data_5VWV
#
_model_server_result.job_id            ujmxc45HvxSFuChM8y55Bw 
_model_server_result.datetime_utc      '2025-02-02 03:43:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vwv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":208}' 
#
_entry.id    5VWV 
#
_exptl.entry_id    5VWV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VWV 
_cell.length_a            139.404 
_cell.length_b            139.404 
_cell.length_c            139.404 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VWV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        213 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 3 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 13_455 y-1/4,x+1/4,-z+1/4 0 1 0 1 0 0 0 0 -1 -34.851 34.851 34.851 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 138 n n 
C1 C2 GOL sing 139 n n 
C1 H11 GOL sing 140 n n 
C1 H12 GOL sing 141 n n 
O1 HO1 GOL sing 142 n n 
C2 O2 GOL sing 143 n n 
C2 C3 GOL sing 144 n n 
C2 H2 GOL sing 145 n n 
O2 HO2 GOL sing 146 n n 
C3 O3 GOL sing 147 n n 
C3 H31 GOL sing 148 n n 
C3 H32 GOL sing 149 n n 
O3 HO3 GOL sing 150 n n 
#
_atom_sites.entry_id                     5VWV 
_atom_sites.fract_transf_matrix[1][1]    0.007173 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007173 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007173 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 TFA A 1 201 1 TFA TFA . 
D 4 EDO A 1 202 2 EDO EDO . 
E 4 EDO A 1 203 3 EDO EDO . 
F 4 EDO A 1 204 4 EDO EDO . 
G 4 EDO A 1 205 5 EDO EDO . 
H 4 EDO A 1 206 6 EDO EDO . 
I 5 CL A 1 207 1 CL CL . 
J 6 GOL A 1 208 1 GOL GOL . 
K 4 EDO B 1 201 8 EDO EDO . 
L 7 HOH A 1 301 122 HOH HOH . 
L 7 HOH A 2 302 93 HOH HOH . 
L 7 HOH A 3 303 36 HOH HOH . 
L 7 HOH A 4 304 119 HOH HOH . 
L 7 HOH A 5 305 151 HOH HOH . 
L 7 HOH A 6 306 144 HOH HOH . 
L 7 HOH A 7 307 5 HOH HOH . 
L 7 HOH A 8 308 112 HOH HOH . 
L 7 HOH A 9 309 57 HOH HOH . 
L 7 HOH A 10 310 32 HOH HOH . 
L 7 HOH A 11 311 118 HOH HOH . 
L 7 HOH A 12 312 52 HOH HOH . 
L 7 HOH A 13 313 92 HOH HOH . 
L 7 HOH A 14 314 179 HOH HOH . 
L 7 HOH A 15 315 137 HOH HOH . 
L 7 HOH A 16 316 64 HOH HOH . 
L 7 HOH A 17 317 1 HOH HOH . 
L 7 HOH A 18 318 21 HOH HOH . 
L 7 HOH A 19 319 7 HOH HOH . 
L 7 HOH A 20 320 20 HOH HOH . 
L 7 HOH A 21 321 54 HOH HOH . 
L 7 HOH A 22 322 132 HOH HOH . 
L 7 HOH A 23 323 38 HOH HOH . 
L 7 HOH A 24 324 82 HOH HOH . 
L 7 HOH A 25 325 28 HOH HOH . 
L 7 HOH A 26 326 13 HOH HOH . 
L 7 HOH A 27 327 60 HOH HOH . 
L 7 HOH A 28 328 19 HOH HOH . 
L 7 HOH A 29 329 109 HOH HOH . 
L 7 HOH A 30 330 180 HOH HOH . 
L 7 HOH A 31 331 147 HOH HOH . 
L 7 HOH A 32 332 14 HOH HOH . 
L 7 HOH A 33 333 85 HOH HOH . 
L 7 HOH A 34 334 8 HOH HOH . 
L 7 HOH A 35 335 12 HOH HOH . 
L 7 HOH A 36 336 174 HOH HOH . 
L 7 HOH A 37 337 100 HOH HOH . 
L 7 HOH A 38 338 90 HOH HOH . 
L 7 HOH A 39 339 40 HOH HOH . 
L 7 HOH A 40 340 6 HOH HOH . 
L 7 HOH A 41 341 29 HOH HOH . 
L 7 HOH A 42 342 117 HOH HOH . 
L 7 HOH A 43 343 34 HOH HOH . 
L 7 HOH A 44 344 51 HOH HOH . 
L 7 HOH A 45 345 39 HOH HOH . 
L 7 HOH A 46 346 26 HOH HOH . 
L 7 HOH A 47 347 16 HOH HOH . 
L 7 HOH A 48 348 45 HOH HOH . 
L 7 HOH A 49 349 78 HOH HOH . 
L 7 HOH A 50 350 37 HOH HOH . 
L 7 HOH A 51 351 18 HOH HOH . 
L 7 HOH A 52 352 136 HOH HOH . 
L 7 HOH A 53 353 63 HOH HOH . 
L 7 HOH A 54 354 134 HOH HOH . 
L 7 HOH A 55 355 23 HOH HOH . 
L 7 HOH A 56 356 50 HOH HOH . 
L 7 HOH A 57 357 56 HOH HOH . 
L 7 HOH A 58 358 133 HOH HOH . 
L 7 HOH A 59 359 11 HOH HOH . 
L 7 HOH A 60 360 107 HOH HOH . 
L 7 HOH A 61 361 105 HOH HOH . 
L 7 HOH A 62 362 42 HOH HOH . 
L 7 HOH A 63 363 196 HOH HOH . 
L 7 HOH A 64 364 25 HOH HOH . 
L 7 HOH A 65 365 59 HOH HOH . 
L 7 HOH A 66 366 186 HOH HOH . 
L 7 HOH A 67 367 103 HOH HOH . 
L 7 HOH A 68 368 104 HOH HOH . 
L 7 HOH A 69 369 143 HOH HOH . 
L 7 HOH A 70 370 114 HOH HOH . 
L 7 HOH A 71 371 89 HOH HOH . 
L 7 HOH A 72 372 130 HOH HOH . 
L 7 HOH A 73 373 4 HOH HOH . 
L 7 HOH A 74 374 3 HOH HOH . 
L 7 HOH A 75 375 99 HOH HOH . 
L 7 HOH A 76 376 80 HOH HOH . 
L 7 HOH A 77 377 17 HOH HOH . 
L 7 HOH A 78 378 35 HOH HOH . 
L 7 HOH A 79 379 165 HOH HOH . 
L 7 HOH A 80 380 145 HOH HOH . 
L 7 HOH A 81 381 9 HOH HOH . 
L 7 HOH A 82 382 129 HOH HOH . 
L 7 HOH A 83 383 67 HOH HOH . 
L 7 HOH A 84 384 30 HOH HOH . 
L 7 HOH A 85 385 47 HOH HOH . 
L 7 HOH A 86 386 44 HOH HOH . 
L 7 HOH A 87 387 97 HOH HOH . 
L 7 HOH A 88 388 48 HOH HOH . 
L 7 HOH A 89 389 73 HOH HOH . 
L 7 HOH A 90 390 88 HOH HOH . 
L 7 HOH A 91 391 24 HOH HOH . 
L 7 HOH A 92 392 127 HOH HOH . 
L 7 HOH A 93 393 152 HOH HOH . 
L 7 HOH A 94 394 72 HOH HOH . 
L 7 HOH A 95 395 71 HOH HOH . 
L 7 HOH A 96 396 22 HOH HOH . 
L 7 HOH A 97 397 77 HOH HOH . 
L 7 HOH A 98 398 10 HOH HOH . 
L 7 HOH A 99 399 31 HOH HOH . 
L 7 HOH A 100 400 173 HOH HOH . 
L 7 HOH A 101 401 108 HOH HOH . 
L 7 HOH A 102 402 154 HOH HOH . 
L 7 HOH A 103 403 126 HOH HOH . 
L 7 HOH A 104 404 79 HOH HOH . 
L 7 HOH A 105 405 68 HOH HOH . 
L 7 HOH A 106 406 91 HOH HOH . 
L 7 HOH A 107 407 181 HOH HOH . 
L 7 HOH A 108 408 158 HOH HOH . 
L 7 HOH A 109 409 2 HOH HOH . 
L 7 HOH A 110 410 124 HOH HOH . 
L 7 HOH A 111 411 43 HOH HOH . 
L 7 HOH A 112 412 183 HOH HOH . 
L 7 HOH A 113 413 115 HOH HOH . 
L 7 HOH A 114 414 164 HOH HOH . 
L 7 HOH A 115 415 184 HOH HOH . 
L 7 HOH A 116 416 121 HOH HOH . 
L 7 HOH A 117 417 189 HOH HOH . 
L 7 HOH A 118 418 139 HOH HOH . 
L 7 HOH A 119 419 167 HOH HOH . 
L 7 HOH A 120 420 61 HOH HOH . 
L 7 HOH A 121 421 141 HOH HOH . 
L 7 HOH A 122 422 163 HOH HOH . 
L 7 HOH A 123 423 83 HOH HOH . 
L 7 HOH A 124 424 113 HOH HOH . 
L 7 HOH A 125 425 178 HOH HOH . 
L 7 HOH A 126 426 69 HOH HOH . 
L 7 HOH A 127 427 157 HOH HOH . 
L 7 HOH A 128 428 27 HOH HOH . 
L 7 HOH A 129 429 159 HOH HOH . 
L 7 HOH A 130 430 185 HOH HOH . 
L 7 HOH A 131 431 161 HOH HOH . 
L 7 HOH A 132 432 156 HOH HOH . 
L 7 HOH A 133 433 111 HOH HOH . 
L 7 HOH A 134 434 95 HOH HOH . 
L 7 HOH A 135 435 195 HOH HOH . 
L 7 HOH A 136 436 55 HOH HOH . 
L 7 HOH A 137 437 190 HOH HOH . 
L 7 HOH A 138 438 53 HOH HOH . 
L 7 HOH A 139 439 135 HOH HOH . 
L 7 HOH A 140 440 197 HOH HOH . 
L 7 HOH A 141 441 101 HOH HOH . 
L 7 HOH A 142 442 33 HOH HOH . 
L 7 HOH A 143 443 58 HOH HOH . 
L 7 HOH A 144 444 166 HOH HOH . 
L 7 HOH A 145 445 41 HOH HOH . 
L 7 HOH A 146 446 46 HOH HOH . 
L 7 HOH A 147 447 187 HOH HOH . 
L 7 HOH A 148 448 62 HOH HOH . 
L 7 HOH A 149 449 96 HOH HOH . 
L 7 HOH A 150 450 169 HOH HOH . 
L 7 HOH A 151 451 110 HOH HOH . 
L 7 HOH A 152 452 155 HOH HOH . 
L 7 HOH A 153 453 182 HOH HOH . 
L 7 HOH A 154 454 76 HOH HOH . 
L 7 HOH A 155 455 106 HOH HOH . 
L 7 HOH A 156 456 160 HOH HOH . 
L 7 HOH A 157 457 74 HOH HOH . 
L 7 HOH A 158 458 102 HOH HOH . 
L 7 HOH A 159 459 94 HOH HOH . 
M 7 HOH B 1 301 70 HOH HOH . 
M 7 HOH B 2 302 65 HOH HOH . 
M 7 HOH B 3 303 15 HOH HOH . 
M 7 HOH B 4 304 75 HOH HOH . 
M 7 HOH B 5 305 116 HOH HOH . 
M 7 HOH B 6 306 66 HOH HOH . 
M 7 HOH B 7 307 138 HOH HOH . 
M 7 HOH B 8 308 98 HOH HOH . 
M 7 HOH B 9 309 87 HOH HOH . 
M 7 HOH B 10 310 148 HOH HOH . 
M 7 HOH B 11 311 172 HOH HOH . 
M 7 HOH B 12 312 81 HOH HOH . 
M 7 HOH B 13 313 86 HOH HOH . 
M 7 HOH B 14 314 84 HOH HOH . 
M 7 HOH B 15 315 146 HOH HOH . 
M 7 HOH B 16 316 49 HOH HOH . 
M 7 HOH B 17 317 128 HOH HOH . 
M 7 HOH B 18 318 162 HOH HOH . 
M 7 HOH B 19 319 191 HOH HOH . 
M 7 HOH B 20 320 177 HOH HOH . 
M 7 HOH B 21 321 142 HOH HOH . 
M 7 HOH B 22 322 170 HOH HOH . 
M 7 HOH B 23 323 175 HOH HOH . 
M 7 HOH B 24 324 176 HOH HOH . 
M 7 HOH B 25 325 140 HOH HOH . 
M 7 HOH B 26 326 131 HOH HOH . 
M 7 HOH B 27 327 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 6 5.177 42.235 4.577 1 58.53 ? C1 GOL 208 A 1 
HETATM 2 O O1 GOL . . . J 6 4.705 43.533 4.34 1 54.99 ? O1 GOL 208 A 1 
HETATM 3 C C2 GOL . . . J 6 6.684 42.307 4.623 1 68.04 ? C2 GOL 208 A 1 
HETATM 4 O O2 GOL . . . J 6 7.157 42.384 5.955 1 46 ? O2 GOL 208 A 1 
HETATM 5 C C3 GOL . . . J 6 7.161 41.104 3.825 1 62.18 ? C3 GOL 208 A 1 
HETATM 6 O O3 GOL . . . J 6 6.845 41.434 2.498 1 43.87 ? O3 GOL 208 A 1 
HETATM 7 H H11 GOL . . . J 6 4.789 41.861 5.525 1 70.24 ? H11 GOL 208 A 1 
HETATM 8 H H12 GOL . . . J 6 4.856 41.565 3.78 1 70.24 ? H12 GOL 208 A 1 
HETATM 9 H HO1 GOL . . . J 6 3.731 43.513 4.238 1 65.98 ? HO1 GOL 208 A 1 
HETATM 10 H H2 GOL . . . J 6 6.991 43.205 4.088 1 81.65 ? H2 GOL 208 A 1 
HETATM 11 H HO2 GOL . . . J 6 6.875 41.586 6.448 1 55.21 ? HO2 GOL 208 A 1 
HETATM 12 H H31 GOL . . . J 6 8.235 40.96 3.943 1 74.62 ? H31 GOL 208 A 1 
HETATM 13 H H32 GOL . . . J 6 6.638 40.2 4.136 1 74.62 ? H32 GOL 208 A 1 
HETATM 14 H HO3 GOL . . . J 6 6.985 40.651 1.925 1 52.65 ? HO3 GOL 208 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           352 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#