data_5VVN # _model_server_result.job_id QBmjwO-nLhUeCkeBtV3RFw _model_server_result.datetime_utc '2024-11-13 07:30:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":505}' # _entry.id 5VVN # _exptl.entry_id 5VVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VVN _cell.length_a 58.093 _cell.length_b 106.388 _cell.length_c 156.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 M N N ? 5 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 344 A VAL 383 1_555 A N CAS 345 A CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CAS 345 A CAS 384 1_555 A N MET 346 A MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C VAL 344 B VAL 383 1_555 B N CAS 345 B CAS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B C CAS 345 B CAS 384 1_555 B N MET 346 B MET 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A SG CYS 57 A CYS 96 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc2 A SG CYS 62 A CYS 101 1_555 I ZN ZN . A ZN 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc3 A SG CYS 147 A CYS 186 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc4 I ZN ZN . A ZN 507 1_555 B SG CYS 57 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc5 I ZN ZN . A ZN 507 1_555 B SG CYS 62 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc6 B SG CYS 147 B CYS 186 1_555 J FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 5VVN _atom_sites.fract_transf_matrix[1][1] 0.017214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006409 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 500 HEM HEM . D 3 H4B A 1 502 600 H4B BH4 . E 4 P94 A 1 503 800 P94 P94 . F 5 ACT A 1 504 860 ACT ACT . G 5 ACT A 1 505 861 ACT ACT . H 6 GOL A 1 506 880 GOL GOL . I 7 ZN A 1 507 900 ZN ZN . J 2 HEM B 1 501 500 HEM HEM . K 3 H4B B 1 502 600 H4B BH4 . L 4 P94 B 1 503 800 P94 P94 . M 5 ACT B 1 504 860 ACT ACT . N 5 ACT B 1 505 861 ACT ACT . O 6 GOL B 1 506 880 GOL GOL . P 8 HOH A 1 601 16 HOH HOH . P 8 HOH A 2 602 49 HOH HOH . P 8 HOH A 3 603 61 HOH HOH . P 8 HOH A 4 604 48 HOH HOH . P 8 HOH A 5 605 24 HOH HOH . P 8 HOH A 6 606 56 HOH HOH . P 8 HOH A 7 607 66 HOH HOH . P 8 HOH A 8 608 13 HOH HOH . P 8 HOH A 9 609 35 HOH HOH . P 8 HOH A 10 610 9 HOH HOH . P 8 HOH A 11 611 72 HOH HOH . P 8 HOH A 12 612 42 HOH HOH . P 8 HOH A 13 613 19 HOH HOH . P 8 HOH A 14 614 28 HOH HOH . P 8 HOH A 15 615 29 HOH HOH . P 8 HOH A 16 616 73 HOH HOH . P 8 HOH A 17 617 34 HOH HOH . P 8 HOH A 18 618 47 HOH HOH . P 8 HOH A 19 619 82 HOH HOH . P 8 HOH A 20 620 11 HOH HOH . P 8 HOH A 21 621 36 HOH HOH . P 8 HOH A 22 622 78 HOH HOH . P 8 HOH A 23 623 31 HOH HOH . P 8 HOH A 24 624 67 HOH HOH . P 8 HOH A 25 625 77 HOH HOH . P 8 HOH A 26 626 38 HOH HOH . P 8 HOH A 27 627 71 HOH HOH . P 8 HOH A 28 628 33 HOH HOH . P 8 HOH A 29 629 5 HOH HOH . P 8 HOH A 30 630 70 HOH HOH . P 8 HOH A 31 631 37 HOH HOH . P 8 HOH A 32 632 46 HOH HOH . P 8 HOH A 33 633 64 HOH HOH . P 8 HOH A 34 634 14 HOH HOH . P 8 HOH A 35 635 4 HOH HOH . P 8 HOH A 36 636 63 HOH HOH . P 8 HOH A 37 637 76 HOH HOH . P 8 HOH A 38 638 80 HOH HOH . P 8 HOH A 39 639 2 HOH HOH . P 8 HOH A 40 640 17 HOH HOH . P 8 HOH A 41 641 65 HOH HOH . P 8 HOH A 42 642 62 HOH HOH . P 8 HOH A 43 643 81 HOH HOH . P 8 HOH A 44 644 74 HOH HOH . P 8 HOH A 45 645 22 HOH HOH . P 8 HOH A 46 646 75 HOH HOH . P 8 HOH A 47 647 20 HOH HOH . P 8 HOH A 48 648 18 HOH HOH . P 8 HOH A 49 649 23 HOH HOH . P 8 HOH A 50 650 79 HOH HOH . P 8 HOH A 51 651 39 HOH HOH . P 8 HOH A 52 652 43 HOH HOH . P 8 HOH A 53 653 45 HOH HOH . P 8 HOH A 54 654 55 HOH HOH . P 8 HOH A 55 655 68 HOH HOH . P 8 HOH A 56 656 3 HOH HOH . P 8 HOH A 57 657 40 HOH HOH . Q 8 HOH B 1 601 83 HOH HOH . Q 8 HOH B 2 602 50 HOH HOH . Q 8 HOH B 3 603 6 HOH HOH . Q 8 HOH B 4 604 91 HOH HOH . Q 8 HOH B 5 605 30 HOH HOH . Q 8 HOH B 6 606 69 HOH HOH . Q 8 HOH B 7 607 44 HOH HOH . Q 8 HOH B 8 608 7 HOH HOH . Q 8 HOH B 9 609 93 HOH HOH . Q 8 HOH B 10 610 88 HOH HOH . Q 8 HOH B 11 611 85 HOH HOH . Q 8 HOH B 12 612 32 HOH HOH . Q 8 HOH B 13 613 51 HOH HOH . Q 8 HOH B 14 614 41 HOH HOH . Q 8 HOH B 15 615 8 HOH HOH . Q 8 HOH B 16 616 21 HOH HOH . Q 8 HOH B 17 617 90 HOH HOH . Q 8 HOH B 18 618 54 HOH HOH . Q 8 HOH B 19 619 10 HOH HOH . Q 8 HOH B 20 620 84 HOH HOH . Q 8 HOH B 21 621 12 HOH HOH . Q 8 HOH B 22 622 1 HOH HOH . Q 8 HOH B 23 623 53 HOH HOH . Q 8 HOH B 24 624 26 HOH HOH . Q 8 HOH B 25 625 57 HOH HOH . Q 8 HOH B 26 626 15 HOH HOH . Q 8 HOH B 27 627 27 HOH HOH . Q 8 HOH B 28 628 86 HOH HOH . Q 8 HOH B 29 629 52 HOH HOH . Q 8 HOH B 30 630 89 HOH HOH . Q 8 HOH B 31 631 25 HOH HOH . Q 8 HOH B 32 632 59 HOH HOH . Q 8 HOH B 33 633 58 HOH HOH . Q 8 HOH B 34 634 92 HOH HOH . Q 8 HOH B 35 635 60 HOH HOH . Q 8 HOH B 36 636 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . G 5 10.555 19.945 35.258 1 58.31 ? C ACT 505 A 1 HETATM 2 O O ACT . . . G 5 9.532 20.218 34.584 1 57.85 ? O ACT 505 A 1 HETATM 3 O OXT ACT . . . G 5 11.633 20.58 35.129 1 56.54 ? OXT ACT 505 A 1 HETATM 4 C CH3 ACT . . . G 5 10.503 18.784 36.215 1 56.49 ? CH3 ACT 505 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #