data_5VVN
#
_model_server_result.job_id            dRImn33M7QsjE1HL9BOahQ 
_model_server_result.datetime_utc      '2024-11-13 07:43:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vvn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":503}' 
#
_entry.id    5VVN 
#
_exptl.entry_id    5VVN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              302.373 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(2-{[(2-aminoquinolin-7-yl)methyl]amino}ethyl)benzonitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VVN 
_cell.length_a            58.093 
_cell.length_b            106.388 
_cell.length_c            156.04 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VVN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? 
metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc4 I ZN ZN . A ZN 507 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? 
metalc ? metalc5 I ZN ZN . A ZN 507 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
#
_chem_comp.formula           'C19 H18 N4' 
_chem_comp.formula_weight    302.373 
_chem_comp.id                P94 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(2-{[(2-aminoquinolin-7-yl)methyl]amino}ethyl)benzonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N28 C27 P94 trip 392 n n 
C27 C24 P94 sing 393 n n 
C25 C24 P94 doub 394 n y 
C25 C26 P94 sing 395 n y 
C24 C23 P94 sing 396 n y 
C26 C21 P94 doub 397 n y 
C23 C22 P94 doub 398 n y 
C21 C22 P94 sing 399 n y 
C21 C14 P94 sing 400 n n 
C14 C13 P94 sing 401 n n 
C13 N12 P94 sing 402 n n 
N12 C11 P94 sing 403 n n 
C11 C08 P94 sing 404 n n 
C09 C08 P94 doub 405 n y 
C09 C10 P94 sing 406 n y 
C08 C07 P94 sing 407 n y 
N01 C10 P94 doub 408 n y 
N01 C02 P94 sing 409 n y 
C10 C05 P94 sing 410 n y 
C07 C06 P94 doub 411 n y 
N02 C02 P94 sing 412 n n 
C02 C03 P94 doub 413 n y 
C05 C06 P94 sing 414 n y 
C05 C04 P94 doub 415 n y 
C03 C04 P94 sing 416 n y 
C22 H1 P94 sing 417 n n 
C23 H2 P94 sing 418 n n 
C25 H3 P94 sing 419 n n 
C26 H4 P94 sing 420 n n 
C14 H5 P94 sing 421 n n 
C14 H6 P94 sing 422 n n 
C13 H7 P94 sing 423 n n 
C13 H8 P94 sing 424 n n 
N12 H9 P94 sing 425 n n 
C11 H11 P94 sing 426 n n 
C11 H12 P94 sing 427 n n 
C09 H13 P94 sing 428 n n 
C07 H14 P94 sing 429 n n 
C06 H15 P94 sing 430 n n 
C04 H16 P94 sing 431 n n 
C03 H17 P94 sing 432 n n 
N02 H18 P94 sing 433 n n 
N02 H19 P94 sing 434 n n 
#
_atom_sites.entry_id                     5VVN 
_atom_sites.fract_transf_matrix[1][1]    0.017214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0094 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006409 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 500 HEM HEM . 
D 3 H4B A 1 502 600 H4B BH4 . 
E 4 P94 A 1 503 800 P94 P94 . 
F 5 ACT A 1 504 860 ACT ACT . 
G 5 ACT A 1 505 861 ACT ACT . 
H 6 GOL A 1 506 880 GOL GOL . 
I 7 ZN A 1 507 900 ZN ZN . 
J 2 HEM B 1 501 500 HEM HEM . 
K 3 H4B B 1 502 600 H4B BH4 . 
L 4 P94 B 1 503 800 P94 P94 . 
M 5 ACT B 1 504 860 ACT ACT . 
N 5 ACT B 1 505 861 ACT ACT . 
O 6 GOL B 1 506 880 GOL GOL . 
P 8 HOH A 1 601 16 HOH HOH . 
P 8 HOH A 2 602 49 HOH HOH . 
P 8 HOH A 3 603 61 HOH HOH . 
P 8 HOH A 4 604 48 HOH HOH . 
P 8 HOH A 5 605 24 HOH HOH . 
P 8 HOH A 6 606 56 HOH HOH . 
P 8 HOH A 7 607 66 HOH HOH . 
P 8 HOH A 8 608 13 HOH HOH . 
P 8 HOH A 9 609 35 HOH HOH . 
P 8 HOH A 10 610 9 HOH HOH . 
P 8 HOH A 11 611 72 HOH HOH . 
P 8 HOH A 12 612 42 HOH HOH . 
P 8 HOH A 13 613 19 HOH HOH . 
P 8 HOH A 14 614 28 HOH HOH . 
P 8 HOH A 15 615 29 HOH HOH . 
P 8 HOH A 16 616 73 HOH HOH . 
P 8 HOH A 17 617 34 HOH HOH . 
P 8 HOH A 18 618 47 HOH HOH . 
P 8 HOH A 19 619 82 HOH HOH . 
P 8 HOH A 20 620 11 HOH HOH . 
P 8 HOH A 21 621 36 HOH HOH . 
P 8 HOH A 22 622 78 HOH HOH . 
P 8 HOH A 23 623 31 HOH HOH . 
P 8 HOH A 24 624 67 HOH HOH . 
P 8 HOH A 25 625 77 HOH HOH . 
P 8 HOH A 26 626 38 HOH HOH . 
P 8 HOH A 27 627 71 HOH HOH . 
P 8 HOH A 28 628 33 HOH HOH . 
P 8 HOH A 29 629 5 HOH HOH . 
P 8 HOH A 30 630 70 HOH HOH . 
P 8 HOH A 31 631 37 HOH HOH . 
P 8 HOH A 32 632 46 HOH HOH . 
P 8 HOH A 33 633 64 HOH HOH . 
P 8 HOH A 34 634 14 HOH HOH . 
P 8 HOH A 35 635 4 HOH HOH . 
P 8 HOH A 36 636 63 HOH HOH . 
P 8 HOH A 37 637 76 HOH HOH . 
P 8 HOH A 38 638 80 HOH HOH . 
P 8 HOH A 39 639 2 HOH HOH . 
P 8 HOH A 40 640 17 HOH HOH . 
P 8 HOH A 41 641 65 HOH HOH . 
P 8 HOH A 42 642 62 HOH HOH . 
P 8 HOH A 43 643 81 HOH HOH . 
P 8 HOH A 44 644 74 HOH HOH . 
P 8 HOH A 45 645 22 HOH HOH . 
P 8 HOH A 46 646 75 HOH HOH . 
P 8 HOH A 47 647 20 HOH HOH . 
P 8 HOH A 48 648 18 HOH HOH . 
P 8 HOH A 49 649 23 HOH HOH . 
P 8 HOH A 50 650 79 HOH HOH . 
P 8 HOH A 51 651 39 HOH HOH . 
P 8 HOH A 52 652 43 HOH HOH . 
P 8 HOH A 53 653 45 HOH HOH . 
P 8 HOH A 54 654 55 HOH HOH . 
P 8 HOH A 55 655 68 HOH HOH . 
P 8 HOH A 56 656 3 HOH HOH . 
P 8 HOH A 57 657 40 HOH HOH . 
Q 8 HOH B 1 601 83 HOH HOH . 
Q 8 HOH B 2 602 50 HOH HOH . 
Q 8 HOH B 3 603 6 HOH HOH . 
Q 8 HOH B 4 604 91 HOH HOH . 
Q 8 HOH B 5 605 30 HOH HOH . 
Q 8 HOH B 6 606 69 HOH HOH . 
Q 8 HOH B 7 607 44 HOH HOH . 
Q 8 HOH B 8 608 7 HOH HOH . 
Q 8 HOH B 9 609 93 HOH HOH . 
Q 8 HOH B 10 610 88 HOH HOH . 
Q 8 HOH B 11 611 85 HOH HOH . 
Q 8 HOH B 12 612 32 HOH HOH . 
Q 8 HOH B 13 613 51 HOH HOH . 
Q 8 HOH B 14 614 41 HOH HOH . 
Q 8 HOH B 15 615 8 HOH HOH . 
Q 8 HOH B 16 616 21 HOH HOH . 
Q 8 HOH B 17 617 90 HOH HOH . 
Q 8 HOH B 18 618 54 HOH HOH . 
Q 8 HOH B 19 619 10 HOH HOH . 
Q 8 HOH B 20 620 84 HOH HOH . 
Q 8 HOH B 21 621 12 HOH HOH . 
Q 8 HOH B 22 622 1 HOH HOH . 
Q 8 HOH B 23 623 53 HOH HOH . 
Q 8 HOH B 24 624 26 HOH HOH . 
Q 8 HOH B 25 625 57 HOH HOH . 
Q 8 HOH B 26 626 15 HOH HOH . 
Q 8 HOH B 27 627 27 HOH HOH . 
Q 8 HOH B 28 628 86 HOH HOH . 
Q 8 HOH B 29 629 52 HOH HOH . 
Q 8 HOH B 30 630 89 HOH HOH . 
Q 8 HOH B 31 631 25 HOH HOH . 
Q 8 HOH B 32 632 59 HOH HOH . 
Q 8 HOH B 33 633 58 HOH HOH . 
Q 8 HOH B 34 634 92 HOH HOH . 
Q 8 HOH B 35 635 60 HOH HOH . 
Q 8 HOH B 36 636 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N28 P94 . . . E 4 18.924 17.225 39.394 1 92.67 ? N28 P94 503 A 1 
HETATM 2 C C27 P94 . . . E 4 17.925 16.698 39.139 1 87.83 ? C27 P94 503 A 1 
HETATM 3 C C21 P94 . . . E 4 14.434 14.923 38.106 1 69.3 ? C21 P94 503 A 1 
HETATM 4 C C22 P94 . . . E 4 15.55 14.142 38.398 1 71.73 ? C22 P94 503 A 1 
HETATM 5 C C23 P94 . . . E 4 16.749 14.743 38.759 1 73.6 ? C23 P94 503 A 1 
HETATM 6 C C24 P94 . . . E 4 16.82 16.128 38.82 1 79.7 ? C24 P94 503 A 1 
HETATM 7 C C25 P94 . . . E 4 15.708 16.908 38.517 1 77.23 ? C25 P94 503 A 1 
HETATM 8 C C26 P94 . . . E 4 14.507 16.31 38.16 1 73.49 ? C26 P94 503 A 1 
HETATM 9 C C14 P94 . . . E 4 13.142 14.259 37.702 1 59.42 ? C14 P94 503 A 1 
HETATM 10 C C13 P94 . . . E 4 12.902 14.526 36.221 1 50.54 ? C13 P94 503 A 1 
HETATM 11 N N12 P94 . . . E 4 11.925 13.55 35.71 1 53.86 ? N12 P94 503 A 1 
HETATM 12 C C11 P94 . . . E 4 11.33 14.121 34.498 1 50.37 ? C11 P94 503 A 1 
HETATM 13 C C10 P94 . . . E 4 8.392 12.507 32.733 1 47.59 ? C10 P94 503 A 1 
HETATM 14 C C09 P94 . . . E 4 9.158 13.357 33.516 1 49.42 ? C09 P94 503 A 1 
HETATM 15 C C08 P94 . . . E 4 10.523 13.156 33.657 1 50.64 ? C08 P94 503 A 1 
HETATM 16 C C07 P94 . . . E 4 11.121 12.076 33.013 1 51.31 ? C07 P94 503 A 1 
HETATM 17 C C06 P94 . . . E 4 10.363 11.224 32.217 1 48.7 ? C06 P94 503 A 1 
HETATM 18 C C05 P94 . . . E 4 8.997 11.435 32.08 1 45.35 ? C05 P94 503 A 1 
HETATM 19 C C04 P94 . . . E 4 8.231 10.593 31.283 1 37.83 ? C04 P94 503 A 1 
HETATM 20 C C03 P94 . . . E 4 6.869 10.838 31.171 1 34.91 ? C03 P94 503 A 1 
HETATM 21 C C02 P94 . . . E 4 6.297 11.911 31.852 1 42.09 ? C02 P94 503 A 1 
HETATM 22 N N02 P94 . . . E 4 4.972 12.153 31.754 1 41.51 ? N02 P94 503 A 1 
HETATM 23 N N01 P94 . . . E 4 7.062 12.723 32.615 1 45.66 ? N01 P94 503 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#