data_5VWT
#
_model_server_result.job_id            8LLYN-E-FV9kbKSPCa3Zmw 
_model_server_result.datetime_utc      '2024-11-05 00:03:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vwt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":602}' 
#
_entry.id    5VWT 
#
_exptl.entry_id    5VWT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VWT 
_cell.length_a            218.292 
_cell.length_b            218.292 
_cell.length_c            319.216 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VWT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 Q N N 
? 4 Y N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 328 n n 
PA O2A NDP sing 329 n n 
PA O5B NDP sing 330 n n 
PA O3 NDP sing 331 n n 
O2A HOA2 NDP sing 332 n n 
O5B C5B NDP sing 333 n n 
C5B C4B NDP sing 334 n n 
C5B H51A NDP sing 335 n n 
C5B H52A NDP sing 336 n n 
C4B O4B NDP sing 337 n n 
C4B C3B NDP sing 338 n n 
C4B H4B NDP sing 339 n n 
O4B C1B NDP sing 340 n n 
C3B O3B NDP sing 341 n n 
C3B C2B NDP sing 342 n n 
C3B H3B NDP sing 343 n n 
O3B HO3A NDP sing 344 n n 
C2B O2B NDP sing 345 n n 
C2B C1B NDP sing 346 n n 
C2B H2B NDP sing 347 n n 
O2B P2B NDP sing 348 n n 
C1B N9A NDP sing 349 n n 
C1B H1B NDP sing 350 n n 
N9A C8A NDP sing 351 n y 
N9A C4A NDP sing 352 n y 
C8A N7A NDP doub 353 n y 
C8A H8A NDP sing 354 n n 
N7A C5A NDP sing 355 n y 
C5A C6A NDP sing 356 n y 
C5A C4A NDP doub 357 n y 
C6A N6A NDP sing 358 n n 
C6A N1A NDP doub 359 n y 
N6A H61A NDP sing 360 n n 
N6A H62A NDP sing 361 n n 
N1A C2A NDP sing 362 n y 
C2A N3A NDP doub 363 n y 
C2A H2A NDP sing 364 n n 
N3A C4A NDP sing 365 n y 
O3 PN NDP sing 366 n n 
PN O1N NDP doub 367 n n 
PN O2N NDP sing 368 n n 
PN O5D NDP sing 369 n n 
O2N H21N NDP sing 370 n n 
O5D C5D NDP sing 371 n n 
C5D C4D NDP sing 372 n n 
C5D H51N NDP sing 373 n n 
C5D H52N NDP sing 374 n n 
C4D O4D NDP sing 375 n n 
C4D C3D NDP sing 376 n n 
C4D H4D NDP sing 377 n n 
O4D C1D NDP sing 378 n n 
C3D O3D NDP sing 379 n n 
C3D C2D NDP sing 380 n n 
C3D H3D NDP sing 381 n n 
O3D HO3N NDP sing 382 n n 
C2D O2D NDP sing 383 n n 
C2D C1D NDP sing 384 n n 
C2D H2D NDP sing 385 n n 
O2D HO2N NDP sing 386 n n 
C1D N1N NDP sing 387 n n 
C1D H1D NDP sing 388 n n 
N1N C2N NDP sing 389 n n 
N1N C6N NDP sing 390 n n 
C2N C3N NDP doub 391 n n 
C2N H2N NDP sing 392 n n 
C3N C7N NDP sing 393 n n 
C3N C4N NDP sing 394 n n 
C7N O7N NDP doub 395 n n 
C7N N7N NDP sing 396 n n 
N7N H71N NDP sing 397 n n 
N7N H72N NDP sing 398 n n 
C4N C5N NDP sing 399 n n 
C4N H41N NDP sing 400 n n 
C4N H42N NDP sing 401 n n 
C5N C6N NDP doub 402 n n 
C5N H5N NDP sing 403 n n 
C6N H6N NDP sing 404 n n 
P2B O1X NDP doub 405 n n 
P2B O2X NDP sing 406 n n 
P2B O3X NDP sing 407 n n 
O2X HOP2 NDP sing 408 n n 
O3X HOP3 NDP sing 409 n n 
#
_atom_sites.entry_id                     5VWT 
_atom_sites.fract_transf_matrix[1][1]    0.004581 
_atom_sites.fract_transf_matrix[1][2]    0.002645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 601 601 FAD FAD . 
F 3 SO4 A 1 602 602 SO4 SO4 . 
G 3 SO4 A 1 603 603 SO4 SO4 . 
H 4 NDP A 1 604 605 NDP NDP . 
I 3 SO4 A 1 605 602 SO4 SO4 . 
J 2 FAD B 1 601 601 FAD FAD . 
K 3 SO4 B 1 602 602 SO4 SO4 . 
L 4 NDP B 1 603 604 NDP NDP . 
M 3 SO4 B 1 604 605 SO4 SO4 . 
N 3 SO4 B 1 605 607 SO4 SO4 . 
O 3 SO4 B 1 606 603 SO4 SO4 . 
P 2 FAD C 1 601 601 FAD FAD . 
Q 4 NDP C 1 602 605 NDP NDP . 
R 3 SO4 C 1 603 602 SO4 SO4 . 
S 3 SO4 C 1 604 603 SO4 SO4 . 
T 3 SO4 C 1 605 608 SO4 SO4 . 
U 3 SO4 C 1 606 609 SO4 SO4 . 
V 2 FAD D 1 601 601 FAD FAD . 
W 3 SO4 D 1 602 602 SO4 SO4 . 
X 3 SO4 D 1 603 603 SO4 SO4 . 
Y 4 NDP D 1 604 605 NDP NDP . 
Z 3 SO4 D 1 605 610 SO4 SO4 . 
AA 5 HOH A 1 701 708 HOH HOH . 
AA 5 HOH A 2 702 706 HOH HOH . 
AA 5 HOH A 3 703 705 HOH HOH . 
AA 5 HOH A 4 704 703 HOH HOH . 
AA 5 HOH A 5 705 701 HOH HOH . 
AA 5 HOH A 6 706 707 HOH HOH . 
AA 5 HOH A 7 707 704 HOH HOH . 
BA 5 HOH B 1 701 701 HOH HOH . 
BA 5 HOH B 2 702 703 HOH HOH . 
BA 5 HOH B 3 703 704 HOH HOH . 
BA 5 HOH B 4 704 702 HOH HOH . 
CA 5 HOH C 1 701 701 HOH HOH . 
CA 5 HOH C 2 702 703 HOH HOH . 
DA 5 HOH D 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . Q 4 32.933 76.522 155.522 0.7 59.03 ? PA NDP 602 C 1 
HETATM 2 O O1A NDP . . . Q 4 34.178 77.359 155.391 0.7 47.29 ? O1A NDP 602 C 1 
HETATM 3 O O2A NDP . . . Q 4 32.701 75.735 156.768 0.7 59.63 ? O2A NDP 602 C 1 
HETATM 4 O O5B NDP . . . Q 4 31.594 77.439 155.21 0.7 58.98 ? O5B NDP 602 C 1 
HETATM 5 C C5B NDP . . . Q 4 32.111 78.696 154.906 0.7 61.53 ? C5B NDP 602 C 1 
HETATM 6 C C4B NDP . . . Q 4 30.977 79.683 154.752 0.7 59.11 ? C4B NDP 602 C 1 
HETATM 7 O O4B NDP . . . Q 4 29.729 79 154.758 0.7 50.21 ? O4B NDP 602 C 1 
HETATM 8 C C3B NDP . . . Q 4 31.04 80.651 155.969 0.7 64.08 ? C3B NDP 602 C 1 
HETATM 9 O O3B NDP . . . Q 4 30.604 81.905 155.582 0.7 66.66 ? O3B NDP 602 C 1 
HETATM 10 C C2B NDP . . . Q 4 29.967 80.047 156.885 0.7 61.51 ? C2B NDP 602 C 1 
HETATM 11 O O2B NDP . . . Q 4 29.419 80.926 157.745 0.7 64.52 ? O2B NDP 602 C 1 
HETATM 12 C C1B NDP . . . Q 4 28.952 79.651 155.761 0.7 52.21 ? C1B NDP 602 C 1 
HETATM 13 N N9A NDP . . . Q 4 27.916 78.739 156.253 0.7 54.07 ? N9A NDP 602 C 1 
HETATM 14 C C8A NDP . . . Q 4 28.042 77.434 156.784 0.7 50.22 ? C8A NDP 602 C 1 
HETATM 15 N N7A NDP . . . Q 4 26.853 76.902 157.149 0.7 48.52 ? N7A NDP 602 C 1 
HETATM 16 C C5A NDP . . . Q 4 25.933 77.906 156.836 0.7 43.23 ? C5A NDP 602 C 1 
HETATM 17 C C6A NDP . . . Q 4 24.574 77.97 156.973 0.7 40.27 ? C6A NDP 602 C 1 
HETATM 18 N N6A NDP . . . Q 4 23.896 76.91 157.501 0.7 43.73 ? N6A NDP 602 C 1 
HETATM 19 N N1A NDP . . . Q 4 23.87 79.065 156.592 0.7 45.01 ? N1A NDP 602 C 1 
HETATM 20 C C2A NDP . . . Q 4 24.618 80.097 156.073 0.7 43.94 ? C2A NDP 602 C 1 
HETATM 21 N N3A NDP . . . Q 4 25.923 80.2 155.886 0.7 38.98 ? N3A NDP 602 C 1 
HETATM 22 C C4A NDP . . . Q 4 26.572 79.055 156.284 0.7 46.7 ? C4A NDP 602 C 1 
HETATM 23 O O3 NDP . . . Q 4 33.066 75.326 154.335 0.7 62.98 ? O3 NDP 602 C 1 
HETATM 24 P PN NDP . . . Q 4 31.71 74.445 154.158 0.7 68.02 ? PN NDP 602 C 1 
HETATM 25 O O1N NDP . . . Q 4 31.743 73.597 152.905 0.7 64.24 ? O1N NDP 602 C 1 
HETATM 26 O O2N NDP . . . Q 4 31.354 73.864 155.469 0.7 72.02 ? O2N NDP 602 C 1 
HETATM 27 O O5D NDP . . . Q 4 30.229 75.453 153.815 0.7 52.31 ? O5D NDP 602 C 1 
HETATM 28 P P2B NDP . . . Q 4 29.553 80.42 159.564 0.7 72.91 ? P2B NDP 602 C 1 
HETATM 29 O O1X NDP . . . Q 4 31.007 80.022 159.6 0.7 69.91 ? O1X NDP 602 C 1 
HETATM 30 O O2X NDP . . . Q 4 28.524 79.297 159.76 0.7 69.12 ? O2X NDP 602 C 1 
HETATM 31 O O3X NDP . . . Q 4 29.197 81.781 160.086 0.7 62.96 ? O3X NDP 602 C 1 
#
_model_server_stats.io_time_ms              35 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#