data_5VWC # _model_server_result.job_id -Zres0Be2gWVziTuQeXAvg _model_server_result.datetime_utc '2024-11-05 01:29:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vwc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 5VWC # _exptl.entry_id 5VWC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VWC _cell.length_a 35.49 _cell.length_b 41.693 _cell.length_c 51.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VWC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 5VWC _atom_sites.fract_transf_matrix[1][1] 0.028177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 901 1 EDO EDO . C 2 EDO A 1 902 2 EDO EDO . D 2 EDO A 1 903 3 EDO EDO . E 3 HOH A 1 1001 23 HOH HOH . E 3 HOH A 2 1002 15 HOH HOH . E 3 HOH A 3 1003 39 HOH HOH . E 3 HOH A 4 1004 44 HOH HOH . E 3 HOH A 5 1005 43 HOH HOH . E 3 HOH A 6 1006 41 HOH HOH . E 3 HOH A 7 1007 51 HOH HOH . E 3 HOH A 8 1008 46 HOH HOH . E 3 HOH A 9 1009 5 HOH HOH . E 3 HOH A 10 1010 37 HOH HOH . E 3 HOH A 11 1011 11 HOH HOH . E 3 HOH A 12 1012 18 HOH HOH . E 3 HOH A 13 1013 17 HOH HOH . E 3 HOH A 14 1014 42 HOH HOH . E 3 HOH A 15 1015 3 HOH HOH . E 3 HOH A 16 1016 40 HOH HOH . E 3 HOH A 17 1017 1 HOH HOH . E 3 HOH A 18 1018 48 HOH HOH . E 3 HOH A 19 1019 10 HOH HOH . E 3 HOH A 20 1020 8 HOH HOH . E 3 HOH A 21 1021 12 HOH HOH . E 3 HOH A 22 1022 30 HOH HOH . E 3 HOH A 23 1023 14 HOH HOH . E 3 HOH A 24 1024 2 HOH HOH . E 3 HOH A 25 1025 28 HOH HOH . E 3 HOH A 26 1026 9 HOH HOH . E 3 HOH A 27 1027 22 HOH HOH . E 3 HOH A 28 1028 20 HOH HOH . E 3 HOH A 29 1029 21 HOH HOH . E 3 HOH A 30 1030 31 HOH HOH . E 3 HOH A 31 1031 49 HOH HOH . E 3 HOH A 32 1032 7 HOH HOH . E 3 HOH A 33 1033 4 HOH HOH . E 3 HOH A 34 1034 35 HOH HOH . E 3 HOH A 35 1035 24 HOH HOH . E 3 HOH A 36 1036 52 HOH HOH . E 3 HOH A 37 1037 50 HOH HOH . E 3 HOH A 38 1038 34 HOH HOH . E 3 HOH A 39 1039 45 HOH HOH . E 3 HOH A 40 1040 25 HOH HOH . E 3 HOH A 41 1041 33 HOH HOH . E 3 HOH A 42 1042 13 HOH HOH . E 3 HOH A 43 1043 19 HOH HOH . E 3 HOH A 44 1044 26 HOH HOH . E 3 HOH A 45 1045 32 HOH HOH . E 3 HOH A 46 1046 47 HOH HOH . E 3 HOH A 47 1047 29 HOH HOH . E 3 HOH A 48 1048 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 1.815 -20.498 2.684 1 29.29 ? C1 EDO 903 A 1 HETATM 2 O O1 EDO . . . D 2 2.672 -20.515 3.839 1 38.86 ? O1 EDO 903 A 1 HETATM 3 C C2 EDO . . . D 2 1.228 -19.107 2.559 1 26.58 ? C2 EDO 903 A 1 HETATM 4 O O2 EDO . . . D 2 2.26 -18.134 2.564 1 26.79 ? O2 EDO 903 A 1 HETATM 5 H H11 EDO . . . D 2 2.388 -20.745 1.788 1 35.17 ? H11 EDO 903 A 1 HETATM 6 H H12 EDO . . . D 2 1.016 -21.233 2.799 1 35.17 ? H12 EDO 903 A 1 HETATM 7 H HO1 EDO . . . D 2 3.059 -21.395 3.939 1 46.65 ? HO1 EDO 903 A 1 HETATM 8 H H21 EDO . . . D 2 0.658 -19.032 1.63 1 31.93 ? H21 EDO 903 A 1 HETATM 9 H H22 EDO . . . D 2 0.545 -18.921 3.39 1 31.93 ? H22 EDO 903 A 1 HETATM 10 H HO2 EDO . . . D 2 1.872 -17.252 2.484 1 32.18 ? HO2 EDO 903 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #