data_5VVA
#
_model_server_result.job_id            IELZxnvMrA4Pk2TN2PkIvQ 
_model_server_result.datetime_utc      '2024-11-25 06:51:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":503}' 
#
_entry.id    5VVA 
#
_exptl.entry_id    5VVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.426 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(2-{[(2-amino-4-methylquinolin-7-yl)methyl]amino}ethyl)-2-methylbenzonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VVA 
_cell.length_a            57.27 
_cell.length_b            105.95 
_cell.length_c            155.41 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? 
metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 G ZN ZN . A ZN 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc4 G ZN ZN . A ZN 505 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc5 G ZN ZN . A ZN 505 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 H FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
#
_chem_comp.formula           'C21 H22 N4' 
_chem_comp.formula_weight    330.426 
_chem_comp.id                9OJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(2-{[(2-amino-4-methylquinolin-7-yl)methyl]amino}ethyl)-2-methylbenzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N17 C16 9OJ sing 1 n n 
C15 C16 9OJ doub 2 n y 
C15 C13 9OJ sing 3 n y 
C16 N18 9OJ sing 4 n y 
C14 C13 9OJ sing 5 n n 
C13 C12 9OJ doub 6 n y 
N18 C19 9OJ doub 7 n y 
C12 C19 9OJ sing 8 n y 
C12 C11 9OJ sing 9 n y 
C19 C20 9OJ sing 10 n y 
C11 C10 9OJ doub 11 n y 
C20 C09 9OJ doub 12 n y 
C10 C09 9OJ sing 13 n y 
C09 C08 9OJ sing 14 n n 
C08 N07 9OJ sing 15 n n 
N07 C06 9OJ sing 16 n n 
C06 C05 9OJ sing 17 n n 
C05 C04 9OJ sing 18 n n 
C21 C04 9OJ doub 19 n y 
C21 C22 9OJ sing 20 n y 
C04 C03 9OJ sing 21 n y 
C22 C23 9OJ doub 22 n y 
C03 C02 9OJ doub 23 n y 
C23 C02 9OJ sing 24 n y 
C23 C24 9OJ sing 25 n n 
C02 C01 9OJ sing 26 n n 
C24 N25 9OJ trip 27 n n 
C01 H1 9OJ sing 28 n n 
C01 H2 9OJ sing 29 n n 
C01 H3 9OJ sing 30 n n 
C22 H4 9OJ sing 31 n n 
C21 H5 9OJ sing 32 n n 
C03 H6 9OJ sing 33 n n 
C05 H7 9OJ sing 34 n n 
C05 H8 9OJ sing 35 n n 
C06 H9 9OJ sing 36 n n 
C06 H10 9OJ sing 37 n n 
N07 H11 9OJ sing 38 n n 
C08 H13 9OJ sing 39 n n 
C08 H14 9OJ sing 40 n n 
C20 H15 9OJ sing 41 n n 
C11 H16 9OJ sing 42 n n 
C10 H17 9OJ sing 43 n n 
N17 H18 9OJ sing 44 n n 
N17 H19 9OJ sing 45 n n 
C15 H20 9OJ sing 46 n n 
C14 H21 9OJ sing 47 n n 
C14 H22 9OJ sing 48 n n 
C14 H23 9OJ sing 49 n n 
#
_atom_sites.entry_id                     5VVA 
_atom_sites.fract_transf_matrix[1][1]    0.017461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009438 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006435 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 500 HEM HEM . 
D 3 H4B A 1 502 600 H4B BH4 . 
E 4 9OJ A 1 503 800 9OJ 3P8 . 
F 5 GOL A 1 504 880 GOL GOL . 
G 6 ZN A 1 505 900 ZN ZN . 
H 2 HEM B 1 501 500 HEM HEM . 
I 3 H4B B 1 502 600 H4B BH4 . 
J 4 9OJ B 1 503 800 9OJ 3P8 . 
K 5 GOL B 1 504 880 GOL GOL . 
L 7 HOH A 1 601 13 HOH HOH . 
L 7 HOH A 2 602 11 HOH HOH . 
L 7 HOH A 3 603 6 HOH HOH . 
L 7 HOH A 4 604 12 HOH HOH . 
L 7 HOH A 5 605 8 HOH HOH . 
L 7 HOH A 6 606 5 HOH HOH . 
L 7 HOH A 7 607 10 HOH HOH . 
L 7 HOH A 8 608 20 HOH HOH . 
L 7 HOH A 9 609 14 HOH HOH . 
L 7 HOH A 10 610 17 HOH HOH . 
L 7 HOH A 11 611 21 HOH HOH . 
L 7 HOH A 12 612 19 HOH HOH . 
L 7 HOH A 13 613 9 HOH HOH . 
L 7 HOH A 14 614 7 HOH HOH . 
M 7 HOH B 1 601 4 HOH HOH . 
M 7 HOH B 2 602 15 HOH HOH . 
M 7 HOH B 3 603 1 HOH HOH . 
M 7 HOH B 4 604 2 HOH HOH . 
M 7 HOH B 5 605 3 HOH HOH . 
M 7 HOH B 6 606 23 HOH HOH . 
M 7 HOH B 7 607 18 HOH HOH . 
M 7 HOH B 8 608 16 HOH HOH . 
M 7 HOH B 9 609 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N25 9OJ . . . J 4 0.536 -4.242 60.146 1 91.27 ? N25 9OJ 503 B 1 
HETATM 2 C C24 9OJ . . . J 4 0.485 -3.119 60.448 1 87.53 ? C24 9OJ 503 B 1 
HETATM 3 C C23 9OJ . . . J 4 0.301 -1.873 60.717 1 84.11 ? C23 9OJ 503 B 1 
HETATM 4 C C02 9OJ . . . J 4 -0.9 -1.285 60.419 1 90.7 ? C02 9OJ 503 B 1 
HETATM 5 C C01 9OJ . . . J 4 -2.044 -2.052 59.788 1 86.94 ? C01 9OJ 503 B 1 
HETATM 6 C C22 9OJ . . . J 4 1.332 -1.117 61.295 1 74.61 ? C22 9OJ 503 B 1 
HETATM 7 C C21 9OJ . . . J 4 1.137 0.227 61.582 1 77.7 ? C21 9OJ 503 B 1 
HETATM 8 C C04 9OJ . . . J 4 -0.094 0.819 61.284 1 83.76 ? C04 9OJ 503 B 1 
HETATM 9 C C03 9OJ . . . J 4 -1.102 0.055 60.699 1 93.15 ? C03 9OJ 503 B 1 
HETATM 10 C C05 9OJ . . . J 4 -0.417 2.28 61.572 1 77.55 ? C05 9OJ 503 B 1 
HETATM 11 C C06 9OJ . . . J 4 0.704 3.054 62.254 1 73.41 ? C06 9OJ 503 B 1 
HETATM 12 N N07 9OJ . . . J 4 0.391 3.438 63.651 1 68.48 ? N07 9OJ 503 B 1 
HETATM 13 C C08 9OJ . . . J 4 -0.597 4.528 63.742 1 51.17 ? C08 9OJ 503 B 1 
HETATM 14 C C09 9OJ . . . J 4 -0.196 5.608 64.743 1 69.51 ? C09 9OJ 503 B 1 
HETATM 15 C C20 9OJ . . . J 4 -0.672 6.914 64.606 1 75.84 ? C20 9OJ 503 B 1 
HETATM 16 C C19 9OJ . . . J 4 -0.317 7.917 65.517 1 66.79 ? C19 9OJ 503 B 1 
HETATM 17 C C12 9OJ . . . J 4 0.507 7.628 66.6 1 58.62 ? C12 9OJ 503 B 1 
HETATM 18 C C11 9OJ . . . J 4 0.986 6.335 66.753 1 62.21 ? C11 9OJ 503 B 1 
HETATM 19 C C10 9OJ . . . J 4 0.645 5.346 65.821 1 70.59 ? C10 9OJ 503 B 1 
HETATM 20 N N18 9OJ . . . J 4 -0.801 9.172 65.354 1 69.95 ? N18 9OJ 503 B 1 
HETATM 21 C C16 9OJ . . . J 4 -0.503 10.174 66.208 1 73.98 ? C16 9OJ 503 B 1 
HETATM 22 N N17 9OJ . . . J 4 -1.008 11.415 65.988 1 73.17 ? N17 9OJ 503 B 1 
HETATM 23 C C15 9OJ . . . J 4 0.323 9.921 67.298 1 67.66 ? C15 9OJ 503 B 1 
HETATM 24 C C13 9OJ . . . J 4 0.83 8.64 67.495 1 59.5 ? C13 9OJ 503 B 1 
HETATM 25 C C14 9OJ . . . J 4 1.724 8.383 68.672 1 58 ? C14 9OJ 503 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           25 
#