data_5VX4 # _model_server_result.job_id r-cnD20kwl3Vj-a4mvITxA _model_server_result.datetime_utc '2024-11-09 02:30:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5VX4 # _exptl.entry_id 5VX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.52 _cell.angle_gamma 90 _cell.entry_id 5VX4 _cell.length_a 34.33 _cell.length_b 56.59 _cell.length_c 37.31 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 5VX4 _atom_sites.fract_transf_matrix[1][1] 0.029129 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001792 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 301 1 TRS TRS . C 3 HOH A 1 401 33 HOH HOH . C 3 HOH A 2 402 121 HOH HOH . C 3 HOH A 3 403 123 HOH HOH . C 3 HOH A 4 404 77 HOH HOH . C 3 HOH A 5 405 196 HOH HOH . C 3 HOH A 6 406 136 HOH HOH . C 3 HOH A 7 407 274 HOH HOH . C 3 HOH A 8 408 161 HOH HOH . C 3 HOH A 9 409 96 HOH HOH . C 3 HOH A 10 410 111 HOH HOH . C 3 HOH A 11 411 241 HOH HOH . C 3 HOH A 12 412 58 HOH HOH . C 3 HOH A 13 413 74 HOH HOH . C 3 HOH A 14 414 44 HOH HOH . C 3 HOH A 15 415 134 HOH HOH . C 3 HOH A 16 416 73 HOH HOH . C 3 HOH A 17 417 204 HOH HOH . C 3 HOH A 18 418 1 HOH HOH . C 3 HOH A 19 419 239 HOH HOH . C 3 HOH A 20 420 248 HOH HOH . C 3 HOH A 21 421 264 HOH HOH . C 3 HOH A 22 422 263 HOH HOH . C 3 HOH A 23 423 249 HOH HOH . C 3 HOH A 24 424 86 HOH HOH . C 3 HOH A 25 425 224 HOH HOH . C 3 HOH A 26 426 245 HOH HOH . C 3 HOH A 27 427 168 HOH HOH . C 3 HOH A 28 428 110 HOH HOH . C 3 HOH A 29 429 75 HOH HOH . C 3 HOH A 30 430 90 HOH HOH . C 3 HOH A 31 431 37 HOH HOH . C 3 HOH A 32 432 56 HOH HOH . C 3 HOH A 33 433 76 HOH HOH . C 3 HOH A 34 434 13 HOH HOH . C 3 HOH A 35 435 7 HOH HOH . C 3 HOH A 36 436 67 HOH HOH . C 3 HOH A 37 437 43 HOH HOH . C 3 HOH A 38 438 125 HOH HOH . C 3 HOH A 39 439 29 HOH HOH . C 3 HOH A 40 440 175 HOH HOH . C 3 HOH A 41 441 189 HOH HOH . C 3 HOH A 42 442 262 HOH HOH . C 3 HOH A 43 443 88 HOH HOH . C 3 HOH A 44 444 62 HOH HOH . C 3 HOH A 45 445 152 HOH HOH . C 3 HOH A 46 446 50 HOH HOH . C 3 HOH A 47 447 54 HOH HOH . C 3 HOH A 48 448 203 HOH HOH . C 3 HOH A 49 449 182 HOH HOH . C 3 HOH A 50 450 270 HOH HOH . C 3 HOH A 51 451 10 HOH HOH . C 3 HOH A 52 452 49 HOH HOH . C 3 HOH A 53 453 140 HOH HOH . C 3 HOH A 54 454 20 HOH HOH . C 3 HOH A 55 455 39 HOH HOH . C 3 HOH A 56 456 99 HOH HOH . C 3 HOH A 57 457 9 HOH HOH . C 3 HOH A 58 458 52 HOH HOH . C 3 HOH A 59 459 40 HOH HOH . C 3 HOH A 60 460 106 HOH HOH . C 3 HOH A 61 461 69 HOH HOH . C 3 HOH A 62 462 225 HOH HOH . C 3 HOH A 63 463 21 HOH HOH . C 3 HOH A 64 464 138 HOH HOH . C 3 HOH A 65 465 24 HOH HOH . C 3 HOH A 66 466 158 HOH HOH . C 3 HOH A 67 467 31 HOH HOH . C 3 HOH A 68 468 163 HOH HOH . C 3 HOH A 69 469 112 HOH HOH . C 3 HOH A 70 470 87 HOH HOH . C 3 HOH A 71 471 53 HOH HOH . C 3 HOH A 72 472 91 HOH HOH . C 3 HOH A 73 473 113 HOH HOH . C 3 HOH A 74 474 256 HOH HOH . C 3 HOH A 75 475 59 HOH HOH . C 3 HOH A 76 476 70 HOH HOH . C 3 HOH A 77 477 226 HOH HOH . C 3 HOH A 78 478 47 HOH HOH . C 3 HOH A 79 479 12 HOH HOH . C 3 HOH A 80 480 3 HOH HOH . C 3 HOH A 81 481 117 HOH HOH . C 3 HOH A 82 482 5 HOH HOH . C 3 HOH A 83 483 150 HOH HOH . C 3 HOH A 84 484 94 HOH HOH . C 3 HOH A 85 485 130 HOH HOH . C 3 HOH A 86 486 89 HOH HOH . C 3 HOH A 87 487 28 HOH HOH . C 3 HOH A 88 488 231 HOH HOH . C 3 HOH A 89 489 236 HOH HOH . C 3 HOH A 90 490 32 HOH HOH . C 3 HOH A 91 491 155 HOH HOH . C 3 HOH A 92 492 14 HOH HOH . C 3 HOH A 93 493 195 HOH HOH . C 3 HOH A 94 494 93 HOH HOH . C 3 HOH A 95 495 26 HOH HOH . C 3 HOH A 96 496 61 HOH HOH . C 3 HOH A 97 497 202 HOH HOH . C 3 HOH A 98 498 105 HOH HOH . C 3 HOH A 99 499 211 HOH HOH . C 3 HOH A 100 500 46 HOH HOH . C 3 HOH A 101 501 179 HOH HOH . C 3 HOH A 102 502 160 HOH HOH . C 3 HOH A 103 503 164 HOH HOH . C 3 HOH A 104 504 36 HOH HOH . C 3 HOH A 105 505 120 HOH HOH . C 3 HOH A 106 506 17 HOH HOH . C 3 HOH A 107 507 63 HOH HOH . C 3 HOH A 108 508 15 HOH HOH . C 3 HOH A 109 509 19 HOH HOH . C 3 HOH A 110 510 128 HOH HOH . C 3 HOH A 111 511 95 HOH HOH . C 3 HOH A 112 512 6 HOH HOH . C 3 HOH A 113 513 57 HOH HOH . C 3 HOH A 114 514 178 HOH HOH . C 3 HOH A 115 515 35 HOH HOH . C 3 HOH A 116 516 200 HOH HOH . C 3 HOH A 117 517 133 HOH HOH . C 3 HOH A 118 518 114 HOH HOH . C 3 HOH A 119 519 64 HOH HOH . C 3 HOH A 120 520 11 HOH HOH . C 3 HOH A 121 521 4 HOH HOH . C 3 HOH A 122 522 8 HOH HOH . C 3 HOH A 123 523 167 HOH HOH . C 3 HOH A 124 524 55 HOH HOH . C 3 HOH A 125 525 213 HOH HOH . C 3 HOH A 126 526 255 HOH HOH . C 3 HOH A 127 527 223 HOH HOH . C 3 HOH A 128 528 48 HOH HOH . C 3 HOH A 129 529 137 HOH HOH . C 3 HOH A 130 530 42 HOH HOH . C 3 HOH A 131 531 79 HOH HOH . C 3 HOH A 132 532 41 HOH HOH . C 3 HOH A 133 533 25 HOH HOH . C 3 HOH A 134 534 82 HOH HOH . C 3 HOH A 135 535 206 HOH HOH . C 3 HOH A 136 536 18 HOH HOH . C 3 HOH A 137 537 100 HOH HOH . C 3 HOH A 138 538 229 HOH HOH . C 3 HOH A 139 539 147 HOH HOH . C 3 HOH A 140 540 119 HOH HOH . C 3 HOH A 141 541 84 HOH HOH . C 3 HOH A 142 542 139 HOH HOH . C 3 HOH A 143 543 78 HOH HOH . C 3 HOH A 144 544 51 HOH HOH . C 3 HOH A 145 545 185 HOH HOH . C 3 HOH A 146 546 259 HOH HOH . C 3 HOH A 147 547 81 HOH HOH . C 3 HOH A 148 548 135 HOH HOH . C 3 HOH A 149 549 97 HOH HOH . C 3 HOH A 150 550 151 HOH HOH . C 3 HOH A 151 551 124 HOH HOH . C 3 HOH A 152 552 251 HOH HOH . C 3 HOH A 153 553 68 HOH HOH . C 3 HOH A 154 554 208 HOH HOH . C 3 HOH A 155 555 162 HOH HOH . C 3 HOH A 156 556 23 HOH HOH . C 3 HOH A 157 557 194 HOH HOH . C 3 HOH A 158 558 2 HOH HOH . C 3 HOH A 159 559 143 HOH HOH . C 3 HOH A 160 560 238 HOH HOH . C 3 HOH A 161 561 156 HOH HOH . C 3 HOH A 162 562 116 HOH HOH . C 3 HOH A 163 563 243 HOH HOH . C 3 HOH A 164 564 16 HOH HOH . C 3 HOH A 165 565 115 HOH HOH . C 3 HOH A 166 566 107 HOH HOH . C 3 HOH A 167 567 250 HOH HOH . C 3 HOH A 168 568 247 HOH HOH . C 3 HOH A 169 569 60 HOH HOH . C 3 HOH A 170 570 45 HOH HOH . C 3 HOH A 171 571 209 HOH HOH . C 3 HOH A 172 572 199 HOH HOH . C 3 HOH A 173 573 118 HOH HOH . C 3 HOH A 174 574 83 HOH HOH . C 3 HOH A 175 575 234 HOH HOH . C 3 HOH A 176 576 244 HOH HOH . C 3 HOH A 177 577 260 HOH HOH . C 3 HOH A 178 578 66 HOH HOH . C 3 HOH A 179 579 92 HOH HOH . C 3 HOH A 180 580 22 HOH HOH . C 3 HOH A 181 581 108 HOH HOH . C 3 HOH A 182 582 186 HOH HOH . C 3 HOH A 183 583 85 HOH HOH . C 3 HOH A 184 584 176 HOH HOH . C 3 HOH A 185 585 165 HOH HOH . C 3 HOH A 186 586 230 HOH HOH . C 3 HOH A 187 587 214 HOH HOH . C 3 HOH A 188 588 34 HOH HOH . C 3 HOH A 189 589 240 HOH HOH . C 3 HOH A 190 590 159 HOH HOH . C 3 HOH A 191 591 103 HOH HOH . C 3 HOH A 192 592 258 HOH HOH . C 3 HOH A 193 593 197 HOH HOH . C 3 HOH A 194 594 207 HOH HOH . C 3 HOH A 195 595 246 HOH HOH . C 3 HOH A 196 596 265 HOH HOH . C 3 HOH A 197 597 191 HOH HOH . C 3 HOH A 198 598 273 HOH HOH . C 3 HOH A 199 599 192 HOH HOH . C 3 HOH A 200 600 166 HOH HOH . C 3 HOH A 201 601 104 HOH HOH . C 3 HOH A 202 602 242 HOH HOH . C 3 HOH A 203 603 237 HOH HOH . C 3 HOH A 204 604 153 HOH HOH . C 3 HOH A 205 605 212 HOH HOH . C 3 HOH A 206 606 174 HOH HOH . C 3 HOH A 207 607 30 HOH HOH . C 3 HOH A 208 608 145 HOH HOH . C 3 HOH A 209 609 171 HOH HOH . C 3 HOH A 210 610 102 HOH HOH . C 3 HOH A 211 611 272 HOH HOH . C 3 HOH A 212 612 252 HOH HOH . C 3 HOH A 213 613 129 HOH HOH . C 3 HOH A 214 614 228 HOH HOH . C 3 HOH A 215 615 172 HOH HOH . C 3 HOH A 216 616 215 HOH HOH . C 3 HOH A 217 617 217 HOH HOH . C 3 HOH A 218 618 169 HOH HOH . C 3 HOH A 219 619 227 HOH HOH . C 3 HOH A 220 620 232 HOH HOH . C 3 HOH A 221 621 126 HOH HOH . C 3 HOH A 222 622 127 HOH HOH . C 3 HOH A 223 623 142 HOH HOH . C 3 HOH A 224 624 181 HOH HOH . C 3 HOH A 225 625 132 HOH HOH . C 3 HOH A 226 626 201 HOH HOH . C 3 HOH A 227 627 98 HOH HOH . C 3 HOH A 228 628 131 HOH HOH . C 3 HOH A 229 629 177 HOH HOH . C 3 HOH A 230 630 157 HOH HOH . C 3 HOH A 231 631 221 HOH HOH . C 3 HOH A 232 632 187 HOH HOH . C 3 HOH A 233 633 27 HOH HOH . C 3 HOH A 234 634 219 HOH HOH . C 3 HOH A 235 635 101 HOH HOH . C 3 HOH A 236 636 71 HOH HOH . C 3 HOH A 237 637 180 HOH HOH . C 3 HOH A 238 638 154 HOH HOH . C 3 HOH A 239 639 38 HOH HOH . C 3 HOH A 240 640 216 HOH HOH . C 3 HOH A 241 641 198 HOH HOH . C 3 HOH A 242 642 193 HOH HOH . C 3 HOH A 243 643 184 HOH HOH . C 3 HOH A 244 644 183 HOH HOH . C 3 HOH A 245 645 205 HOH HOH . C 3 HOH A 246 646 235 HOH HOH . C 3 HOH A 247 647 271 HOH HOH . C 3 HOH A 248 648 190 HOH HOH . C 3 HOH A 249 649 188 HOH HOH . C 3 HOH A 250 650 218 HOH HOH . C 3 HOH A 251 651 109 HOH HOH . C 3 HOH A 252 652 72 HOH HOH . C 3 HOH A 253 653 268 HOH HOH . C 3 HOH A 254 654 261 HOH HOH . C 3 HOH A 255 655 254 HOH HOH . C 3 HOH A 256 656 146 HOH HOH . C 3 HOH A 257 657 149 HOH HOH . C 3 HOH A 258 658 65 HOH HOH . C 3 HOH A 259 659 170 HOH HOH . C 3 HOH A 260 660 269 HOH HOH . C 3 HOH A 261 661 80 HOH HOH . C 3 HOH A 262 662 257 HOH HOH . C 3 HOH A 263 663 173 HOH HOH . C 3 HOH A 264 664 222 HOH HOH . C 3 HOH A 265 665 210 HOH HOH . C 3 HOH A 266 666 141 HOH HOH . C 3 HOH A 267 667 144 HOH HOH . C 3 HOH A 268 668 148 HOH HOH . C 3 HOH A 269 669 122 HOH HOH . C 3 HOH A 270 670 266 HOH HOH . C 3 HOH A 271 671 220 HOH HOH . C 3 HOH A 272 672 253 HOH HOH . C 3 HOH A 273 673 267 HOH HOH . C 3 HOH A 274 674 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . B 2 85.36 77.5 53.78 1 12.26 ? C TRS 301 A 1 HETATM 2 C C1 TRS . . . B 2 84.545 78.749 53.458 1 11.83 ? C1 TRS 301 A 1 HETATM 3 C C2 TRS . . . B 2 84.766 76.297 53.054 1 11.19 ? C2 TRS 301 A 1 HETATM 4 C C3 TRS . . . B 2 85.397 77.237 55.282 1 12.66 ? C3 TRS 301 A 1 HETATM 5 N N TRS . . . B 2 86.738 77.72 53.326 1 15.34 ? N TRS 301 A 1 HETATM 6 O O1 TRS . . . B 2 85.071 79.86 54.171 1 12.68 ? O1 TRS 301 A 1 HETATM 7 O O2 TRS . . . B 2 85.601 75.153 53.148 1 10.31 ? O2 TRS 301 A 1 HETATM 8 O O3 TRS . . . B 2 84.088 77.068 55.774 1 13.26 ? O3 TRS 301 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #