data_5VWT
#
_model_server_result.job_id            dZnA-r0ldiqEHFKlrz2V-g 
_model_server_result.datetime_utc      '2024-11-05 00:01:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vwt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":601}' 
#
_entry.id    5VWT 
#
_exptl.entry_id    5VWT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VWT 
_cell.length_a            218.292 
_cell.length_b            218.292 
_cell.length_c            319.216 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VWT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 J N N 
? 2 P N N 
? 2 V N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     5VWT 
_atom_sites.fract_transf_matrix[1][1]    0.004581 
_atom_sites.fract_transf_matrix[1][2]    0.002645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 601 601 FAD FAD . 
F 3 SO4 A 1 602 602 SO4 SO4 . 
G 3 SO4 A 1 603 603 SO4 SO4 . 
H 4 NDP A 1 604 605 NDP NDP . 
I 3 SO4 A 1 605 602 SO4 SO4 . 
J 2 FAD B 1 601 601 FAD FAD . 
K 3 SO4 B 1 602 602 SO4 SO4 . 
L 4 NDP B 1 603 604 NDP NDP . 
M 3 SO4 B 1 604 605 SO4 SO4 . 
N 3 SO4 B 1 605 607 SO4 SO4 . 
O 3 SO4 B 1 606 603 SO4 SO4 . 
P 2 FAD C 1 601 601 FAD FAD . 
Q 4 NDP C 1 602 605 NDP NDP . 
R 3 SO4 C 1 603 602 SO4 SO4 . 
S 3 SO4 C 1 604 603 SO4 SO4 . 
T 3 SO4 C 1 605 608 SO4 SO4 . 
U 3 SO4 C 1 606 609 SO4 SO4 . 
V 2 FAD D 1 601 601 FAD FAD . 
W 3 SO4 D 1 602 602 SO4 SO4 . 
X 3 SO4 D 1 603 603 SO4 SO4 . 
Y 4 NDP D 1 604 605 NDP NDP . 
Z 3 SO4 D 1 605 610 SO4 SO4 . 
AA 5 HOH A 1 701 708 HOH HOH . 
AA 5 HOH A 2 702 706 HOH HOH . 
AA 5 HOH A 3 703 705 HOH HOH . 
AA 5 HOH A 4 704 703 HOH HOH . 
AA 5 HOH A 5 705 701 HOH HOH . 
AA 5 HOH A 6 706 707 HOH HOH . 
AA 5 HOH A 7 707 704 HOH HOH . 
BA 5 HOH B 1 701 701 HOH HOH . 
BA 5 HOH B 2 702 703 HOH HOH . 
BA 5 HOH B 3 703 704 HOH HOH . 
BA 5 HOH B 4 704 702 HOH HOH . 
CA 5 HOH C 1 701 701 HOH HOH . 
CA 5 HOH C 2 702 703 HOH HOH . 
DA 5 HOH D 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . J 2 28.358 106.185 220.263 1 28.72 ? PA FAD 601 B 1 
HETATM 2 O O1A FAD . . . J 2 29.127 107.241 219.557 1 38.66 ? O1A FAD 601 B 1 
HETATM 3 O O2A FAD . . . J 2 26.851 106.146 219.976 1 30.42 ? O2A FAD 601 B 1 
HETATM 4 O O5B FAD . . . J 2 28.494 106.252 221.825 1 38.22 ? O5B FAD 601 B 1 
HETATM 5 C C5B FAD . . . J 2 29.544 107.017 222.455 1 47.58 ? C5B FAD 601 B 1 
HETATM 6 C C4B FAD . . . J 2 29.023 107.528 223.778 1 49.74 ? C4B FAD 601 B 1 
HETATM 7 O O4B FAD . . . J 2 30.127 107.923 224.634 1 42.25 ? O4B FAD 601 B 1 
HETATM 8 C C3B FAD . . . J 2 28.123 108.755 223.66 1 46.75 ? C3B FAD 601 B 1 
HETATM 9 O O3B FAD . . . J 2 27.098 108.693 224.646 1 47.72 ? O3B FAD 601 B 1 
HETATM 10 C C2B FAD . . . J 2 29.11 109.893 223.907 1 43.38 ? C2B FAD 601 B 1 
HETATM 11 O O2B FAD . . . J 2 28.472 111.099 224.304 1 47.17 ? O2B FAD 601 B 1 
HETATM 12 C C1B FAD . . . J 2 29.947 109.268 225.023 1 42.76 ? C1B FAD 601 B 1 
HETATM 13 N N9A FAD . . . J 2 31.245 109.911 225.24 1 38.99 ? N9A FAD 601 B 1 
HETATM 14 C C8A FAD . . . J 2 32.179 110.232 224.288 1 34.95 ? C8A FAD 601 B 1 
HETATM 15 N N7A FAD . . . J 2 33.239 110.848 224.762 1 38.97 ? N7A FAD 601 B 1 
HETATM 16 C C5A FAD . . . J 2 32.982 110.945 226.122 1 32.45 ? C5A FAD 601 B 1 
HETATM 17 C C6A FAD . . . J 2 33.72 111.492 227.19 1 36.62 ? C6A FAD 601 B 1 
HETATM 18 N N6A FAD . . . J 2 34.914 112.073 227.048 1 42.62 ? N6A FAD 601 B 1 
HETATM 19 N N1A FAD . . . J 2 33.185 111.412 228.429 1 32.26 ? N1A FAD 601 B 1 
HETATM 20 C C2A FAD . . . J 2 31.991 110.83 228.578 1 25.72 ? C2A FAD 601 B 1 
HETATM 21 N N3A FAD . . . J 2 31.2 110.29 227.646 1 27.95 ? N3A FAD 601 B 1 
HETATM 22 C C4A FAD . . . J 2 31.757 110.375 226.431 1 32.23 ? C4A FAD 601 B 1 
HETATM 23 N N1 FAD . . . J 2 23.538 101.949 213.229 1 29.63 ? N1 FAD 601 B 1 
HETATM 24 C C2 FAD . . . J 2 22.673 101.04 212.677 1 35.7 ? C2 FAD 601 B 1 
HETATM 25 O O2 FAD . . . J 2 22.404 99.965 213.231 1 38.27 ? O2 FAD 601 B 1 
HETATM 26 N N3 FAD . . . J 2 22.088 101.303 211.453 1 36.21 ? N3 FAD 601 B 1 
HETATM 27 C C4 FAD . . . J 2 22.276 102.438 210.693 1 35.61 ? C4 FAD 601 B 1 
HETATM 28 O O4 FAD . . . J 2 21.684 102.581 209.62 1 40.94 ? O4 FAD 601 B 1 
HETATM 29 C C4X FAD . . . J 2 23.186 103.394 211.284 1 28.27 ? C4X FAD 601 B 1 
HETATM 30 N N5 FAD . . . J 2 23.407 104.5 210.63 1 29.55 ? N5 FAD 601 B 1 
HETATM 31 C C5X FAD . . . J 2 24.256 105.438 211.2 1 28.94 ? C5X FAD 601 B 1 
HETATM 32 C C6 FAD . . . J 2 24.499 106.644 210.531 1 23.07 ? C6 FAD 601 B 1 
HETATM 33 C C7 FAD . . . J 2 25.355 107.6 211.075 1 28.69 ? C7 FAD 601 B 1 
HETATM 34 C C7M FAD . . . J 2 25.604 108.879 210.327 1 35.84 ? C7M FAD 601 B 1 
HETATM 35 C C8 FAD . . . J 2 25.978 107.357 212.313 1 33.61 ? C8 FAD 601 B 1 
HETATM 36 C C8M FAD . . . J 2 26.922 108.36 212.929 1 29.03 ? C8M FAD 601 B 1 
HETATM 37 C C9 FAD . . . J 2 25.735 106.162 212.976 1 35.08 ? C9 FAD 601 B 1 
HETATM 38 C C9A FAD . . . J 2 24.88 105.215 212.432 1 31.74 ? C9A FAD 601 B 1 
HETATM 39 N N10 FAD . . . J 2 24.595 104.033 213.131 1 29.27 ? N10 FAD 601 B 1 
HETATM 40 C C10 FAD . . . J 2 23.778 103.061 212.56 1 25.39 ? C10 FAD 601 B 1 
HETATM 41 C C1' FAD . . . J 2 25.379 103.753 214.331 1 35.37 ? C1' FAD 601 B 1 
HETATM 42 C C2' FAD . . . J 2 24.649 103.295 215.565 1 42.26 ? C2' FAD 601 B 1 
HETATM 43 O O2' FAD . . . J 2 24.127 104.47 216.183 1 40.82 ? O2' FAD 601 B 1 
HETATM 44 C C3' FAD . . . J 2 25.717 102.66 216.465 1 45.23 ? C3' FAD 601 B 1 
HETATM 45 O O3' FAD . . . J 2 25.493 101.332 216.92 1 45.18 ? O3' FAD 601 B 1 
HETATM 46 C C4' FAD . . . J 2 26.144 103.525 217.632 1 43.45 ? C4' FAD 601 B 1 
HETATM 47 O O4' FAD . . . J 2 26.193 104.856 217.118 1 42.22 ? O4' FAD 601 B 1 
HETATM 48 C C5' FAD . . . J 2 27.483 103.049 218.145 1 43.52 ? C5' FAD 601 B 1 
HETATM 49 O O5' FAD . . . J 2 27.431 102.952 219.581 1 38.25 ? O5' FAD 601 B 1 
HETATM 50 P P FAD . . . J 2 28.668 103.337 220.449 1 45.13 ? P FAD 601 B 1 
HETATM 51 O O1P FAD . . . J 2 29.9 102.515 220.058 1 50.41 ? O1P FAD 601 B 1 
HETATM 52 O O2P FAD . . . J 2 28.297 103.391 221.89 1 42.44 ? O2P FAD 601 B 1 
HETATM 53 O O3P FAD . . . J 2 28.964 104.767 219.902 1 43.76 ? O3P FAD 601 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           53 
#