data_5VX9 # _model_server_result.job_id nHGkhVbsAJZLAgewBPCynw _model_server_result.datetime_utc '2024-12-03 20:39:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vx9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":307}' # _entry.id 5VX9 # _exptl.entry_id 5VX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5VX9 _cell.length_a 36.51 _cell.length_b 42.63 _cell.length_c 95.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 NAG GAL C1 O1 . O3 HO3 . sing 3 ? 2 4 3 GAL NAG C1 O1 . O3 HO3 . sing 4 ? 2 5 4 FUC GAL C1 O1 . O2 HO2 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC B 5 BGC 2 n B GAL 2 B 2 GAL B 4 GAL 2 n B NAG 3 B 3 NAG B 3 NAG 2 n B GAL 4 B 4 GAL B 2 GAL 2 n B FUC 5 B 5 FUC B 1 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GAL . B GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 B O3 GAL . B GAL 2 1_555 B C1 NAG . B NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? covale ? covale3 B O3 NAG . B NAG 3 1_555 B C1 GAL . B GAL 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 B O2 GAL . B GAL 4 1_555 B C1 FUC . B FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 391 n n S O2 SO4 doub 392 n n S O3 SO4 sing 393 n n S O4 SO4 sing 394 n n # _atom_sites.entry_id 5VX9 _atom_sites.fract_transf_matrix[1][1] 0.02739 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 306 1 SO4 SO4 . D 3 SO4 A 1 307 2 SO4 SO4 . E 4 HOH A 1 401 142 HOH HOH . E 4 HOH A 2 402 61 HOH HOH . E 4 HOH A 3 403 166 HOH HOH . E 4 HOH A 4 404 164 HOH HOH . E 4 HOH A 5 405 77 HOH HOH . E 4 HOH A 6 406 143 HOH HOH . E 4 HOH A 7 407 133 HOH HOH . E 4 HOH A 8 408 129 HOH HOH . E 4 HOH A 9 409 19 HOH HOH . E 4 HOH A 10 410 6 HOH HOH . E 4 HOH A 11 411 59 HOH HOH . E 4 HOH A 12 412 2 HOH HOH . E 4 HOH A 13 413 33 HOH HOH . E 4 HOH A 14 414 159 HOH HOH . E 4 HOH A 15 415 80 HOH HOH . E 4 HOH A 16 416 187 HOH HOH . E 4 HOH A 17 417 147 HOH HOH . E 4 HOH A 18 418 130 HOH HOH . E 4 HOH A 19 419 134 HOH HOH . E 4 HOH A 20 420 9 HOH HOH . E 4 HOH A 21 421 107 HOH HOH . E 4 HOH A 22 422 102 HOH HOH . E 4 HOH A 23 423 5 HOH HOH . E 4 HOH A 24 424 162 HOH HOH . E 4 HOH A 25 425 48 HOH HOH . E 4 HOH A 26 426 81 HOH HOH . E 4 HOH A 27 427 138 HOH HOH . E 4 HOH A 28 428 87 HOH HOH . E 4 HOH A 29 429 109 HOH HOH . E 4 HOH A 30 430 24 HOH HOH . E 4 HOH A 31 431 22 HOH HOH . E 4 HOH A 32 432 171 HOH HOH . E 4 HOH A 33 433 38 HOH HOH . E 4 HOH A 34 434 42 HOH HOH . E 4 HOH A 35 435 184 HOH HOH . E 4 HOH A 36 436 13 HOH HOH . E 4 HOH A 37 437 148 HOH HOH . E 4 HOH A 38 438 93 HOH HOH . E 4 HOH A 39 439 10 HOH HOH . E 4 HOH A 40 440 54 HOH HOH . E 4 HOH A 41 441 36 HOH HOH . E 4 HOH A 42 442 50 HOH HOH . E 4 HOH A 43 443 70 HOH HOH . E 4 HOH A 44 444 108 HOH HOH . E 4 HOH A 45 445 127 HOH HOH . E 4 HOH A 46 446 12 HOH HOH . E 4 HOH A 47 447 135 HOH HOH . E 4 HOH A 48 448 4 HOH HOH . E 4 HOH A 49 449 146 HOH HOH . E 4 HOH A 50 450 98 HOH HOH . E 4 HOH A 51 451 169 HOH HOH . E 4 HOH A 52 452 25 HOH HOH . E 4 HOH A 53 453 121 HOH HOH . E 4 HOH A 54 454 31 HOH HOH . E 4 HOH A 55 455 49 HOH HOH . E 4 HOH A 56 456 11 HOH HOH . E 4 HOH A 57 457 23 HOH HOH . E 4 HOH A 58 458 45 HOH HOH . E 4 HOH A 59 459 173 HOH HOH . E 4 HOH A 60 460 92 HOH HOH . E 4 HOH A 61 461 105 HOH HOH . E 4 HOH A 62 462 94 HOH HOH . E 4 HOH A 63 463 123 HOH HOH . E 4 HOH A 64 464 68 HOH HOH . E 4 HOH A 65 465 35 HOH HOH . E 4 HOH A 66 466 46 HOH HOH . E 4 HOH A 67 467 112 HOH HOH . E 4 HOH A 68 468 53 HOH HOH . E 4 HOH A 69 469 95 HOH HOH . E 4 HOH A 70 470 30 HOH HOH . E 4 HOH A 71 471 99 HOH HOH . E 4 HOH A 72 472 3 HOH HOH . E 4 HOH A 73 473 179 HOH HOH . E 4 HOH A 74 474 29 HOH HOH . E 4 HOH A 75 475 71 HOH HOH . E 4 HOH A 76 476 188 HOH HOH . E 4 HOH A 77 477 76 HOH HOH . E 4 HOH A 78 478 57 HOH HOH . E 4 HOH A 79 479 122 HOH HOH . E 4 HOH A 80 480 66 HOH HOH . E 4 HOH A 81 481 20 HOH HOH . E 4 HOH A 82 482 194 HOH HOH . E 4 HOH A 83 483 62 HOH HOH . E 4 HOH A 84 484 7 HOH HOH . E 4 HOH A 85 485 21 HOH HOH . E 4 HOH A 86 486 39 HOH HOH . E 4 HOH A 87 487 119 HOH HOH . E 4 HOH A 88 488 82 HOH HOH . E 4 HOH A 89 489 44 HOH HOH . E 4 HOH A 90 490 26 HOH HOH . E 4 HOH A 91 491 72 HOH HOH . E 4 HOH A 92 492 47 HOH HOH . E 4 HOH A 93 493 64 HOH HOH . E 4 HOH A 94 494 88 HOH HOH . E 4 HOH A 95 495 52 HOH HOH . E 4 HOH A 96 496 174 HOH HOH . E 4 HOH A 97 497 41 HOH HOH . E 4 HOH A 98 498 56 HOH HOH . E 4 HOH A 99 499 182 HOH HOH . E 4 HOH A 100 500 8 HOH HOH . E 4 HOH A 101 501 160 HOH HOH . E 4 HOH A 102 502 172 HOH HOH . E 4 HOH A 103 503 55 HOH HOH . E 4 HOH A 104 504 185 HOH HOH . E 4 HOH A 105 505 75 HOH HOH . E 4 HOH A 106 506 139 HOH HOH . E 4 HOH A 107 507 183 HOH HOH . E 4 HOH A 108 508 37 HOH HOH . E 4 HOH A 109 509 137 HOH HOH . E 4 HOH A 110 510 58 HOH HOH . E 4 HOH A 111 511 17 HOH HOH . E 4 HOH A 112 512 89 HOH HOH . E 4 HOH A 113 513 18 HOH HOH . E 4 HOH A 114 514 67 HOH HOH . E 4 HOH A 115 515 69 HOH HOH . E 4 HOH A 116 516 28 HOH HOH . E 4 HOH A 117 517 15 HOH HOH . E 4 HOH A 118 518 74 HOH HOH . E 4 HOH A 119 519 118 HOH HOH . E 4 HOH A 120 520 34 HOH HOH . E 4 HOH A 121 521 1 HOH HOH . E 4 HOH A 122 522 141 HOH HOH . E 4 HOH A 123 523 116 HOH HOH . E 4 HOH A 124 524 100 HOH HOH . E 4 HOH A 125 525 125 HOH HOH . E 4 HOH A 126 526 193 HOH HOH . E 4 HOH A 127 527 16 HOH HOH . E 4 HOH A 128 528 32 HOH HOH . E 4 HOH A 129 529 149 HOH HOH . E 4 HOH A 130 530 78 HOH HOH . E 4 HOH A 131 531 60 HOH HOH . E 4 HOH A 132 532 97 HOH HOH . E 4 HOH A 133 533 181 HOH HOH . E 4 HOH A 134 534 90 HOH HOH . E 4 HOH A 135 535 51 HOH HOH . E 4 HOH A 136 536 14 HOH HOH . E 4 HOH A 137 537 115 HOH HOH . E 4 HOH A 138 538 103 HOH HOH . E 4 HOH A 139 539 84 HOH HOH . E 4 HOH A 140 540 27 HOH HOH . E 4 HOH A 141 541 128 HOH HOH . E 4 HOH A 142 542 79 HOH HOH . E 4 HOH A 143 543 117 HOH HOH . E 4 HOH A 144 544 113 HOH HOH . E 4 HOH A 145 545 140 HOH HOH . E 4 HOH A 146 546 86 HOH HOH . E 4 HOH A 147 547 191 HOH HOH . E 4 HOH A 148 548 132 HOH HOH . E 4 HOH A 149 549 40 HOH HOH . E 4 HOH A 150 550 155 HOH HOH . E 4 HOH A 151 551 136 HOH HOH . E 4 HOH A 152 552 180 HOH HOH . E 4 HOH A 153 553 145 HOH HOH . E 4 HOH A 154 554 91 HOH HOH . E 4 HOH A 155 555 192 HOH HOH . E 4 HOH A 156 556 131 HOH HOH . E 4 HOH A 157 557 189 HOH HOH . E 4 HOH A 158 558 114 HOH HOH . E 4 HOH A 159 559 96 HOH HOH . E 4 HOH A 160 560 177 HOH HOH . E 4 HOH A 161 561 144 HOH HOH . E 4 HOH A 162 562 190 HOH HOH . E 4 HOH A 163 563 157 HOH HOH . E 4 HOH A 164 564 104 HOH HOH . E 4 HOH A 165 565 163 HOH HOH . E 4 HOH A 166 566 178 HOH HOH . E 4 HOH A 167 567 73 HOH HOH . E 4 HOH A 168 568 151 HOH HOH . E 4 HOH A 169 569 43 HOH HOH . E 4 HOH A 170 570 120 HOH HOH . E 4 HOH A 171 571 63 HOH HOH . E 4 HOH A 172 572 154 HOH HOH . E 4 HOH A 173 573 165 HOH HOH . E 4 HOH A 174 574 111 HOH HOH . E 4 HOH A 175 575 161 HOH HOH . E 4 HOH A 176 576 153 HOH HOH . E 4 HOH A 177 577 106 HOH HOH . E 4 HOH A 178 578 168 HOH HOH . E 4 HOH A 179 579 85 HOH HOH . E 4 HOH A 180 580 110 HOH HOH . E 4 HOH A 181 581 175 HOH HOH . E 4 HOH A 182 582 176 HOH HOH . E 4 HOH A 183 583 156 HOH HOH . E 4 HOH A 184 584 150 HOH HOH . E 4 HOH A 185 585 124 HOH HOH . E 4 HOH A 186 586 65 HOH HOH . E 4 HOH A 187 587 101 HOH HOH . E 4 HOH A 188 588 186 HOH HOH . E 4 HOH A 189 589 126 HOH HOH . E 4 HOH A 190 590 152 HOH HOH . E 4 HOH A 191 591 83 HOH HOH . E 4 HOH A 192 592 170 HOH HOH . E 4 HOH A 193 593 167 HOH HOH . E 4 HOH A 194 594 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 16.834 42.946 -2.331 0.66 28.21 ? S SO4 307 A 1 HETATM 2 O O1 SO4 . . . D 3 18.113 43.075 -3.03 0.66 9.36 ? O1 SO4 307 A 1 HETATM 3 O O2 SO4 . . . D 3 15.761 43.078 -3.315 0.66 31.89 ? O2 SO4 307 A 1 HETATM 4 O O3 SO4 . . . D 3 16.748 41.637 -1.671 0.66 21.85 ? O3 SO4 307 A 1 HETATM 5 O O4 SO4 . . . D 3 16.69 43.977 -1.303 0.66 20.09 ? O4 SO4 307 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 388 _model_server_stats.encode_time_ms 29 _model_server_stats.element_count 5 #