data_5VV9 # _model_server_result.job_id UQwYRGMjojWtw0S8ZyDZuw _model_server_result.datetime_utc '2024-11-28 23:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":503}' # _entry.id 5VV9 # _exptl.entry_id 5VV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.4 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(2-{[(2-amino-4-methylquinolin-7-yl)methyl]amino}ethyl)benzonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VV9 _cell.length_a 57.245 _cell.length_b 106.127 _cell.length_c 155.832 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 K ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 K ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc4 B SG CYS 57 B CYS 96 1_555 K ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc5 B SG CYS 62 B CYS 101 1_555 K ZN ZN . B ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C20 H20 N4' _chem_comp.formula_weight 316.4 _chem_comp.id 9OG _chem_comp.mon_nstd_flag . _chem_comp.name 4-(2-{[(2-amino-4-methylquinolin-7-yl)methyl]amino}ethyl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C02 9OG sing 1 n n C03 C02 9OG doub 2 n y C03 C04 9OG sing 3 n y C02 N01 9OG sing 4 n y C11 C04 9OG sing 5 n n C04 C05 9OG doub 6 n y N01 C10 9OG doub 7 n y C05 C10 9OG sing 8 n y C05 C06 9OG sing 9 n y C10 C09 9OG sing 10 n y C06 C07 9OG doub 11 n y C09 C08 9OG doub 12 n y C07 C08 9OG sing 13 n y C08 C12 9OG sing 14 n n C12 N13 9OG sing 15 n n N13 C14 9OG sing 16 n n C14 C15 9OG sing 17 n n C15 C21 9OG sing 18 n n C26 C25 9OG doub 19 n y C26 C21 9OG sing 20 n y C25 C24 9OG sing 21 n y C21 C22 9OG doub 22 n y C24 C27 9OG sing 23 n n C24 C23 9OG doub 24 n y C22 C23 9OG sing 25 n y C27 N28 9OG trip 26 n n C14 H1 9OG sing 27 n n C14 H2 9OG sing 28 n n C12 H3 9OG sing 29 n n C12 H4 9OG sing 30 n n C11 H5 9OG sing 31 n n C11 H6 9OG sing 32 n n C11 H7 9OG sing 33 n n C15 H8 9OG sing 34 n n C15 H9 9OG sing 35 n n C23 H10 9OG sing 36 n n C22 H11 9OG sing 37 n n C25 H12 9OG sing 38 n n C26 H13 9OG sing 39 n n N13 H14 9OG sing 40 n n C07 H16 9OG sing 41 n n C09 H17 9OG sing 42 n n C06 H18 9OG sing 43 n n N02 H19 9OG sing 44 n n N02 H20 9OG sing 45 n n C03 H21 9OG sing 46 n n # _atom_sites.entry_id 5VV9 _atom_sites.fract_transf_matrix[1][1] 0.017469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009423 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 500 HEM HEM . D 3 H4B A 1 502 600 H4B BH4 . E 4 9OG A 1 503 800 9OG 2P7 . F 5 GOL A 1 504 880 GOL GOL . G 2 HEM B 1 501 500 HEM HEM . H 3 H4B B 1 502 600 H4B BH4 . I 4 9OG B 1 503 800 9OG 2P7 . J 5 GOL B 1 504 880 GOL GOL . K 6 ZN B 1 505 900 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 9OG . . . I 4 -0.425 2.433 63.071 1 77.46 ? C14 9OG 503 B 1 HETATM 2 C C12 9OG . . . I 4 -0.738 4.6 64.043 1 70.55 ? C12 9OG 503 B 1 HETATM 3 C C11 9OG . . . I 4 1.748 8.41 68.884 1 63.05 ? C11 9OG 503 B 1 HETATM 4 C C10 9OG . . . I 4 -0.362 7.928 65.791 1 76.2 ? C10 9OG 503 B 1 HETATM 5 C C15 9OG . . . I 4 0.041 2.232 61.638 1 77.94 ? C15 9OG 503 B 1 HETATM 6 N N28 9OG . . . I 4 0.405 -4.395 60.471 1 83.99 ? N28 9OG 503 B 1 HETATM 7 C C27 9OG . . . I 4 0.355 -3.254 60.663 1 89.57 ? C27 9OG 503 B 1 HETATM 8 C C24 9OG . . . I 4 0.27 -1.99 60.905 1 88.9 ? C24 9OG 503 B 1 HETATM 9 C C23 9OG . . . I 4 1.371 -1.306 61.422 1 71.76 ? C23 9OG 503 B 1 HETATM 10 C C22 9OG . . . I 4 1.287 0.055 61.649 1 79.26 ? C22 9OG 503 B 1 HETATM 11 C C25 9OG . . . I 4 -0.908 -1.302 60.609 1 91.29 ? C25 9OG 503 B 1 HETATM 12 C C26 9OG . . . I 4 -0.991 0.07 60.847 1 85.72 ? C26 9OG 503 B 1 HETATM 13 C C21 9OG . . . I 4 0.112 0.746 61.37 1 84.68 ? C21 9OG 503 B 1 HETATM 14 N N13 9OG . . . I 4 0.267 3.581 63.696 1 80.24 ? N13 9OG 503 B 1 HETATM 15 C C08 9OG . . . I 4 -0.267 5.631 65.05 1 77.29 ? C08 9OG 503 B 1 HETATM 16 C C07 9OG . . . I 4 0.582 5.334 66.116 1 68.65 ? C07 9OG 503 B 1 HETATM 17 C C09 9OG . . . I 4 -0.739 6.927 64.905 1 82.58 ? C09 9OG 503 B 1 HETATM 18 C C05 9OG . . . I 4 0.483 7.637 66.85 1 67.21 ? C05 9OG 503 B 1 HETATM 19 C C06 9OG . . . I 4 0.964 6.342 67.003 1 64.46 ? C06 9OG 503 B 1 HETATM 20 N N01 9OG . . . I 4 -0.841 9.18 65.61 1 78.22 ? N01 9OG 503 B 1 HETATM 21 C C02 9OG . . . I 4 -0.518 10.193 66.432 1 78.51 ? C02 9OG 503 B 1 HETATM 22 N N02 9OG . . . I 4 -1.03 11.427 66.202 1 72.66 ? N02 9OG 503 B 1 HETATM 23 C C03 9OG . . . I 4 0.332 9.942 67.505 1 82.67 ? C03 9OG 503 B 1 HETATM 24 C C04 9OG . . . I 4 0.833 8.66 67.723 1 70.05 ? C04 9OG 503 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 685 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #