data_5VXD
#
_model_server_result.job_id            xShMoi-D6nmehNkzotI0VQ 
_model_server_result.datetime_utc      '2024-11-24 16:26:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5vxd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    5VXD 
#
_exptl.entry_id    5VXD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5VXD 
_cell.length_a            82.393 
_cell.length_b            85.988 
_cell.length_c            103.562 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5VXD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5VXD 
_atom_sites.fract_transf_matrix[1][1]    0.012137 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 401 1 GOL GOL . 
D 2 GOL B 1 401 1 GOL GOL . 
E 3 HOH A 1 501 44 HOH HOH . 
E 3 HOH A 2 502 7 HOH HOH . 
E 3 HOH A 3 503 99 HOH HOH . 
E 3 HOH A 4 504 8 HOH HOH . 
E 3 HOH A 5 505 114 HOH HOH . 
E 3 HOH A 6 506 61 HOH HOH . 
E 3 HOH A 7 507 4 HOH HOH . 
E 3 HOH A 8 508 20 HOH HOH . 
E 3 HOH A 9 509 117 HOH HOH . 
E 3 HOH A 10 510 39 HOH HOH . 
E 3 HOH A 11 511 5 HOH HOH . 
E 3 HOH A 12 512 4 HOH HOH . 
E 3 HOH A 13 513 20 HOH HOH . 
E 3 HOH A 14 514 28 HOH HOH . 
E 3 HOH A 15 515 6 HOH HOH . 
E 3 HOH A 16 516 1 HOH HOH . 
E 3 HOH A 17 517 86 HOH HOH . 
E 3 HOH A 18 518 2 HOH HOH . 
E 3 HOH A 19 519 3 HOH HOH . 
E 3 HOH A 20 520 25 HOH HOH . 
E 3 HOH A 21 521 74 HOH HOH . 
E 3 HOH A 22 522 81 HOH HOH . 
E 3 HOH A 23 523 4 HOH HOH . 
E 3 HOH A 24 524 48 HOH HOH . 
E 3 HOH A 25 525 3 HOH HOH . 
E 3 HOH A 26 526 88 HOH HOH . 
E 3 HOH A 27 527 23 HOH HOH . 
E 3 HOH A 28 528 3 HOH HOH . 
E 3 HOH A 29 529 52 HOH HOH . 
E 3 HOH A 30 530 107 HOH HOH . 
E 3 HOH A 31 531 7 HOH HOH . 
E 3 HOH A 32 532 7 HOH HOH . 
E 3 HOH A 33 533 32 HOH HOH . 
E 3 HOH A 34 534 59 HOH HOH . 
E 3 HOH A 35 535 3 HOH HOH . 
E 3 HOH A 36 536 31 HOH HOH . 
E 3 HOH A 37 537 7 HOH HOH . 
E 3 HOH A 38 538 3 HOH HOH . 
E 3 HOH A 39 539 124 HOH HOH . 
E 3 HOH A 40 540 38 HOH HOH . 
E 3 HOH A 41 541 8 HOH HOH . 
E 3 HOH A 42 542 63 HOH HOH . 
E 3 HOH A 43 543 97 HOH HOH . 
E 3 HOH A 44 544 7 HOH HOH . 
E 3 HOH A 45 545 28 HOH HOH . 
E 3 HOH A 46 546 13 HOH HOH . 
E 3 HOH A 47 547 16 HOH HOH . 
E 3 HOH A 48 548 103 HOH HOH . 
E 3 HOH A 49 549 50 HOH HOH . 
E 3 HOH A 50 550 58 HOH HOH . 
E 3 HOH A 51 551 21 HOH HOH . 
E 3 HOH A 52 552 64 HOH HOH . 
E 3 HOH A 53 553 2 HOH HOH . 
E 3 HOH A 54 554 6 HOH HOH . 
E 3 HOH A 55 555 33 HOH HOH . 
E 3 HOH A 56 556 23 HOH HOH . 
E 3 HOH A 57 557 2 HOH HOH . 
E 3 HOH A 58 558 9 HOH HOH . 
E 3 HOH A 59 559 82 HOH HOH . 
E 3 HOH A 60 560 76 HOH HOH . 
E 3 HOH A 61 561 7 HOH HOH . 
E 3 HOH A 62 562 43 HOH HOH . 
E 3 HOH A 63 563 41 HOH HOH . 
E 3 HOH A 64 564 85 HOH HOH . 
E 3 HOH A 65 565 66 HOH HOH . 
E 3 HOH A 66 566 11 HOH HOH . 
E 3 HOH A 67 567 10 HOH HOH . 
E 3 HOH A 68 568 19 HOH HOH . 
E 3 HOH A 69 569 34 HOH HOH . 
E 3 HOH A 70 570 11 HOH HOH . 
E 3 HOH A 71 571 5 HOH HOH . 
E 3 HOH A 72 572 55 HOH HOH . 
E 3 HOH A 73 573 102 HOH HOH . 
E 3 HOH A 74 574 24 HOH HOH . 
E 3 HOH A 75 575 14 HOH HOH . 
E 3 HOH A 76 576 22 HOH HOH . 
E 3 HOH A 77 577 16 HOH HOH . 
E 3 HOH A 78 578 67 HOH HOH . 
E 3 HOH A 79 579 1 HOH HOH . 
E 3 HOH A 80 580 9 HOH HOH . 
E 3 HOH A 81 581 1 HOH HOH . 
E 3 HOH A 82 582 32 HOH HOH . 
E 3 HOH A 83 583 87 HOH HOH . 
E 3 HOH A 84 584 18 HOH HOH . 
E 3 HOH A 85 585 18 HOH HOH . 
E 3 HOH A 86 586 9 HOH HOH . 
E 3 HOH A 87 587 4 HOH HOH . 
E 3 HOH A 88 588 57 HOH HOH . 
E 3 HOH A 89 589 17 HOH HOH . 
E 3 HOH A 90 590 70 HOH HOH . 
E 3 HOH A 91 591 113 HOH HOH . 
E 3 HOH A 92 592 54 HOH HOH . 
E 3 HOH A 93 593 26 HOH HOH . 
E 3 HOH A 94 594 26 HOH HOH . 
E 3 HOH A 95 595 71 HOH HOH . 
E 3 HOH A 96 596 80 HOH HOH . 
E 3 HOH A 97 597 89 HOH HOH . 
E 3 HOH A 98 598 14 HOH HOH . 
E 3 HOH A 99 599 1 HOH HOH . 
E 3 HOH A 100 600 56 HOH HOH . 
E 3 HOH A 101 601 68 HOH HOH . 
E 3 HOH A 102 602 83 HOH HOH . 
E 3 HOH A 103 603 95 HOH HOH . 
E 3 HOH A 104 604 8 HOH HOH . 
E 3 HOH A 105 605 46 HOH HOH . 
E 3 HOH A 106 606 4 HOH HOH . 
F 3 HOH B 1 501 4 HOH HOH . 
F 3 HOH B 2 502 98 HOH HOH . 
F 3 HOH B 3 503 123 HOH HOH . 
F 3 HOH B 4 504 9 HOH HOH . 
F 3 HOH B 5 505 79 HOH HOH . 
F 3 HOH B 6 506 5 HOH HOH . 
F 3 HOH B 7 507 101 HOH HOH . 
F 3 HOH B 8 508 24 HOH HOH . 
F 3 HOH B 9 509 30 HOH HOH . 
F 3 HOH B 10 510 111 HOH HOH . 
F 3 HOH B 11 511 116 HOH HOH . 
F 3 HOH B 12 512 90 HOH HOH . 
F 3 HOH B 13 513 12 HOH HOH . 
F 3 HOH B 14 514 29 HOH HOH . 
F 3 HOH B 15 515 4 HOH HOH . 
F 3 HOH B 16 516 62 HOH HOH . 
F 3 HOH B 17 517 42 HOH HOH . 
F 3 HOH B 18 518 115 HOH HOH . 
F 3 HOH B 19 519 15 HOH HOH . 
F 3 HOH B 20 520 40 HOH HOH . 
F 3 HOH B 21 521 25 HOH HOH . 
F 3 HOH B 22 522 120 HOH HOH . 
F 3 HOH B 23 523 112 HOH HOH . 
F 3 HOH B 24 524 60 HOH HOH . 
F 3 HOH B 25 525 72 HOH HOH . 
F 3 HOH B 26 526 73 HOH HOH . 
F 3 HOH B 27 527 122 HOH HOH . 
F 3 HOH B 28 528 14 HOH HOH . 
F 3 HOH B 29 529 65 HOH HOH . 
F 3 HOH B 30 530 126 HOH HOH . 
F 3 HOH B 31 531 77 HOH HOH . 
F 3 HOH B 32 532 69 HOH HOH . 
F 3 HOH B 33 533 96 HOH HOH . 
F 3 HOH B 34 534 29 HOH HOH . 
F 3 HOH B 35 535 45 HOH HOH . 
F 3 HOH B 36 536 22 HOH HOH . 
F 3 HOH B 37 537 47 HOH HOH . 
F 3 HOH B 38 538 106 HOH HOH . 
F 3 HOH B 39 539 1 HOH HOH . 
F 3 HOH B 40 540 110 HOH HOH . 
F 3 HOH B 41 541 6 HOH HOH . 
F 3 HOH B 42 542 10 HOH HOH . 
F 3 HOH B 43 543 15 HOH HOH . 
F 3 HOH B 44 544 30 HOH HOH . 
F 3 HOH B 45 545 11 HOH HOH . 
F 3 HOH B 46 546 10 HOH HOH . 
F 3 HOH B 47 547 3 HOH HOH . 
F 3 HOH B 48 548 53 HOH HOH . 
F 3 HOH B 49 549 130 HOH HOH . 
F 3 HOH B 50 550 51 HOH HOH . 
F 3 HOH B 51 551 36 HOH HOH . 
F 3 HOH B 52 552 1 HOH HOH . 
F 3 HOH B 53 553 27 HOH HOH . 
F 3 HOH B 54 554 78 HOH HOH . 
F 3 HOH B 55 555 12 HOH HOH . 
F 3 HOH B 56 556 84 HOH HOH . 
F 3 HOH B 57 557 133 HOH HOH . 
F 3 HOH B 58 558 104 HOH HOH . 
F 3 HOH B 59 559 119 HOH HOH . 
F 3 HOH B 60 560 91 HOH HOH . 
F 3 HOH B 61 561 6 HOH HOH . 
F 3 HOH B 62 562 2 HOH HOH . 
F 3 HOH B 63 563 93 HOH HOH . 
F 3 HOH B 64 564 108 HOH HOH . 
F 3 HOH B 65 565 2 HOH HOH . 
F 3 HOH B 66 566 105 HOH HOH . 
F 3 HOH B 67 567 127 HOH HOH . 
F 3 HOH B 68 568 31 HOH HOH . 
F 3 HOH B 69 569 2 HOH HOH . 
F 3 HOH B 70 570 13 HOH HOH . 
F 3 HOH B 71 571 5 HOH HOH . 
F 3 HOH B 72 572 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -25.52 22.753 -20.309 1 54.29 ? C1 GOL 401 B 1 
HETATM 2 O O1 GOL . . . D 2 -25.594 22.86 -21.722 1 50.82 ? O1 GOL 401 B 1 
HETATM 3 C C2 GOL . . . D 2 -25.169 21.288 -20.056 1 59.4 ? C2 GOL 401 B 1 
HETATM 4 O O2 GOL . . . D 2 -26.377 20.491 -19.958 1 53.09 ? O2 GOL 401 B 1 
HETATM 5 C C3 GOL . . . D 2 -24.303 21.125 -18.808 1 60.16 ? C3 GOL 401 B 1 
HETATM 6 O O3 GOL . . . D 2 -23.109 20.369 -19.045 1 56.79 ? O3 GOL 401 B 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#