data_5VWY # _model_server_result.job_id q34f0kO5E8PXtgyidwzfoQ _model_server_result.datetime_utc '2025-01-10 09:17:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5VWY # _exptl.entry_id 5VWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.86 _cell.angle_gamma 90 _cell.entry_id 5VWY _cell.length_a 65.89 _cell.length_b 37.54 _cell.length_c 69.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -21.33351 0 66.207816 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 14 B ARG 154 1_555 B N 9R1 15 B 9R1 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C 9R1 15 B 9R1 155 1_555 B N GLY 16 B GLY 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 287 n n P O2 PO4 sing 288 n n P O3 PO4 sing 289 n n P O4 PO4 sing 290 n n # _atom_sites.entry_id 5VWY _atom_sites.fract_transf_matrix[1][1] 0.015177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00489 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015104 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PO4 A 1 201 1 PO4 PO4 . D 4 HOH A 1 301 97 HOH HOH . D 4 HOH A 2 302 45 HOH HOH . D 4 HOH A 3 303 40 HOH HOH . D 4 HOH A 4 304 95 HOH HOH . D 4 HOH A 5 305 99 HOH HOH . D 4 HOH A 6 306 20 HOH HOH . D 4 HOH A 7 307 61 HOH HOH . D 4 HOH A 8 308 92 HOH HOH . D 4 HOH A 9 309 56 HOH HOH . D 4 HOH A 10 310 24 HOH HOH . D 4 HOH A 11 311 75 HOH HOH . D 4 HOH A 12 312 64 HOH HOH . D 4 HOH A 13 313 57 HOH HOH . D 4 HOH A 14 314 96 HOH HOH . D 4 HOH A 15 315 59 HOH HOH . D 4 HOH A 16 316 55 HOH HOH . D 4 HOH A 17 317 25 HOH HOH . D 4 HOH A 18 318 107 HOH HOH . D 4 HOH A 19 319 16 HOH HOH . D 4 HOH A 20 320 133 HOH HOH . D 4 HOH A 21 321 88 HOH HOH . D 4 HOH A 22 322 89 HOH HOH . D 4 HOH A 23 323 134 HOH HOH . D 4 HOH A 24 324 103 HOH HOH . D 4 HOH A 25 325 90 HOH HOH . D 4 HOH A 26 326 72 HOH HOH . D 4 HOH A 27 327 22 HOH HOH . D 4 HOH A 28 328 53 HOH HOH . D 4 HOH A 29 329 19 HOH HOH . D 4 HOH A 30 330 73 HOH HOH . D 4 HOH A 31 331 7 HOH HOH . D 4 HOH A 32 332 4 HOH HOH . D 4 HOH A 33 333 41 HOH HOH . D 4 HOH A 34 334 114 HOH HOH . D 4 HOH A 35 335 136 HOH HOH . D 4 HOH A 36 336 32 HOH HOH . D 4 HOH A 37 337 51 HOH HOH . D 4 HOH A 38 338 74 HOH HOH . D 4 HOH A 39 339 69 HOH HOH . D 4 HOH A 40 340 6 HOH HOH . D 4 HOH A 41 341 30 HOH HOH . D 4 HOH A 42 342 11 HOH HOH . D 4 HOH A 43 343 155 HOH HOH . D 4 HOH A 44 344 36 HOH HOH . D 4 HOH A 45 345 117 HOH HOH . D 4 HOH A 46 346 137 HOH HOH . D 4 HOH A 47 347 14 HOH HOH . D 4 HOH A 48 348 78 HOH HOH . D 4 HOH A 49 349 29 HOH HOH . D 4 HOH A 50 350 100 HOH HOH . D 4 HOH A 51 351 113 HOH HOH . D 4 HOH A 52 352 17 HOH HOH . D 4 HOH A 53 353 132 HOH HOH . D 4 HOH A 54 354 116 HOH HOH . D 4 HOH A 55 355 31 HOH HOH . D 4 HOH A 56 356 33 HOH HOH . D 4 HOH A 57 357 156 HOH HOH . D 4 HOH A 58 358 47 HOH HOH . D 4 HOH A 59 359 26 HOH HOH . D 4 HOH A 60 360 111 HOH HOH . D 4 HOH A 61 361 152 HOH HOH . D 4 HOH A 62 362 105 HOH HOH . D 4 HOH A 63 363 9 HOH HOH . D 4 HOH A 64 364 126 HOH HOH . D 4 HOH A 65 365 130 HOH HOH . D 4 HOH A 66 366 81 HOH HOH . D 4 HOH A 67 367 43 HOH HOH . D 4 HOH A 68 368 49 HOH HOH . D 4 HOH A 69 369 102 HOH HOH . D 4 HOH A 70 370 98 HOH HOH . D 4 HOH A 71 371 10 HOH HOH . D 4 HOH A 72 372 34 HOH HOH . D 4 HOH A 73 373 28 HOH HOH . D 4 HOH A 74 374 46 HOH HOH . D 4 HOH A 75 375 135 HOH HOH . D 4 HOH A 76 376 38 HOH HOH . D 4 HOH A 77 377 76 HOH HOH . D 4 HOH A 78 378 23 HOH HOH . D 4 HOH A 79 379 65 HOH HOH . D 4 HOH A 80 380 154 HOH HOH . D 4 HOH A 81 381 44 HOH HOH . D 4 HOH A 82 382 54 HOH HOH . D 4 HOH A 83 383 138 HOH HOH . D 4 HOH A 84 384 144 HOH HOH . D 4 HOH A 85 385 109 HOH HOH . D 4 HOH A 86 386 112 HOH HOH . D 4 HOH A 87 387 50 HOH HOH . D 4 HOH A 88 388 27 HOH HOH . D 4 HOH A 89 389 124 HOH HOH . D 4 HOH A 90 390 142 HOH HOH . D 4 HOH A 91 391 108 HOH HOH . D 4 HOH A 92 392 127 HOH HOH . D 4 HOH A 93 393 149 HOH HOH . D 4 HOH A 94 394 91 HOH HOH . D 4 HOH A 95 395 18 HOH HOH . D 4 HOH A 96 396 118 HOH HOH . D 4 HOH A 97 397 120 HOH HOH . D 4 HOH A 98 398 101 HOH HOH . D 4 HOH A 99 399 131 HOH HOH . D 4 HOH A 100 400 87 HOH HOH . D 4 HOH A 101 401 80 HOH HOH . D 4 HOH A 102 402 42 HOH HOH . D 4 HOH A 103 403 139 HOH HOH . D 4 HOH A 104 404 70 HOH HOH . D 4 HOH A 105 405 145 HOH HOH . D 4 HOH A 106 406 68 HOH HOH . D 4 HOH A 107 407 106 HOH HOH . D 4 HOH A 108 408 104 HOH HOH . D 4 HOH A 109 409 146 HOH HOH . D 4 HOH A 110 410 125 HOH HOH . D 4 HOH A 111 411 67 HOH HOH . D 4 HOH A 112 412 121 HOH HOH . D 4 HOH A 113 413 140 HOH HOH . D 4 HOH A 114 414 94 HOH HOH . D 4 HOH A 115 415 71 HOH HOH . D 4 HOH A 116 416 143 HOH HOH . E 4 HOH B 1 201 93 HOH HOH . E 4 HOH B 2 202 153 HOH HOH . E 4 HOH B 3 203 82 HOH HOH . E 4 HOH B 4 204 129 HOH HOH . E 4 HOH B 5 205 5 HOH HOH . E 4 HOH B 6 206 66 HOH HOH . E 4 HOH B 7 207 39 HOH HOH . E 4 HOH B 8 208 2 HOH HOH . E 4 HOH B 9 209 15 HOH HOH . E 4 HOH B 10 210 21 HOH HOH . E 4 HOH B 11 211 83 HOH HOH . E 4 HOH B 12 212 63 HOH HOH . E 4 HOH B 13 213 13 HOH HOH . E 4 HOH B 14 214 147 HOH HOH . E 4 HOH B 15 215 52 HOH HOH . E 4 HOH B 16 216 77 HOH HOH . E 4 HOH B 17 217 62 HOH HOH . E 4 HOH B 18 218 48 HOH HOH . E 4 HOH B 19 219 141 HOH HOH . E 4 HOH B 20 220 37 HOH HOH . E 4 HOH B 21 221 151 HOH HOH . E 4 HOH B 22 222 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -14.4 10.884 -1.73 1 26.75 ? P PO4 201 A 1 HETATM 2 O O1 PO4 . . . C 3 -13.218 10.898 -2.686 1 29.13 ? O1 PO4 201 A 1 HETATM 3 O O2 PO4 . . . C 3 -15.633 11.478 -2.408 1 24.42 ? O2 PO4 201 A 1 HETATM 4 O O3 PO4 . . . C 3 -14.695 9.454 -1.319 1 27.72 ? O3 PO4 201 A 1 HETATM 5 O O4 PO4 . . . C 3 -13.975 11.676 -0.505 1 16.25 ? O4 PO4 201 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #