data_5VWT
#
_model_server_result.job_id            81HeDp0FAufnXeIlyxUQ1A 
_model_server_result.datetime_utc      '2024-11-05 00:04:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vwt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":604}' 
#
_entry.id    5VWT 
#
_exptl.entry_id    5VWT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VWT 
_cell.length_a            218.292 
_cell.length_b            218.292 
_cell.length_c            319.216 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VWT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 L N N 
? 4 Q N N 
? 4 Y N N 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 328 n n 
PA O2A NDP sing 329 n n 
PA O5B NDP sing 330 n n 
PA O3 NDP sing 331 n n 
O2A HOA2 NDP sing 332 n n 
O5B C5B NDP sing 333 n n 
C5B C4B NDP sing 334 n n 
C5B H51A NDP sing 335 n n 
C5B H52A NDP sing 336 n n 
C4B O4B NDP sing 337 n n 
C4B C3B NDP sing 338 n n 
C4B H4B NDP sing 339 n n 
O4B C1B NDP sing 340 n n 
C3B O3B NDP sing 341 n n 
C3B C2B NDP sing 342 n n 
C3B H3B NDP sing 343 n n 
O3B HO3A NDP sing 344 n n 
C2B O2B NDP sing 345 n n 
C2B C1B NDP sing 346 n n 
C2B H2B NDP sing 347 n n 
O2B P2B NDP sing 348 n n 
C1B N9A NDP sing 349 n n 
C1B H1B NDP sing 350 n n 
N9A C8A NDP sing 351 n y 
N9A C4A NDP sing 352 n y 
C8A N7A NDP doub 353 n y 
C8A H8A NDP sing 354 n n 
N7A C5A NDP sing 355 n y 
C5A C6A NDP sing 356 n y 
C5A C4A NDP doub 357 n y 
C6A N6A NDP sing 358 n n 
C6A N1A NDP doub 359 n y 
N6A H61A NDP sing 360 n n 
N6A H62A NDP sing 361 n n 
N1A C2A NDP sing 362 n y 
C2A N3A NDP doub 363 n y 
C2A H2A NDP sing 364 n n 
N3A C4A NDP sing 365 n y 
O3 PN NDP sing 366 n n 
PN O1N NDP doub 367 n n 
PN O2N NDP sing 368 n n 
PN O5D NDP sing 369 n n 
O2N H21N NDP sing 370 n n 
O5D C5D NDP sing 371 n n 
C5D C4D NDP sing 372 n n 
C5D H51N NDP sing 373 n n 
C5D H52N NDP sing 374 n n 
C4D O4D NDP sing 375 n n 
C4D C3D NDP sing 376 n n 
C4D H4D NDP sing 377 n n 
O4D C1D NDP sing 378 n n 
C3D O3D NDP sing 379 n n 
C3D C2D NDP sing 380 n n 
C3D H3D NDP sing 381 n n 
O3D HO3N NDP sing 382 n n 
C2D O2D NDP sing 383 n n 
C2D C1D NDP sing 384 n n 
C2D H2D NDP sing 385 n n 
O2D HO2N NDP sing 386 n n 
C1D N1N NDP sing 387 n n 
C1D H1D NDP sing 388 n n 
N1N C2N NDP sing 389 n n 
N1N C6N NDP sing 390 n n 
C2N C3N NDP doub 391 n n 
C2N H2N NDP sing 392 n n 
C3N C7N NDP sing 393 n n 
C3N C4N NDP sing 394 n n 
C7N O7N NDP doub 395 n n 
C7N N7N NDP sing 396 n n 
N7N H71N NDP sing 397 n n 
N7N H72N NDP sing 398 n n 
C4N C5N NDP sing 399 n n 
C4N H41N NDP sing 400 n n 
C4N H42N NDP sing 401 n n 
C5N C6N NDP doub 402 n n 
C5N H5N NDP sing 403 n n 
C6N H6N NDP sing 404 n n 
P2B O1X NDP doub 405 n n 
P2B O2X NDP sing 406 n n 
P2B O3X NDP sing 407 n n 
O2X HOP2 NDP sing 408 n n 
O3X HOP3 NDP sing 409 n n 
#
_atom_sites.entry_id                     5VWT 
_atom_sites.fract_transf_matrix[1][1]    0.004581 
_atom_sites.fract_transf_matrix[1][2]    0.002645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00529 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003133 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 601 601 FAD FAD . 
F 3 SO4 A 1 602 602 SO4 SO4 . 
G 3 SO4 A 1 603 603 SO4 SO4 . 
H 4 NDP A 1 604 605 NDP NDP . 
I 3 SO4 A 1 605 602 SO4 SO4 . 
J 2 FAD B 1 601 601 FAD FAD . 
K 3 SO4 B 1 602 602 SO4 SO4 . 
L 4 NDP B 1 603 604 NDP NDP . 
M 3 SO4 B 1 604 605 SO4 SO4 . 
N 3 SO4 B 1 605 607 SO4 SO4 . 
O 3 SO4 B 1 606 603 SO4 SO4 . 
P 2 FAD C 1 601 601 FAD FAD . 
Q 4 NDP C 1 602 605 NDP NDP . 
R 3 SO4 C 1 603 602 SO4 SO4 . 
S 3 SO4 C 1 604 603 SO4 SO4 . 
T 3 SO4 C 1 605 608 SO4 SO4 . 
U 3 SO4 C 1 606 609 SO4 SO4 . 
V 2 FAD D 1 601 601 FAD FAD . 
W 3 SO4 D 1 602 602 SO4 SO4 . 
X 3 SO4 D 1 603 603 SO4 SO4 . 
Y 4 NDP D 1 604 605 NDP NDP . 
Z 3 SO4 D 1 605 610 SO4 SO4 . 
AA 5 HOH A 1 701 708 HOH HOH . 
AA 5 HOH A 2 702 706 HOH HOH . 
AA 5 HOH A 3 703 705 HOH HOH . 
AA 5 HOH A 4 704 703 HOH HOH . 
AA 5 HOH A 5 705 701 HOH HOH . 
AA 5 HOH A 6 706 707 HOH HOH . 
AA 5 HOH A 7 707 704 HOH HOH . 
BA 5 HOH B 1 701 701 HOH HOH . 
BA 5 HOH B 2 702 703 HOH HOH . 
BA 5 HOH B 3 703 704 HOH HOH . 
BA 5 HOH B 4 704 702 HOH HOH . 
CA 5 HOH C 1 701 701 HOH HOH . 
CA 5 HOH C 2 702 703 HOH HOH . 
DA 5 HOH D 1 701 701 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . Y 4 45.237 69.822 215.109 0.7 69.32 ? PA NDP 604 D 1 
HETATM 2 O O1A NDP . . . Y 4 44.495 69.242 213.938 0.7 71.52 ? O1A NDP 604 D 1 
HETATM 3 O O2A NDP . . . Y 4 45.406 71.299 215.262 0.7 55.85 ? O2A NDP 604 D 1 
HETATM 4 O O5B NDP . . . Y 4 46.708 69.088 215.251 0.7 68.47 ? O5B NDP 604 D 1 
HETATM 5 C C5B NDP . . . Y 4 47.346 69.823 216.246 0.7 68.17 ? C5B NDP 604 D 1 
HETATM 6 C C4B NDP . . . Y 4 48.818 69.513 216.215 0.7 68.44 ? C4B NDP 604 D 1 
HETATM 7 O O4B NDP . . . Y 4 48.992 68.137 215.99 0.7 65.54 ? O4B NDP 604 D 1 
HETATM 8 C C3B NDP . . . Y 4 49.447 70.31 215.041 0.7 72.7 ? C3B NDP 604 D 1 
HETATM 9 O O3B NDP . . . Y 4 50.686 70.816 215.453 0.7 72.59 ? O3B NDP 604 D 1 
HETATM 10 C C2B NDP . . . Y 4 49.659 69.204 213.967 0.7 74.02 ? C2B NDP 604 D 1 
HETATM 11 O O2B NDP . . . Y 4 50.719 69.42 213.178 0.7 84.2 ? O2B NDP 604 D 1 
HETATM 12 C C1B NDP . . . Y 4 49.955 68.024 214.956 0.7 64.86 ? C1B NDP 604 D 1 
HETATM 13 N N9A NDP . . . Y 4 49.864 66.652 214.413 0.7 60.22 ? N9A NDP 604 D 1 
HETATM 14 C C8A NDP . . . Y 4 48.746 65.935 213.9 0.7 56.52 ? C8A NDP 604 D 1 
HETATM 15 N N7A NDP . . . Y 4 49.056 64.66 213.525 0.7 52.54 ? N7A NDP 604 D 1 
HETATM 16 C C5A NDP . . . Y 4 50.433 64.563 213.821 0.7 53.29 ? C5A NDP 604 D 1 
HETATM 17 C C6A NDP . . . Y 4 51.352 63.524 213.677 0.7 49.58 ? C6A NDP 604 D 1 
HETATM 18 N N6A NDP . . . Y 4 50.967 62.334 213.16 0.7 47.72 ? N6A NDP 604 D 1 
HETATM 19 N N1A NDP . . . Y 4 52.647 63.661 214.045 0.7 51.63 ? N1A NDP 604 D 1 
HETATM 20 C C2A NDP . . . Y 4 52.971 64.896 214.567 0.7 49.87 ? C2A NDP 604 D 1 
HETATM 21 N N3A NDP . . . Y 4 52.23 65.98 214.771 0.7 42.26 ? N3A NDP 604 D 1 
HETATM 22 C C4A NDP . . . Y 4 50.938 65.787 214.379 0.7 51.33 ? C4A NDP 604 D 1 
HETATM 23 O O3 NDP . . . Y 4 44.332 69.467 216.47 0.7 76.07 ? O3 NDP 604 D 1 
HETATM 24 P PN NDP . . . Y 4 44.09 67.874 216.629 0.7 74.66 ? PN NDP 604 D 1 
HETATM 25 O O1N NDP . . . Y 4 42.7 67.488 215.622 0.7 69.56 ? O1N NDP 604 D 1 
HETATM 26 O O2N NDP . . . Y 4 45.158 66.959 216.066 0.7 67.46 ? O2N NDP 604 D 1 
HETATM 27 O O5D NDP . . . Y 4 43.478 67.648 217.955 0.7 80.27 ? O5D NDP 604 D 1 
HETATM 28 P P2B NDP . . . Y 4 50.373 69.244 211.36 0.7 90.75 ? P2B NDP 604 D 1 
HETATM 29 O O1X NDP . . . Y 4 51.769 69.04 210.761 0.7 87.51 ? O1X NDP 604 D 1 
HETATM 30 O O2X NDP . . . Y 4 49.724 70.582 211.173 0.7 79.37 ? O2X NDP 604 D 1 
HETATM 31 O O3X NDP . . . Y 4 49.474 68.035 211.425 0.7 95.21 ? O3X NDP 604 D 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#