data_5VWU
#
_model_server_result.job_id            BnJ9TvzxMKVcvHO-zpSk7A 
_model_server_result.datetime_utc      '2024-11-05 00:40:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vwu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    5VWU 
#
_exptl.entry_id    5VWU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              665.441 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5VWU 
_cell.length_a            218.247 
_cell.length_b            218.247 
_cell.length_c            318.004 
_cell.Z_PDB               48 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VWU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 J N N 
#
_chem_comp.formula           'C21 H29 N7 O14 P2' 
_chem_comp.formula_weight    665.441 
_chem_comp.id                NAI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     NADH 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAI doub 328 n n 
PA O2A NAI sing 329 n n 
PA O5B NAI sing 330 n n 
PA O3 NAI sing 331 n n 
O2A HOA2 NAI sing 332 n n 
O5B C5B NAI sing 333 n n 
C5B C4B NAI sing 334 n n 
C5B H51A NAI sing 335 n n 
C5B H52A NAI sing 336 n n 
C4B O4B NAI sing 337 n n 
C4B C3B NAI sing 338 n n 
C4B H4B NAI sing 339 n n 
O4B C1B NAI sing 340 n n 
C3B O3B NAI sing 341 n n 
C3B C2B NAI sing 342 n n 
C3B H3B NAI sing 343 n n 
O3B HO3A NAI sing 344 n n 
C2B O2B NAI sing 345 n n 
C2B C1B NAI sing 346 n n 
C2B H2B NAI sing 347 n n 
O2B HO2A NAI sing 348 n n 
C1B N9A NAI sing 349 n n 
C1B H1B NAI sing 350 n n 
N9A C8A NAI sing 351 n y 
N9A C4A NAI sing 352 n y 
C8A N7A NAI doub 353 n y 
C8A H8A NAI sing 354 n n 
N7A C5A NAI sing 355 n y 
C5A C6A NAI sing 356 n y 
C5A C4A NAI doub 357 n y 
C6A N6A NAI sing 358 n n 
C6A N1A NAI doub 359 n y 
N6A H61A NAI sing 360 n n 
N6A H62A NAI sing 361 n n 
N1A C2A NAI sing 362 n y 
C2A N3A NAI doub 363 n y 
C2A H2A NAI sing 364 n n 
N3A C4A NAI sing 365 n y 
O3 PN NAI sing 366 n n 
PN O1N NAI sing 367 n n 
PN O2N NAI doub 368 n n 
PN O5D NAI sing 369 n n 
O1N HO1N NAI sing 370 n n 
O5D C5D NAI sing 371 n n 
C5D C4D NAI sing 372 n n 
C5D H51N NAI sing 373 n n 
C5D H52N NAI sing 374 n n 
C4D O4D NAI sing 375 n n 
C4D C3D NAI sing 376 n n 
C4D H4D NAI sing 377 n n 
O4D C1D NAI sing 378 n n 
C3D O3D NAI sing 379 n n 
C3D C2D NAI sing 380 n n 
C3D H3D NAI sing 381 n n 
O3D HO3N NAI sing 382 n n 
C2D O2D NAI sing 383 n n 
C2D C1D NAI sing 384 n n 
C2D H2D NAI sing 385 n n 
O2D HO2N NAI sing 386 n n 
C1D N1N NAI sing 387 n n 
C1D H1D NAI sing 388 n n 
N1N C2N NAI sing 389 n n 
N1N C6N NAI sing 390 n n 
C2N C3N NAI doub 391 n n 
C2N H2N NAI sing 392 n n 
C3N C7N NAI sing 393 n n 
C3N C4N NAI sing 394 n n 
C7N O7N NAI doub 395 n n 
C7N N7N NAI sing 396 n n 
N7N H71N NAI sing 397 n n 
N7N H72N NAI sing 398 n n 
C4N C5N NAI sing 399 n n 
C4N H4N NAI sing 400 n n 
C4N H42N NAI sing 401 n n 
C5N C6N NAI doub 402 n n 
C5N H5N NAI sing 403 n n 
C6N H6N NAI sing 404 n n 
#
_atom_sites.entry_id                     5VWU 
_atom_sites.fract_transf_matrix[1][1]    0.004582 
_atom_sites.fract_transf_matrix[1][2]    0.002645 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005291 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003145 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 601 601 FAD FAD . 
F 3 NAI A 1 602 602 NAI NDP . 
G 4 SO4 A 1 603 603 SO4 SO4 . 
H 4 SO4 A 1 604 604 SO4 SO4 . 
I 2 FAD B 1 601 601 FAD FAD . 
J 3 NAI B 1 602 602 NAI NDP . 
K 4 SO4 B 1 603 603 SO4 SO4 . 
L 4 SO4 B 1 604 604 SO4 SO4 . 
M 4 SO4 B 1 605 605 SO4 SO4 . 
N 2 FAD C 1 601 601 FAD FAD . 
O 4 SO4 C 1 602 602 SO4 SO4 . 
P 4 SO4 C 1 603 602 SO4 SO4 . 
Q 4 SO4 C 1 604 603 SO4 SO4 . 
R 4 SO4 C 1 605 605 SO4 SO4 . 
S 2 FAD D 1 601 601 FAD FAD . 
T 4 SO4 D 1 602 603 SO4 SO4 . 
U 4 SO4 D 1 603 604 SO4 SO4 . 
V 4 SO4 D 1 604 604 SO4 SO4 . 
W 4 SO4 D 1 605 606 SO4 SO4 . 
X 5 HOH A 1 701 703 HOH HOH . 
X 5 HOH A 2 702 702 HOH HOH . 
Y 5 HOH B 1 701 706 HOH HOH . 
Y 5 HOH B 2 702 703 HOH HOH . 
Y 5 HOH B 3 703 702 HOH HOH . 
Y 5 HOH B 4 704 704 HOH HOH . 
Y 5 HOH B 5 705 705 HOH HOH . 
Y 5 HOH B 6 706 707 HOH HOH . 
Y 5 HOH B 7 707 701 HOH HOH . 
Z 5 HOH C 1 701 702 HOH HOH . 
Z 5 HOH C 2 702 706 HOH HOH . 
Z 5 HOH C 3 703 705 HOH HOH . 
Z 5 HOH C 4 704 707 HOH HOH . 
Z 5 HOH C 5 705 704 HOH HOH . 
AA 5 HOH D 1 701 703 HOH HOH . 
AA 5 HOH D 2 702 705 HOH HOH . 
AA 5 HOH D 3 703 708 HOH HOH . 
AA 5 HOH D 4 704 706 HOH HOH . 
AA 5 HOH D 5 705 707 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAI . . . J 3 23.759 91.328 206.577 1 58.42 ? PA NAI 602 B 1 
HETATM 2 O O1A NAI . . . J 3 23.661 89.961 207.158 1 52.03 ? O1A NAI 602 B 1 
HETATM 3 O O2A NAI . . . J 3 24.803 91.646 205.542 1 54.23 ? O2A NAI 602 B 1 
HETATM 4 O O5B NAI . . . J 3 22.276 91.801 205.987 1 55.09 ? O5B NAI 602 B 1 
HETATM 5 C C5B NAI . . . J 3 21.325 91.042 206.667 1 55.64 ? C5B NAI 602 B 1 
HETATM 6 C C4B NAI . . . J 3 19.978 91.138 205.92 1 62.16 ? C4B NAI 602 B 1 
HETATM 7 O O4B NAI . . . J 3 19.726 92.481 205.457 1 64.42 ? O4B NAI 602 B 1 
HETATM 8 C C3B NAI . . . J 3 20.009 90.184 204.7 1 62.06 ? C3B NAI 602 B 1 
HETATM 9 O O3B NAI . . . J 3 18.73 89.701 204.432 1 62.87 ? O3B NAI 602 B 1 
HETATM 10 C C2B NAI . . . J 3 20.401 91.144 203.576 1 60.35 ? C2B NAI 602 B 1 
HETATM 11 O O2B NAI . . . J 3 20.011 90.744 202.364 1 61.06 ? O2B NAI 602 B 1 
HETATM 12 C C1B NAI . . . J 3 19.583 92.405 204.033 1 59.9 ? C1B NAI 602 B 1 
HETATM 13 N N9A NAI . . . J 3 20.108 93.646 203.432 1 60.05 ? N9A NAI 602 B 1 
HETATM 14 C C8A NAI . . . J 3 21.443 94.155 203.45 1 65.05 ? C8A NAI 602 B 1 
HETATM 15 N N7A NAI . . . J 3 21.581 95.328 202.781 1 66.13 ? N7A NAI 602 B 1 
HETATM 16 C C5A NAI . . . J 3 20.261 95.59 202.306 1 60.07 ? C5A NAI 602 B 1 
HETATM 17 C C6A NAI . . . J 3 19.722 96.643 201.55 1 52.58 ? C6A NAI 602 B 1 
HETATM 18 N N6A NAI . . . J 3 20.525 97.686 201.133 1 50.34 ? N6A NAI 602 B 1 
HETATM 19 N N1A NAI . . . J 3 18.394 96.67 201.209 1 53.24 ? N1A NAI 602 B 1 
HETATM 20 C C2A NAI . . . J 3 17.636 95.61 201.655 1 50.2 ? C2A NAI 602 B 1 
HETATM 21 N N3A NAI . . . J 3 17.984 94.545 202.38 1 58.27 ? N3A NAI 602 B 1 
HETATM 22 C C4A NAI . . . J 3 19.342 94.551 202.703 1 60.44 ? C4A NAI 602 B 1 
HETATM 23 O O3 NAI . . . J 3 24.104 92.17 208.009 1 65.36 ? O3 NAI 602 B 1 
HETATM 24 P PN NAI . . . J 3 24.777 93.631 207.789 1 57.64 ? PN NAI 602 B 1 
HETATM 25 O O1N NAI . . . J 3 24.72 94.309 209.097 1 56.92 ? O1N NAI 602 B 1 
HETATM 26 O O2N NAI . . . J 3 26.037 93.636 206.949 1 56.62 ? O2N NAI 602 B 1 
HETATM 27 O O5D NAI . . . J 3 23.678 94.599 206.766 1 56.58 ? O5D NAI 602 B 1 
HETATM 28 C C5D NAI . . . J 3 22.584 95.041 207.468 1 54.75 ? C5D NAI 602 B 1 
HETATM 29 C C4D NAI . . . J 3 22.356 96.528 207.083 1 61.43 ? C4D NAI 602 B 1 
HETATM 30 O O4D NAI . . . J 3 23.161 97.419 207.93 1 65.92 ? O4D NAI 602 B 1 
HETATM 31 C C3D NAI . . . J 3 22.836 96.808 205.596 1 57.83 ? C3D NAI 602 B 1 
HETATM 32 O O3D NAI . . . J 3 21.871 97.584 204.934 1 58.11 ? O3D NAI 602 B 1 
HETATM 33 C C2D NAI . . . J 3 24.127 97.604 205.831 1 51.98 ? C2D NAI 602 B 1 
HETATM 34 O O2D NAI . . . J 3 24.425 98.496 204.826 1 47.39 ? O2D NAI 602 B 1 
HETATM 35 C C1D NAI . . . J 3 23.725 98.407 207.079 1 60.39 ? C1D NAI 602 B 1 
HETATM 36 N N1N NAI . . . J 3 24.924 99.012 207.682 1 60.55 ? N1N NAI 602 B 1 
HETATM 37 C C2N NAI . . . J 3 24.96 100.38 207.91 1 64.27 ? C2N NAI 602 B 1 
HETATM 38 C C3N NAI . . . J 3 25.982 100.937 208.64 1 61.3 ? C3N NAI 602 B 1 
HETATM 39 C C7N NAI . . . J 3 25.969 102.385 208.805 1 50.4 ? C7N NAI 602 B 1 
HETATM 40 O O7N NAI . . . J 3 26.449 102.966 209.768 1 41.65 ? O7N NAI 602 B 1 
HETATM 41 N N7N NAI . . . J 3 25.399 103.137 207.78 1 50.7 ? N7N NAI 602 B 1 
HETATM 42 C C4N NAI . . . J 3 27.085 100.106 209.231 1 57.82 ? C4N NAI 602 B 1 
HETATM 43 C C5N NAI . . . J 3 27.078 98.713 208.703 1 54.19 ? C5N NAI 602 B 1 
HETATM 44 C C6N NAI . . . J 3 26.056 98.223 207.988 1 55.07 ? C6N NAI 602 B 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#