data_5VWX # _model_server_result.job_id DYZ2omH9lmhj5fJOa5-NCQ _model_server_result.datetime_utc '2025-01-10 09:55:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 5VWX # _exptl.entry_id 5VWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VWX _cell.length_a 61.629 _cell.length_b 76.481 _cell.length_c 77.546 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 13 B ARG 154 1_555 B N 9R4 14 B 9R4 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C 9R4 14 B 9R4 155 1_555 B N GLY 15 B GLY 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 D C ARG 13 D ARG 154 1_555 D N 9R4 14 D 9R4 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 D C 9R4 14 D 9R4 155 1_555 D N GLY 15 D GLY 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 114 n n C1 C2 EDO sing 115 n n C1 H11 EDO sing 116 n n C1 H12 EDO sing 117 n n O1 HO1 EDO sing 118 n n C2 O2 EDO sing 119 n n C2 H21 EDO sing 120 n n C2 H22 EDO sing 121 n n O2 HO2 EDO sing 122 n n # _atom_sites.entry_id 5VWX _atom_sites.fract_transf_matrix[1][1] 0.016226 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012896 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO B 1 201 1 EDO EDO . F 3 EDO B 1 202 2 EDO EDO . G 3 EDO C 1 201 3 EDO EDO . H 4 HOH A 1 201 7 HOH HOH . H 4 HOH A 2 202 33 HOH HOH . H 4 HOH A 3 203 20 HOH HOH . H 4 HOH A 4 204 9 HOH HOH . H 4 HOH A 5 205 4 HOH HOH . H 4 HOH A 6 206 22 HOH HOH . H 4 HOH A 7 207 14 HOH HOH . H 4 HOH A 8 208 1 HOH HOH . H 4 HOH A 9 209 10 HOH HOH . H 4 HOH A 10 210 16 HOH HOH . H 4 HOH A 11 211 25 HOH HOH . H 4 HOH A 12 212 26 HOH HOH . H 4 HOH A 13 213 31 HOH HOH . H 4 HOH A 14 214 21 HOH HOH . H 4 HOH A 15 215 27 HOH HOH . I 4 HOH B 1 301 29 HOH HOH . I 4 HOH B 2 302 5 HOH HOH . I 4 HOH B 3 303 17 HOH HOH . I 4 HOH B 4 304 37 HOH HOH . J 4 HOH C 1 301 13 HOH HOH . J 4 HOH C 2 302 15 HOH HOH . J 4 HOH C 3 303 24 HOH HOH . J 4 HOH C 4 304 23 HOH HOH . J 4 HOH C 5 305 6 HOH HOH . J 4 HOH C 6 306 2 HOH HOH . J 4 HOH C 7 307 28 HOH HOH . J 4 HOH C 8 308 3 HOH HOH . J 4 HOH C 9 309 8 HOH HOH . J 4 HOH C 10 310 19 HOH HOH . J 4 HOH C 11 311 11 HOH HOH . J 4 HOH C 12 312 12 HOH HOH . J 4 HOH C 13 313 18 HOH HOH . J 4 HOH C 14 314 36 HOH HOH . J 4 HOH C 15 315 35 HOH HOH . J 4 HOH C 16 316 32 HOH HOH . J 4 HOH C 17 317 34 HOH HOH . K 4 HOH D 1 201 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 97.775 -9.582 40.203 1 73.23 ? C1 EDO 202 B 1 HETATM 2 O O1 EDO . . . F 3 98.448 -9.486 41.463 1 70.2 ? O1 EDO 202 B 1 HETATM 3 C C2 EDO . . . F 3 98.626 -10.383 39.224 1 72.44 ? C2 EDO 202 B 1 HETATM 4 O O2 EDO . . . F 3 97.8 -10.894 38.171 1 69.94 ? O2 EDO 202 B 1 HETATM 5 H H11 EDO . . . F 3 97.597 -8.582 39.803 1 87.88 ? H11 EDO 202 B 1 HETATM 6 H H12 EDO . . . F 3 96.809 -10.072 40.337 1 87.88 ? H12 EDO 202 B 1 HETATM 7 H HO1 EDO . . . F 3 97.905 -8.977 42.081 1 84.24 ? HO1 EDO 202 B 1 HETATM 8 H H21 EDO . . . F 3 99.405 -9.744 38.804 1 86.92 ? H21 EDO 202 B 1 HETATM 9 H H22 EDO . . . F 3 99.109 -11.211 39.747 1 86.92 ? H22 EDO 202 B 1 HETATM 10 H HO2 EDO . . . F 3 98.343 -11.401 37.552 1 83.93 ? HO2 EDO 202 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #