 729 119 HOH HOH . 
L 7 HOH A 130 730 213 HOH HOH . 
L 7 HOH A 131 731 211 HOH HOH . 
M 7 HOH B 1 601 92 HOH HOH . 
M 7 HOH B 2 602 238 HOH HOH . 
M 7 HOH B 3 603 23 HOH HOH . 
M 7 HOH B 4 604 87 HOH HOH . 
M 7 HOH B 5 605 176 HOH HOH . 
M 7 HOH B 6 606 165 HOH HOH . 
M 7 HOH B 7 607 236 HOH HOH . 
M 7 HOH B 8 608 185 HOH HOH . 
M 7 HOH B 9 609 5 HOH HOH . 
M 7 HOH B 10 610 114 HOH HOH . 
M 7 HOH B 11 611 99 HOH HOH . 
M 7 HOH B 12 612 180 HOH HOH . 
M 7 HOH B 13 613 3 HOH HOH . 
M 7 HOH B 14 614 21 HOH HOH . 
M 7 HOH B 15 615 224 HOH HOH . 
M 7 HOH B 16 616 20 HOH HOH . 
M 7 HOH B 17 617 124 HOH HOH . 
M 7 HOH B 18 618 94 HOH HOH . 
M 7 HOH B 19 619 137 HOH HOH . 
M 7 HOH B 20 620 59 HOH HOH . 
M 7 HOH B 21 621 70 HOH HOH . 
M 7 HOH B 22 622 160 HOH HOH . 
M 7 HOH B 23 623 4 HOH HOH . 
M 7 HOH B 24 624 190 HOH HOH . 
M 7 HOH B 25 625 178 HOH HOH . 
M 7 HOH B 26 626 55 HOH HOH . 
M 7 HOH B 27 627 33 HOH HOH . 
M 7 HOH B 28 628 127 HOH HOH . 
M 7 HOH B 29 629 227 HOH HOH . 
M 7 HOH B 30 630 24 HOH HOH . 
M 7 HOH B 31 631 183 HOH HOH . 
M 7 HOH B 32 632 225 HOH HOH . 
M 7 HOH B 33 633 12 HOH HOH . 
M 7 HOH B 34 634 230 HOH HOH . 
M 7 HOH B 35 635 112 HOH HOH . 
M 7 HOH B 36 636 52 HOH HOH . 
M 7 HOH B 37 637 126 HOH HOH . 
M 7 HOH B 38 638 75 HOH HOH . 
M 7 HOH B 39 639 17 HOH HOH . 
M 7 HOH B 40 640 175 HOH HOH . 
M 7 HOH B 41 641 31 HOH HOH . 
M 7 HOH B 42 642 237 HOH HOH . 
M 7 HOH B 43 643 145 HOH HOH . 
M 7 HOH B 44 644 46 HOH HOH . 
M 7 HOH B 45 645 30 HOH HOH . 
M 7 HOH B 46 646 104 HOH HOH . 
M 7 HOH B 47 647 168 HOH HOH . 
M 7 HOH B 48 648 226 HOH HOH . 
M 7 HOH B 49 649 26 HOH HOH . 
M 7 HOH B 50 650 58 HOH HOH . 
M 7 HOH B 51 651 206 HOH HOH . 
M 7 HOH B 52 652 121 HOH HOH . 
M 7 HOH B 53 653 51 HOH HOH . 
M 7 HOH B 54 654 43 HOH HOH . 
M 7 HOH B 55 655 241 HOH HOH . 
M 7 HOH B 56 656 66 HOH HOH . 
M 7 HOH B 57 657 231 HOH HOH . 
M 7 HOH B 58 658 197 HOH HOH . 
M 7 HOH B 59 659 167 HOH HOH . 
M 7 HOH B 60 660 67 HOH HOH . 
M 7 HOH B 61 661 120 HOH HOH . 
M 7 HOH B 62 662 84 HOH HOH . 
M 7 HOH B 63 663 1 HOH HOH . 
M 7 HOH B 64 664 38 HOH HOH . 
M 7 HOH B 65 665 191 HOH HOH . 
M 7 HOH B 66 666 79 HOH HOH . 
M 7 HOH B 67 667 140 HOH HOH . 
M 7 HOH B 68 668 40 HOH HOH . 
M 7 HOH B 69 669 9 HOH HOH . 
M 7 HOH B 70 670 34 HOH HOH . 
M 7 HOH B 71 671 77 HOH HOH . 
M 7 HOH B 72 672 95 HOH HOH . 
M 7 HOH B 73 673 174 HOH HOH . 
M 7 HOH B 74 674 78 HOH HOH . 
M 7 HOH B 75 675 204 HOH HOH . 
M 7 HOH B 76 676 113 HOH HOH . 
M 7 HOH B 77 677 118 HOH HOH . 
M 7 HOH B 78 678 49 HOH HOH . 
M 7 HOH B 79 679 201 HOH HOH . 
M 7 HOH B 80 680 194 HOH HOH . 
M 7 HOH B 81 681 60 HOH HOH . 
M 7 HOH B 82 682 98 HOH HOH . 
M 7 HOH B 83 683 105 HOH HOH . 
M 7 HOH B 84 684 85 HOH HOH . 
M 7 HOH B 85 685 19 HOH HOH . 
M 7 HOH B 86 686 54 HOH HOH . 
M 7 HOH B 87 687 91 HOH HOH . 
M 7 HOH B 88 688 102 HOH HOH . 
M 7 HOH B 89 689 146 HOH HOH . 
M 7 HOH B 90 690 192 HOH HOH . 
M 7 HOH B 91 691 125 HOH HOH . 
M 7 HOH B 92 692 154 HOH HOH . 
M 7 HOH B 93 693 123 HOH HOH . 
M 7 HOH B 94 694 240 HOH HOH . 
M 7 HOH B 95 695 76 HOH HOH . 
M 7 HOH B 96 696 142 HOH HOH . 
M 7 HOH B 97 697 108 HOH HOH . 
M 7 HOH B 98 698 74 HOH HOH . 
M 7 HOH B 99 699 200 HOH HOH . 
M 7 HOH B 100 700 110 HOH HOH . 
M 7 HOH B 101 701 97 HOH HOH . 
M 7 HOH B 102 702 177 HOH HOH . 
M 7 HOH B 103 703 122 HOH HOH . 
M 7 HOH B 104 704 228 HOH HOH . 
M 7 HOH B 105 705 207 HOH HOH . 
M 7 HOH B 106 706 205 HOH HOH . 
M 7 HOH B 107 707 229 HOH HOH . 
M 7 HOH B 108 708 196 HOH HOH . 
M 7 HOH B 109 709 172 HOH HOH . 
M 7 HOH B 110 710 239 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               16.251 
_atom_site.Cartn_y               1.39 
_atom_site.Cartn_z               51.102 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        49.57 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           505 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              87 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#