data_5VXC # _model_server_result.job_id H-bJSXzt3ifKwDXC5oQkNQ _model_server_result.datetime_utc '2024-12-03 10:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5vxc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5VXC # _exptl.entry_id 5VXC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5VXC _cell.length_a 76.515 _cell.length_b 76.515 _cell.length_c 139.428 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5VXC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 148 A GLU 171 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc2 A OD2 ASP 183 A ASP 206 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc3 C MG MG . A MG 402 1_555 D O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc4 C MG MG . A MG 402 1_555 D O HOH . A HOH 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc5 C MG MG . A MG 402 1_555 D O HOH . A HOH 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5VXC _atom_sites.fract_transf_matrix[1][1] 0.013069 _atom_sites.fract_transf_matrix[1][2] 0.007546 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 401 1 COA COA . C 3 MG A 1 402 1 MG MG . D 4 HOH A 1 501 159 HOH HOH . D 4 HOH A 2 502 124 HOH HOH . D 4 HOH A 3 503 161 HOH HOH . D 4 HOH A 4 504 158 HOH HOH . D 4 HOH A 5 505 197 HOH HOH . D 4 HOH A 6 506 118 HOH HOH . D 4 HOH A 7 507 51 HOH HOH . D 4 HOH A 8 508 154 HOH HOH . D 4 HOH A 9 509 133 HOH HOH . D 4 HOH A 10 510 49 HOH HOH . D 4 HOH A 11 511 73 HOH HOH . D 4 HOH A 12 512 19 HOH HOH . D 4 HOH A 13 513 151 HOH HOH . D 4 HOH A 14 514 121 HOH HOH . D 4 HOH A 15 515 168 HOH HOH . D 4 HOH A 16 516 164 HOH HOH . D 4 HOH A 17 517 40 HOH HOH . D 4 HOH A 18 518 112 HOH HOH . D 4 HOH A 19 519 54 HOH HOH . D 4 HOH A 20 520 131 HOH HOH . D 4 HOH A 21 521 44 HOH HOH . D 4 HOH A 22 522 68 HOH HOH . D 4 HOH A 23 523 99 HOH HOH . D 4 HOH A 24 524 67 HOH HOH . D 4 HOH A 25 525 176 HOH HOH . D 4 HOH A 26 526 149 HOH HOH . D 4 HOH A 27 527 86 HOH HOH . D 4 HOH A 28 528 153 HOH HOH . D 4 HOH A 29 529 32 HOH HOH . D 4 HOH A 30 530 24 HOH HOH . D 4 HOH A 31 531 70 HOH HOH . D 4 HOH A 32 532 31 HOH HOH . D 4 HOH A 33 533 23 HOH HOH . D 4 HOH A 34 534 50 HOH HOH . D 4 HOH A 35 535 198 HOH HOH . D 4 HOH A 36 536 65 HOH HOH . D 4 HOH A 37 537 129 HOH HOH . D 4 HOH A 38 538 165 HOH HOH . D 4 HOH A 39 539 52 HOH HOH . D 4 HOH A 40 540 104 HOH HOH . D 4 HOH A 41 541 74 HOH HOH . D 4 HOH A 42 542 6 HOH HOH . D 4 HOH A 43 543 139 HOH HOH . D 4 HOH A 44 544 157 HOH HOH . D 4 HOH A 45 545 72 HOH HOH . D 4 HOH A 46 546 85 HOH HOH . D 4 HOH A 47 547 79 HOH HOH . D 4 HOH A 48 548 5 HOH HOH . D 4 HOH A 49 549 136 HOH HOH . D 4 HOH A 50 550 22 HOH HOH . D 4 HOH A 51 551 101 HOH HOH . D 4 HOH A 52 552 3 HOH HOH . D 4 HOH A 53 553 111 HOH HOH . D 4 HOH A 54 554 90 HOH HOH . D 4 HOH A 55 555 66 HOH HOH . D 4 HOH A 56 556 146 HOH HOH . D 4 HOH A 57 557 190 HOH HOH . D 4 HOH A 58 558 80 HOH HOH . D 4 HOH A 59 559 199 HOH HOH . D 4 HOH A 60 560 8 HOH HOH . D 4 HOH A 61 561 35 HOH HOH . D 4 HOH A 62 562 48 HOH HOH . D 4 HOH A 63 563 126 HOH HOH . D 4 HOH A 64 564 26 HOH HOH . D 4 HOH A 65 565 100 HOH HOH . D 4 HOH A 66 566 76 HOH HOH . D 4 HOH A 67 567 7 HOH HOH . D 4 HOH A 68 568 20 HOH HOH . D 4 HOH A 69 569 13 HOH HOH . D 4 HOH A 70 570 21 HOH HOH . D 4 HOH A 71 571 28 HOH HOH . D 4 HOH A 72 572 127 HOH HOH . D 4 HOH A 73 573 182 HOH HOH . D 4 HOH A 74 574 47 HOH HOH . D 4 HOH A 75 575 169 HOH HOH . D 4 HOH A 76 576 184 HOH HOH . D 4 HOH A 77 577 16 HOH HOH . D 4 HOH A 78 578 175 HOH HOH . D 4 HOH A 79 579 9 HOH HOH . D 4 HOH A 80 580 97 HOH HOH . D 4 HOH A 81 581 4 HOH HOH . D 4 HOH A 82 582 92 HOH HOH . D 4 HOH A 83 583 137 HOH HOH . D 4 HOH A 84 584 58 HOH HOH . D 4 HOH A 85 585 71 HOH HOH . D 4 HOH A 86 586 96 HOH HOH . D 4 HOH A 87 587 29 HOH HOH . D 4 HOH A 88 588 77 HOH HOH . D 4 HOH A 89 589 102 HOH HOH . D 4 HOH A 90 590 30 HOH HOH . D 4 HOH A 91 591 180 HOH HOH . D 4 HOH A 92 592 166 HOH HOH . D 4 HOH A 93 593 55 HOH HOH . D 4 HOH A 94 594 25 HOH HOH . D 4 HOH A 95 595 179 HOH HOH . D 4 HOH A 96 596 78 HOH HOH . D 4 HOH A 97 597 113 HOH HOH . D 4 HOH A 98 598 125 HOH HOH . D 4 HOH A 99 599 1 HOH HOH . D 4 HOH A 100 600 33 HOH HOH . D 4 HOH A 101 601 147 HOH HOH . D 4 HOH A 102 602 11 HOH HOH . D 4 HOH A 103 603 130 HOH HOH . D 4 HOH A 104 604 18 HOH HOH . D 4 HOH A 105 605 10 HOH HOH . D 4 HOH A 106 606 140 HOH HOH . D 4 HOH A 107 607 81 HOH HOH . D 4 HOH A 108 608 14 HOH HOH . D 4 HOH A 109 609 84 HOH HOH . D 4 HOH A 110 610 27 HOH HOH . D 4 HOH A 111 611 63 HOH HOH . D 4 HOH A 112 612 141 HOH HOH . D 4 HOH A 113 613 195 HOH HOH . D 4 HOH A 114 614 94 HOH HOH . D 4 HOH A 115 615 117 HOH HOH . D 4 HOH A 116 616 39 HOH HOH . D 4 HOH A 117 617 202 HOH HOH . D 4 HOH A 118 618 204 HOH HOH . D 4 HOH A 119 619 15 HOH HOH . D 4 HOH A 120 620 46 HOH HOH . D 4 HOH A 121 621 42 HOH HOH . D 4 HOH A 122 622 178 HOH HOH . D 4 HOH A 123 623 2 HOH HOH . D 4 HOH A 124 624 12 HOH HOH . D 4 HOH A 125 625 53 HOH HOH . D 4 HOH A 126 626 34 HOH HOH . D 4 HOH A 127 627 114 HOH HOH . D 4 HOH A 128 628 181 HOH HOH . D 4 HOH A 129 629 87 HOH HOH . D 4 HOH A 130 630 36 HOH HOH . D 4 HOH A 131 631 61 HOH HOH . D 4 HOH A 132 632 41 HOH HOH . D 4 HOH A 133 633 59 HOH HOH . D 4 HOH A 134 634 135 HOH HOH . D 4 HOH A 135 635 89 HOH HOH . D 4 HOH A 136 636 132 HOH HOH . D 4 HOH A 137 637 200 HOH HOH . D 4 HOH A 138 638 45 HOH HOH . D 4 HOH A 139 639 64 HOH HOH . D 4 HOH A 140 640 37 HOH HOH . D 4 HOH A 141 641 43 HOH HOH . D 4 HOH A 142 642 82 HOH HOH . D 4 HOH A 143 643 138 HOH HOH . D 4 HOH A 144 644 88 HOH HOH . D 4 HOH A 145 645 152 HOH HOH . D 4 HOH A 146 646 17 HOH HOH . D 4 HOH A 147 647 189 HOH HOH . D 4 HOH A 148 648 122 HOH HOH . D 4 HOH A 149 649 93 HOH HOH . D 4 HOH A 150 650 106 HOH HOH . D 4 HOH A 151 651 95 HOH HOH . D 4 HOH A 152 652 75 HOH HOH . D 4 HOH A 153 653 194 HOH HOH . D 4 HOH A 154 654 119 HOH HOH . D 4 HOH A 155 655 156 HOH HOH . D 4 HOH A 156 656 185 HOH HOH . D 4 HOH A 157 657 103 HOH HOH . D 4 HOH A 158 658 173 HOH HOH . D 4 HOH A 159 659 196 HOH HOH . D 4 HOH A 160 660 105 HOH HOH . D 4 HOH A 161 661 167 HOH HOH . D 4 HOH A 162 662 120 HOH HOH . D 4 HOH A 163 663 134 HOH HOH . D 4 HOH A 164 664 203 HOH HOH . D 4 HOH A 165 665 60 HOH HOH . D 4 HOH A 166 666 83 HOH HOH . D 4 HOH A 167 667 62 HOH HOH . D 4 HOH A 168 668 150 HOH HOH . D 4 HOH A 169 669 91 HOH HOH . D 4 HOH A 170 670 116 HOH HOH . D 4 HOH A 171 671 108 HOH HOH . D 4 HOH A 172 672 187 HOH HOH . D 4 HOH A 173 673 38 HOH HOH . D 4 HOH A 174 674 115 HOH HOH . D 4 HOH A 175 675 123 HOH HOH . D 4 HOH A 176 676 201 HOH HOH . D 4 HOH A 177 677 188 HOH HOH . D 4 HOH A 178 678 174 HOH HOH . D 4 HOH A 179 679 177 HOH HOH . D 4 HOH A 180 680 186 HOH HOH . D 4 HOH A 181 681 143 HOH HOH . D 4 HOH A 182 682 110 HOH HOH . D 4 HOH A 183 683 57 HOH HOH . D 4 HOH A 184 684 155 HOH HOH . D 4 HOH A 185 685 192 HOH HOH . D 4 HOH A 186 686 163 HOH HOH . D 4 HOH A 187 687 183 HOH HOH . D 4 HOH A 188 688 56 HOH HOH . D 4 HOH A 189 689 205 HOH HOH . D 4 HOH A 190 690 69 HOH HOH . D 4 HOH A 191 691 191 HOH HOH . D 4 HOH A 192 692 98 HOH HOH . D 4 HOH A 193 693 193 HOH HOH . D 4 HOH A 194 694 144 HOH HOH . D 4 HOH A 195 695 172 HOH HOH . D 4 HOH A 196 696 170 HOH HOH . D 4 HOH A 197 697 160 HOH HOH . D 4 HOH A 198 698 162 HOH HOH . D 4 HOH A 199 699 109 HOH HOH . D 4 HOH A 200 700 145 HOH HOH . D 4 HOH A 201 701 128 HOH HOH . D 4 HOH A 202 702 171 HOH HOH . D 4 HOH A 203 703 148 HOH HOH . D 4 HOH A 204 704 142 HOH HOH . D 4 HOH A 205 705 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -15.554 _atom_site.Cartn_y 14.567 _atom_site.Cartn_z -23.179 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.64 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #