data_5VW8 # _model_server_result.job_id L1VLY6rNVsaS5r3hxC9rFQ _model_server_result.datetime_utc '2024-12-18 08:01:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5VW8 # _exptl.entry_id 5VW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VW8 _cell.length_a 58.867 _cell.length_b 58.867 _cell.length_c 185.036 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 A CYS 54 1_555 A SG CYS 139 A CYS 139 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 B MG MG . A MG 401 1_555 E O HOH . A HOH 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 B MG MG . A MG 401 1_555 E O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 B MG MG . A MG 401 1_555 E O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc4 B MG MG . A MG 401 1_555 E O HOH . A HOH 716 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc5 B MG MG . A MG 401 1_555 E O HOH . A HOH 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O HOH . A HOH 761 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VW8 _atom_sites.fract_transf_matrix[1][1] 0.016988 _atom_sites.fract_transf_matrix[1][2] 0.009808 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005404 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 NAP A 1 402 1 NAP NAP . D 4 FAD A 1 403 1 FAD FAD . E 5 HOH A 1 501 158 HOH HOH . E 5 HOH A 2 502 223 HOH HOH . E 5 HOH A 3 503 76 HOH HOH . E 5 HOH A 4 504 6 HOH HOH . E 5 HOH A 5 505 274 HOH HOH . E 5 HOH A 6 506 33 HOH HOH . E 5 HOH A 7 507 173 HOH HOH . E 5 HOH A 8 508 260 HOH HOH . E 5 HOH A 9 509 192 HOH HOH . E 5 HOH A 10 510 240 HOH HOH . E 5 HOH A 11 511 184 HOH HOH . E 5 HOH A 12 512 236 HOH HOH . E 5 HOH A 13 513 206 HOH HOH . E 5 HOH A 14 514 48 HOH HOH . E 5 HOH A 15 515 143 HOH HOH . E 5 HOH A 16 516 246 HOH HOH . E 5 HOH A 17 517 53 HOH HOH . E 5 HOH A 18 518 108 HOH HOH . E 5 HOH A 19 519 190 HOH HOH . E 5 HOH A 20 520 93 HOH HOH . E 5 HOH A 21 521 209 HOH HOH . E 5 HOH A 22 522 155 HOH HOH . E 5 HOH A 23 523 85 HOH HOH . E 5 HOH A 24 524 14 HOH HOH . E 5 HOH A 25 525 271 HOH HOH . E 5 HOH A 26 526 65 HOH HOH . E 5 HOH A 27 527 121 HOH HOH . E 5 HOH A 28 528 178 HOH HOH . E 5 HOH A 29 529 101 HOH HOH . E 5 HOH A 30 530 68 HOH HOH . E 5 HOH A 31 531 197 HOH HOH . E 5 HOH A 32 532 16 HOH HOH . E 5 HOH A 33 533 69 HOH HOH . E 5 HOH A 34 534 34 HOH HOH . E 5 HOH A 35 535 224 HOH HOH . E 5 HOH A 36 536 15 HOH HOH . E 5 HOH A 37 537 200 HOH HOH . E 5 HOH A 38 538 208 HOH HOH . E 5 HOH A 39 539 18 HOH HOH . E 5 HOH A 40 540 66 HOH HOH . E 5 HOH A 41 541 54 HOH HOH . E 5 HOH A 42 542 231 HOH HOH . E 5 HOH A 43 543 140 HOH HOH . E 5 HOH A 44 544 175 HOH HOH . E 5 HOH A 45 545 123 HOH HOH . E 5 HOH A 46 546 58 HOH HOH . E 5 HOH A 47 547 188 HOH HOH . E 5 HOH A 48 548 291 HOH HOH . E 5 HOH A 49 549 204 HOH HOH . E 5 HOH A 50 550 136 HOH HOH . E 5 HOH A 51 551 91 HOH HOH . E 5 HOH A 52 552 46 HOH HOH . E 5 HOH A 53 553 56 HOH HOH . E 5 HOH A 54 554 214 HOH HOH . E 5 HOH A 55 555 215 HOH HOH . E 5 HOH A 56 556 165 HOH HOH . E 5 HOH A 57 557 162 HOH HOH . E 5 HOH A 58 558 149 HOH HOH . E 5 HOH A 59 559 111 HOH HOH . E 5 HOH A 60 560 145 HOH HOH . E 5 HOH A 61 561 124 HOH HOH . E 5 HOH A 62 562 199 HOH HOH . E 5 HOH A 63 563 43 HOH HOH . E 5 HOH A 64 564 262 HOH HOH . E 5 HOH A 65 565 42 HOH HOH . E 5 HOH A 66 566 251 HOH HOH . E 5 HOH A 67 567 22 HOH HOH . E 5 HOH A 68 568 151 HOH HOH . E 5 HOH A 69 569 38 HOH HOH . E 5 HOH A 70 570 79 HOH HOH . E 5 HOH A 71 571 193 HOH HOH . E 5 HOH A 72 572 41 HOH HOH . E 5 HOH A 73 573 141 HOH HOH . E 5 HOH A 74 574 31 HOH HOH . E 5 HOH A 75 575 295 HOH HOH . E 5 HOH A 76 576 13 HOH HOH . E 5 HOH A 77 577 210 HOH HOH . E 5 HOH A 78 578 211 HOH HOH . E 5 HOH A 79 579 220 HOH HOH . E 5 HOH A 80 580 11 HOH HOH . E 5 HOH A 81 581 226 HOH HOH . E 5 HOH A 82 582 170 HOH HOH . E 5 HOH A 83 583 80 HOH HOH . E 5 HOH A 84 584 26 HOH HOH . E 5 HOH A 85 585 265 HOH HOH . E 5 HOH A 86 586 24 HOH HOH . E 5 HOH A 87 587 277 HOH HOH . E 5 HOH A 88 588 248 HOH HOH . E 5 HOH A 89 589 276 HOH HOH . E 5 HOH A 90 590 164 HOH HOH . E 5 HOH A 91 591 73 HOH HOH . E 5 HOH A 92 592 40 HOH HOH . E 5 HOH A 93 593 153 HOH HOH . E 5 HOH A 94 594 232 HOH HOH . E 5 HOH A 95 595 135 HOH HOH . E 5 HOH A 96 596 163 HOH HOH . E 5 HOH A 97 597 191 HOH HOH . E 5 HOH A 98 598 160 HOH HOH . E 5 HOH A 99 599 187 HOH HOH . E 5 HOH A 100 600 47 HOH HOH . E 5 HOH A 101 601 83 HOH HOH . E 5 HOH A 102 602 137 HOH HOH . E 5 HOH A 103 603 171 HOH HOH . E 5 HOH A 104 604 159 HOH HOH . E 5 HOH A 105 605 49 HOH HOH . E 5 HOH A 106 606 272 HOH HOH . E 5 HOH A 107 607 52 HOH HOH . E 5 HOH A 108 608 23 HOH HOH . E 5 HOH A 109 609 89 HOH HOH . E 5 HOH A 110 610 122 HOH HOH . E 5 HOH A 111 611 148 HOH HOH . E 5 HOH A 112 612 12 HOH HOH . E 5 HOH A 113 613 189 HOH HOH . E 5 HOH A 114 614 130 HOH HOH . E 5 HOH A 115 615 64 HOH HOH . E 5 HOH A 116 616 61 HOH HOH . E 5 HOH A 117 617 10 HOH HOH . E 5 HOH A 118 618 71 HOH HOH . E 5 HOH A 119 619 142 HOH HOH . E 5 HOH A 120 620 172 HOH HOH . E 5 HOH A 121 621 19 HOH HOH . E 5 HOH A 122 622 125 HOH HOH . E 5 HOH A 123 623 37 HOH HOH . E 5 HOH A 124 624 3 HOH HOH . E 5 HOH A 125 625 144 HOH HOH . E 5 HOH A 126 626 4 HOH HOH . E 5 HOH A 127 627 27 HOH HOH . E 5 HOH A 128 628 126 HOH HOH . E 5 HOH A 129 629 285 HOH HOH . E 5 HOH A 130 630 255 HOH HOH . E 5 HOH A 131 631 305 HOH HOH . E 5 HOH A 132 632 147 HOH HOH . E 5 HOH A 133 633 81 HOH HOH . E 5 HOH A 134 634 110 HOH HOH . E 5 HOH A 135 635 63 HOH HOH . E 5 HOH A 136 636 1 HOH HOH . E 5 HOH A 137 637 32 HOH HOH . E 5 HOH A 138 638 261 HOH HOH . E 5 HOH A 139 639 302 HOH HOH . E 5 HOH A 140 640 195 HOH HOH . E 5 HOH A 141 641 249 HOH HOH . E 5 HOH A 142 642 98 HOH HOH . E 5 HOH A 143 643 253 HOH HOH . E 5 HOH A 144 644 131 HOH HOH . E 5 HOH A 145 645 9 HOH HOH . E 5 HOH A 146 646 20 HOH HOH . E 5 HOH A 147 647 185 HOH HOH . E 5 HOH A 148 648 25 HOH HOH . E 5 HOH A 149 649 252 HOH HOH . E 5 HOH A 150 650 177 HOH HOH . E 5 HOH A 151 651 28 HOH HOH . E 5 HOH A 152 652 287 HOH HOH . E 5 HOH A 153 653 301 HOH HOH . E 5 HOH A 154 654 216 HOH HOH . E 5 HOH A 155 655 7 HOH HOH . E 5 HOH A 156 656 181 HOH HOH . E 5 HOH A 157 657 168 HOH HOH . E 5 HOH A 158 658 299 HOH HOH . E 5 HOH A 159 659 35 HOH HOH . E 5 HOH A 160 660 51 HOH HOH . E 5 HOH A 161 661 60 HOH HOH . E 5 HOH A 162 662 50 HOH HOH . E 5 HOH A 163 663 103 HOH HOH . E 5 HOH A 164 664 45 HOH HOH . E 5 HOH A 165 665 150 HOH HOH . E 5 HOH A 166 666 113 HOH HOH . E 5 HOH A 167 667 77 HOH HOH . E 5 HOH A 168 668 92 HOH HOH . E 5 HOH A 169 669 179 HOH HOH . E 5 HOH A 170 670 21 HOH HOH . E 5 HOH A 171 671 127 HOH HOH . E 5 HOH A 172 672 203 HOH HOH . E 5 HOH A 173 673 129 HOH HOH . E 5 HOH A 174 674 196 HOH HOH . E 5 HOH A 175 675 238 HOH HOH . E 5 HOH A 176 676 176 HOH HOH . E 5 HOH A 177 677 2 HOH HOH . E 5 HOH A 178 678 259 HOH HOH . E 5 HOH A 179 679 55 HOH HOH . E 5 HOH A 180 680 39 HOH HOH . E 5 HOH A 181 681 75 HOH HOH . E 5 HOH A 182 682 225 HOH HOH . E 5 HOH A 183 683 269 HOH HOH . E 5 HOH A 184 684 278 HOH HOH . E 5 HOH A 185 685 241 HOH HOH . E 5 HOH A 186 686 247 HOH HOH . E 5 HOH A 187 687 233 HOH HOH . E 5 HOH A 188 688 183 HOH HOH . E 5 HOH A 189 689 174 HOH HOH . E 5 HOH A 190 690 74 HOH HOH . E 5 HOH A 191 691 157 HOH HOH . E 5 HOH A 192 692 152 HOH HOH . E 5 HOH A 193 693 227 HOH HOH . E 5 HOH A 194 694 256 HOH HOH . E 5 HOH A 195 695 229 HOH HOH . E 5 HOH A 196 696 86 HOH HOH . E 5 HOH A 197 697 207 HOH HOH . E 5 HOH A 198 698 154 HOH HOH . E 5 HOH A 199 699 250 HOH HOH . E 5 HOH A 200 700 228 HOH HOH . E 5 HOH A 201 701 29 HOH HOH . E 5 HOH A 202 702 221 HOH HOH . E 5 HOH A 203 703 182 HOH HOH . E 5 HOH A 204 704 59 HOH HOH . E 5 HOH A 205 705 284 HOH HOH . E 5 HOH A 206 706 194 HOH HOH . E 5 HOH A 207 707 94 HOH HOH . E 5 HOH A 208 708 306 HOH HOH . E 5 HOH A 209 709 5 HOH HOH . E 5 HOH A 210 710 270 HOH HOH . E 5 HOH A 211 711 219 HOH HOH . E 5 HOH A 212 712 202 HOH HOH . E 5 HOH A 213 713 298 HOH HOH . E 5 HOH A 214 714 239 HOH HOH . E 5 HOH A 215 715 293 HOH HOH . E 5 HOH A 216 716 117 HOH HOH . E 5 HOH A 217 717 78 HOH HOH . E 5 HOH A 218 718 268 HOH HOH . E 5 HOH A 219 719 244 HOH HOH . E 5 HOH A 220 720 8 HOH HOH . E 5 HOH A 221 721 212 HOH HOH . E 5 HOH A 222 722 273 HOH HOH . E 5 HOH A 223 723 62 HOH HOH . E 5 HOH A 224 724 57 HOH HOH . E 5 HOH A 225 725 235 HOH HOH . E 5 HOH A 226 726 275 HOH HOH . E 5 HOH A 227 727 100 HOH HOH . E 5 HOH A 228 728 286 HOH HOH . E 5 HOH A 229 729 245 HOH HOH . E 5 HOH A 230 730 17 HOH HOH . E 5 HOH A 231 731 201 HOH HOH . E 5 HOH A 232 732 296 HOH HOH . E 5 HOH A 233 733 95 HOH HOH . E 5 HOH A 234 734 72 HOH HOH . E 5 HOH A 235 735 288 HOH HOH . E 5 HOH A 236 736 234 HOH HOH . E 5 HOH A 237 737 134 HOH HOH . E 5 HOH A 238 738 44 HOH HOH . E 5 HOH A 239 739 128 HOH HOH . E 5 HOH A 240 740 242 HOH HOH . E 5 HOH A 241 741 167 HOH HOH . E 5 HOH A 242 742 97 HOH HOH . E 5 HOH A 243 743 303 HOH HOH . E 5 HOH A 244 744 112 HOH HOH . E 5 HOH A 245 745 266 HOH HOH . E 5 HOH A 246 746 205 HOH HOH . E 5 HOH A 247 747 116 HOH HOH . E 5 HOH A 248 748 169 HOH HOH . E 5 HOH A 249 749 222 HOH HOH . E 5 HOH A 250 750 267 HOH HOH . E 5 HOH A 251 751 180 HOH HOH . E 5 HOH A 252 752 186 HOH HOH . E 5 HOH A 253 753 282 HOH HOH . E 5 HOH A 254 754 218 HOH HOH . E 5 HOH A 255 755 115 HOH HOH . E 5 HOH A 256 756 133 HOH HOH . E 5 HOH A 257 757 70 HOH HOH . E 5 HOH A 258 758 283 HOH HOH . E 5 HOH A 259 759 213 HOH HOH . E 5 HOH A 260 760 307 HOH HOH . E 5 HOH A 261 761 166 HOH HOH . E 5 HOH A 262 762 300 HOH HOH . E 5 HOH A 263 763 138 HOH HOH . E 5 HOH A 264 764 294 HOH HOH . E 5 HOH A 265 765 230 HOH HOH . E 5 HOH A 266 766 310 HOH HOH . E 5 HOH A 267 767 264 HOH HOH . E 5 HOH A 268 768 258 HOH HOH . E 5 HOH A 269 769 132 HOH HOH . E 5 HOH A 270 770 308 HOH HOH . E 5 HOH A 271 771 161 HOH HOH . E 5 HOH A 272 772 257 HOH HOH . E 5 HOH A 273 773 139 HOH HOH . E 5 HOH A 274 774 279 HOH HOH . E 5 HOH A 275 775 198 HOH HOH . E 5 HOH A 276 776 292 HOH HOH . E 5 HOH A 277 777 243 HOH HOH . E 5 HOH A 278 778 118 HOH HOH . E 5 HOH A 279 779 254 HOH HOH . E 5 HOH A 280 780 156 HOH HOH . E 5 HOH A 281 781 281 HOH HOH . E 5 HOH A 282 782 263 HOH HOH . E 5 HOH A 283 783 90 HOH HOH . E 5 HOH A 284 784 217 HOH HOH . E 5 HOH A 285 785 304 HOH HOH . E 5 HOH A 286 786 309 HOH HOH . E 5 HOH A 287 787 106 HOH HOH . E 5 HOH A 288 788 87 HOH HOH . E 5 HOH A 289 789 280 HOH HOH . E 5 HOH A 290 790 146 HOH HOH . E 5 HOH A 291 791 290 HOH HOH . E 5 HOH A 292 792 67 HOH HOH . E 5 HOH A 293 793 119 HOH HOH . E 5 HOH A 294 794 237 HOH HOH . E 5 HOH A 295 795 289 HOH HOH . E 5 HOH A 296 796 297 HOH HOH . E 5 HOH A 297 797 114 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 36.654 _atom_site.Cartn_y -35.086 _atom_site.Cartn_z 5.656 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 44.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #